Mycoplasma nasistruthionis strain 2F1A chromosome, complete genome.
Bacteria; Mycoplasmatota; Mollicutes; Mycoplasmataceae; Mycoplasma.
Mycoplasma nasistruthionis sp. nov. and Mycoplasma struthionis sp. nov. isolated from ostriches with respiratory disease
Submitted (04-JUN-2019) Department of Pathobiology, Institute of Microbiology, Veterinaerplatz 1, Vienna 1210, Austria
REFSEQ INFORMATION: The reference sequence is identical to\nCP040825.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAY-2019\nAssembly Method :: HGAP v. MAY-2019\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 900.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 23:49:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 663\nCDSs (total) :: 622\nGenes (coding) :: 607\nCDSs (with protein) :: 607\nGenes (RNA) :: 41\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 29\nncRNAs :: 3\nPseudo Genes (total) :: 15\nCDSs (without protein) :: 15\nPseudo Genes (ambiguous residues) :: 0 of 15\nPseudo Genes (frameshifted) :: 12 of 15\nPseudo Genes (incomplete) :: 3 of 15\nPseudo Genes (internal stop) :: 0 of 15\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Mycoplasma nasistruthionis
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011283253.1
GO:0003725 - double-stranded RNA binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013328.2
GO:0019104 - DNA N-glycosylase activity [Evidence IEA]; GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]
DNA-formamidopyrimidine glycosylase family protein
COORDINATES: protein motif:HMM:NF018533.2
COORDINATES: similar to AA sequence:RefSeq:WP_004794613.1
isochorismatase family cysteine hydrolase
COORDINATES: protein motif:HMM:NF013844.2
COORDINATES: similar to AA sequence:RefSeq:WP_004796114.1
COORDINATES: protein motif:HMM:NF021105.2
GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO:0090305 - nucleic acid phosphodiester bond hydrolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005683119.1
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_004797085.1
COORDINATES: protein motif:HMM:NF012863.2
signal recognition particle sRNA small type
COORDINATES: nucleotide motif:Rfam:14.4:RF00169
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_004795287.1
COORDINATES: protein motif:HMM:NF012869.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
ABC transporter transmembrane domain-containing protein
COORDINATES: protein motif:HMM:NF012492.2
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF012906.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005683496.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011283759.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006608441.1
GO:0003999 - adenine phosphoribosyltransferase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011283822.1
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015287587.1
COORDINATES: protein motif:HMM:NF024582.2
COORDINATES: protein motif:HMM:NF025381.2
COORDINATES: similar to AA sequence:RefSeq:WP_013054513.1
COORDINATES: similar to AA sequence:RefSeq:WP_004794417.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]; GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006608450.1
COORDINATES: similar to AA sequence:RefSeq:WP_004795313.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF019291.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00168
Lysine riboswitch is most abundant in Firmicutes and Gammaproteobacteria where they are found upstream of a number of genes involved in lysine biosynthesis, transport and catabolism; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_013054465.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004414517.1
COORDINATES: similar to AA sequence:RefSeq:WP_004795768.1
COORDINATES: similar to AA sequence:RefSeq:WP_004796270.1
COORDINATES: similar to AA sequence:RefSeq:WP_015287145.1
COORDINATES: similar to AA sequence:RefSeq:WP_004796666.1
COORDINATES: similar to AA sequence:RefSeq:WP_004795903.1
COORDINATES: similar to AA sequence:RefSeq:WP_013354940.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO:0043952 - protein transport by the Sec complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015287210.1
GO:0008997 - ribonuclease R activity [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015287211.1
tRNA1(Val) (adenine(37)-N6)-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_004794632.1
GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004795727.1
COORDINATES: protein motif:HMM:NF015276.2
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: similar to AA sequence:RefSeq:WP_013354555.1
COORDINATES: similar to AA sequence:RefSeq:WP_013354556.1
COORDINATES: similar to AA sequence:RefSeq:WP_004794644.1
COORDINATES: similar to AA sequence:RefSeq:WP_004796691.1
COORDINATES: similar to AA sequence:RefSeq:WP_013456279.1
GO:0009332 - glutamate-tRNA ligase complex [Evidence IEA]
GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011283265.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00023
COORDINATES: similar to AA sequence:RefSeq:WP_004794495.1
GO:0006450 - regulation of translational fidelity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013526719.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004832 - valine-tRNA ligase activity [Evidence IEA]
GO:0006438 - valyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011283442.1
bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_006886825.1
COORDINATES: similar to AA sequence:RefSeq:WP_004794503.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
class II fructose-1,6-bisphosphate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_004794504.1
COORDINATES: protein motif:HMM:NF017555.2
COORDINATES: protein motif:HMM:TIGR00456.1
GO:0004814 - arginine-tRNA ligase activity [Evidence IEA]
GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004797054.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013054648.1
GO:0008173 - RNA methyltransferase activity [Evidence IEA]
GO:0009451 - RNA modification [Evidence IEA]
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB
COORDINATES: similar to AA sequence:RefSeq:WP_004795030.1
COORDINATES: similar to AA sequence:RefSeq:WP_011283503.1
COORDINATES: similar to AA sequence:RefSeq:WP_013527154.1
transcription termination/antitermination protein NusG
COORDINATES: protein motif:HMM:NF013245.2
COORDINATES: similar to AA sequence:RefSeq:WP_013527160.1
COORDINATES: similar to AA sequence:RefSeq:WP_004797215.1
COORDINATES: protein motif:HMM:NF024783.2
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013301948.1
COORDINATES: similar to AA sequence:RefSeq:WP_012560302.1
COORDINATES: protein motif:HMM:TIGR00442.1
GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004797268.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016116.2
lipoprotein 17-related variable surface protein
COORDINATES: protein motif:HMM:NF013622.2
COORDINATES: similar to AA sequence:RefSeq:WP_010925000.1
COORDINATES: protein motif:HMM:TIGR04313.1
COORDINATES: protein motif:HMM:NF001097.0
GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015714.2
COORDINATES: protein motif:HMM:NF017911.2
COORDINATES: similar to AA sequence:RefSeq:WP_006886859.1
COORDINATES: similar to AA sequence:RefSeq:WP_005683592.1
COORDINATES: similar to AA sequence:RefSeq:WP_015287196.1
Holliday junction branch migration protein RuvA
COORDINATES: similar to AA sequence:RefSeq:WP_015287197.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0009378 - four-way junction helicase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
Holliday junction branch migration DNA helicase RuvB
COORDINATES: protein motif:HMM:NF014416.2
COORDINATES: protein motif:HMM:TIGR00966.2
GO:0031522 - cell envelope Sec protein transport complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011283625.1
COORDINATES: similar to AA sequence:RefSeq:WP_004794224.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054644.1
GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012349.2
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012870.2
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_013054543.1
COORDINATES: protein motif:HMM:NF014573.2
COORDINATES: protein motif:HMM:NF013691.2
COORDINATES: protein motif:HMM:NF020048.2
COORDINATES: similar to AA sequence:RefSeq:WP_004796567.1
COORDINATES: similar to AA sequence:RefSeq:WP_011283616.1
GO:0015935 - small ribosomal subunit [Evidence IEA]
GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005683776.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054716.1
cell division/cell wall cluster transcriptional repressor MraZ
COORDINATES: similar to AA sequence:RefSeq:WP_006608663.1
GO:0016434 - rRNA (cytosine) methyltransferase activity [Evidence IEA]
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
COORDINATES: similar to AA sequence:RefSeq:WP_013354626.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004794844.1
GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012578.2
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004024017.1
COORDINATES: similar to AA sequence:RefSeq:WP_004794421.1
GO:0015934 - large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004796630.1
COORDINATES: similar to AA sequence:RefSeq:WP_015287119.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013456487.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
transcription antitermination factor NusB
COORDINATES: similar to AA sequence:RefSeq:WP_015287024.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_004795333.1
GO:0005506 - iron ion binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
iron-sulfur cluster assembly scaffold protein
COORDINATES: protein motif:HMM:NF013015.2
COORDINATES: similar to AA sequence:RefSeq:WP_015287027.1
nicotinate-nucleotide adenylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_005683068.1
COORDINATES: similar to AA sequence:RefSeq:WP_005683300.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013054243.1
COORDINATES: similar to AA sequence:RefSeq:WP_005683580.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010924950.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054615.1
COORDINATES: similar to AA sequence:RefSeq:WP_006886824.1
COORDINATES: similar to AA sequence:RefSeq:WP_015287324.1
COORDINATES: similar to AA sequence:RefSeq:WP_020002954.1
COORDINATES: similar to AA sequence:RefSeq:WP_020002953.1
GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006886644.1
GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
phenylalanine--tRNA ligase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_004794909.1
replication-associated recombination protein A
COORDINATES: protein motif:HMM:NF013909.2
Nif3-like dinuclear metal center hexameric protein
COORDINATES: similar to AA sequence:RefSeq:WP_006886488.1
COORDINATES: protein motif:HMM:TIGR01391.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004795073.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF024486.2
COORDINATES: protein motif:HMM:TIGR00348.1
type I restriction endonuclease subunit R
COORDINATES: protein motif:HMM:NF013579.2
COORDINATES: similar to AA sequence:RefSeq:WP_006886563.1
GO:0015666 - restriction endodeoxyribonuclease activity [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]; GO:0009307 - DNA restriction-modification system [Evidence IEA]
type I restriction-modification system subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_004794516.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF013419.2
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00621.2
COORDINATES: similar to AA sequence:RefSeq:WP_011283671.1
COORDINATES: similar to AA sequence:RefSeq:WP_005683285.1
GO:0008176 - tRNA (guanine-N7-)-methyltransferase activity [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
tRNA (guanosine(46)-N7)-methyltransferase TrmB
COORDINATES: similar to AA sequence:RefSeq:WP_013526667.1
GO:0052913 - 16S rRNA (guanine(966)-N(2))-methyltransferase activity [Evidence IEA]
GO:0031167 - rRNA methylation [Evidence IEA]
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD
COORDINATES: protein motif:HMM:TIGR00479.1
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: protein motif:HMM:NF018028.2
COORDINATES: similar to AA sequence:RefSeq:WP_006886794.1
COORDINATES: protein motif:HMM:NF014679.2
COORDINATES: protein motif:HMM:NF013250.2
GO:0008444 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_015287313.1
GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013954838.1
DNA integrity scanning protein DisA nucleotide-binding domain protein
COORDINATES: similar to AA sequence:RefSeq:WP_015287593.1
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005683202.1
GO:0019843 - rRNA binding [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015287541.1
COORDINATES: similar to AA sequence:RefSeq:WP_004794526.1
COORDINATES: similar to AA sequence:RefSeq:WP_006886920.1
COORDINATES: protein motif:HMM:TIGR00594.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020002983.1
COORDINATES: similar to AA sequence:RefSeq:WP_006886897.1
GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004795034.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_004794827.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]; GO:0002098 - tRNA wobble uridine modification [Evidence IEA]
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
COORDINATES: similar to AA sequence:RefSeq:WP_004794825.1
23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH
COORDINATES: similar to AA sequence:RefSeq:WP_011949297.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004794865.1
GO:0004126 - cytidine deaminase activity [Evidence IEA]
GO:0008655 - pyrimidine-containing compound salvage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015510714.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004540 - ribonuclease activity [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF015377.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
cysteine peptidase family C39 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004421117.1
RpiB/LacA/LacB family sugar-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_013054697.1
COORDINATES: protein motif:HMM:NF024491.2
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004795906.1
COORDINATES: protein motif:HMM:NF013768.2
heat-inducible transcriptional repressor HrcA
COORDINATES: protein motif:HMM:NF013212.2
GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IEA]; GO:0051087 - chaperone binding [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004796660.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00093.1
COORDINATES: similar to AA sequence:RefSeq:WP_004797056.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0008973 - phosphopentomutase activity [Evidence IEA]
GO:0043094 - cellular metabolic compound salvage [Evidence IEA]; GO:0009117 - nucleotide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004796429.1
GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]
YhjD/YihY/BrkB family envelope integrity protein
COORDINATES: similar to AA sequence:RefSeq:WP_020003102.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB
COORDINATES: similar to AA sequence:RefSeq:WP_004794593.1
COORDINATES: similar to AA sequence:RefSeq:WP_013526681.1
COORDINATES: similar to AA sequence:RefSeq:WP_004795703.1
COORDINATES: similar to AA sequence:RefSeq:WP_006608426.1
GO:0005515 - protein binding [Evidence IEA]
GO:0007059 - chromosome segregation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004794238.1
COORDINATES: similar to AA sequence:RefSeq:WP_013354375.1
lysophospholipid acyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004794242.1
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
COORDINATES: similar to AA sequence:RefSeq:WP_015287177.1
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006886634.1
COORDINATES: protein motif:HMM:TIGR01146.1
COORDINATES: similar to AA sequence:RefSeq:WP_005683440.1
COORDINATES: similar to AA sequence:RefSeq:WP_004794573.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054261.1
GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045264 - plasma membrane proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013054208.1
COORDINATES: protein motif:HMM:NF012347.2
COORDINATES: protein motif:HMM:NF022525.2
COORDINATES: similar to AA sequence:RefSeq:WP_004795748.1
COORDINATES: similar to AA sequence:RefSeq:WP_006886576.1
COORDINATES: similar to AA sequence:RefSeq:WP_014582507.1
COORDINATES: similar to AA sequence:RefSeq:WP_005683589.1
COORDINATES: similar to AA sequence:RefSeq:WP_013456184.1
COORDINATES: similar to AA sequence:RefSeq:WP_005683567.1
COORDINATES: similar to AA sequence:RefSeq:WP_004796653.1
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012210.0
COORDINATES: similar to AA sequence:RefSeq:WP_011283557.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054335.1
COORDINATES: protein motif:HMM:NF012514.2
COORDINATES: similar to AA sequence:RefSeq:WP_012751240.1
COORDINATES: similar to AA sequence:RefSeq:WP_004796210.1
COORDINATES: similar to AA sequence:RefSeq:WP_011283511.1
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004794556.1
COORDINATES: similar to AA sequence:RefSeq:WP_004796742.1
DNA-directed RNA polymerase subunit beta'
COORDINATES: similar to AA sequence:RefSeq:WP_013526778.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0032549 - ribonucleoside binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit beta
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF018367.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_013054722.1
COORDINATES: protein motif:HMM:TIGR01249.1
GO:0004177 - aminopeptidase activity [Evidence IEA]
GO:0030163 - protein catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004796985.1
COORDINATES: similar to AA sequence:RefSeq:WP_004424821.1
COORDINATES: similar to AA sequence:RefSeq:WP_004418930.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012730.2
COORDINATES: protein motif:HMM:NF012576.2
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006689188.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013704.2
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015286875.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB
COORDINATES: similar to AA sequence:RefSeq:WP_005683902.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
COORDINATES: protein motif:HMM:NF013734.2
COORDINATES: similar to AA sequence:RefSeq:WP_015286881.1
GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA]
GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006886894.1
COORDINATES: protein motif:HMM:NF013860.2
COORDINATES: similar to AA sequence:RefSeq:WP_006886671.1
COORDINATES: similar to AA sequence:RefSeq:WP_013302467.1
COORDINATES: protein motif:HMM:NF022351.2
putative immunoglobulin-blocking virulence protein
COORDINATES: protein motif:HMM:TIGR04526.1
COORDINATES: similar to AA sequence:RefSeq:WP_015287618.1
COORDINATES: similar to AA sequence:RefSeq:WP_004023894.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004797043.1
COORDINATES: protein motif:HMM:TIGR02191.1
GO:0004525 - ribonuclease III activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015287647.1
GO:0043811 - phosphate:acyl-[acyl carrier protein] acyltransferase activity [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013354744.1
COORDINATES: similar to AA sequence:RefSeq:WP_004024390.1
COORDINATES: protein motif:HMM:NF018299.2
COORDINATES: similar to AA sequence:RefSeq:WP_004796521.1
COORDINATES: protein motif:HMM:TIGR00431.1
GO:0004730 - pseudouridylate synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020003073.1
GO:0004385 - guanylate kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: protein motif:HMM:NF025053.2
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: similar to AA sequence:RefSeq:WP_013527125.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome small subunit-dependent GTPase A
COORDINATES: similar to AA sequence:RefSeq:WP_006886279.1
COORDINATES: similar to AA sequence:RefSeq:WP_020002763.1
Tex-like N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004796731.1
GO:0015267 - channel activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004794806.1
COORDINATES: protein motif:HMM:NF021075.2
COORDINATES: similar to AA sequence:RefSeq:WP_014829985.1
GO:0046537 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity [Evidence IEA]
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
COORDINATES: similar to AA sequence:RefSeq:WP_004797220.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0018364 - peptidyl-glutamine methylation [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
peptide chain release factor N(5)-glutamine methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011283345.1
GO:0016149 - translation release factor activity, codon specific [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024910.2
COORDINATES: similar to AA sequence:RefSeq:WP_013954805.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006608657.1
COORDINATES: similar to AA sequence:RefSeq:WP_004797123.1
GO:0008795 - NAD+ synthase activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004794781.1
YebC/PmpR family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004797122.1
COORDINATES: similar to AA sequence:RefSeq:WP_004796287.1
COORDINATES: similar to AA sequence:RefSeq:WP_004797120.1
COORDINATES: protein motif:HMM:NF015736.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006886796.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00011
COORDINATES: similar to AA sequence:RefSeq:WP_004794443.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000312 - plastid small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005683617.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004797 - thymidine kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00647.1
GO:0043937 - regulation of sporulation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011283742.1
COORDINATES: similar to AA sequence:RefSeq:WP_006886302.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054690.1
COORDINATES: similar to AA sequence:RefSeq:WP_006886648.1
bifunctional oligoribonuclease/PAP phosphatase NrnA
COORDINATES: similar to AA sequence:RefSeq:WP_006886652.1
COORDINATES: similar to AA sequence:RefSeq:WP_013456345.1
COORDINATES: similar to AA sequence:RefSeq:WP_004796005.1
COORDINATES: protein motif:HMM:NF014684.2
COORDINATES: similar to AA sequence:RefSeq:WP_004796892.1
BMP family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013054625.1
COORDINATES: similar to AA sequence:RefSeq:WP_011283241.1
COORDINATES: similar to AA sequence:RefSeq:WP_013456157.1
COORDINATES: similar to AA sequence:RefSeq:WP_004797108.1
16S rRNA (uracil(1498)-N(3))-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_004795762.1
COORDINATES: similar to AA sequence:RefSeq:WP_015287138.1
GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013456577.1
GO:0006166 - purine ribonucleoside salvage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013054578.1
COORDINATES: similar to AA sequence:RefSeq:WP_013455996.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0070063 - RNA polymerase binding [Evidence IEA]
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005683739.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004796012.1
GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006608549.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF015039.2
COORDINATES: protein motif:HMM:TIGR00115.1
GO:0005854 - nascent polypeptide-associated complex [Evidence IEA]
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051083 - 'de novo' cotranslational protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013383.2
NAD(P)-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012759.2
COORDINATES: similar to AA sequence:RefSeq:WP_004795405.1
GO:0004827 - proline-tRNA ligase activity [Evidence IEA]
GO:0006433 - prolyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013456526.1
COORDINATES: similar to AA sequence:RefSeq:WP_015511235.1
COORDINATES: similar to AA sequence:RefSeq:WP_004795394.1
COORDINATES: similar to AA sequence:RefSeq:WP_013455947.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004023946.1
COORDINATES: similar to AA sequence:RefSeq:WP_011245027.1
COORDINATES: similar to AA sequence:RefSeq:WP_004795387.1
COORDINATES: similar to AA sequence:RefSeq:WP_004795385.1
COORDINATES: similar to AA sequence:RefSeq:WP_004023950.1
COORDINATES: similar to AA sequence:RefSeq:WP_005683413.1
COORDINATES: similar to AA sequence:RefSeq:WP_004795377.1
COORDINATES: similar to AA sequence:RefSeq:WP_004023953.1
COORDINATES: similar to AA sequence:RefSeq:WP_010925382.1
COORDINATES: similar to AA sequence:RefSeq:WP_004421681.1
COORDINATES: similar to AA sequence:RefSeq:WP_004023956.1
COORDINATES: similar to AA sequence:RefSeq:WP_020003153.1
COORDINATES: similar to AA sequence:RefSeq:WP_004796033.1
COORDINATES: similar to AA sequence:RefSeq:WP_020003155.1
COORDINATES: similar to AA sequence:RefSeq:WP_004795358.1
COORDINATES: similar to AA sequence:RefSeq:WP_004796031.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004795356.1
COORDINATES: similar to AA sequence:RefSeq:WP_004420471.1
COORDINATES: similar to AA sequence:RefSeq:WP_004795258.1
GO:0004743 - pyruvate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015287657.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome biogenesis GTP-binding protein YihA/YsxC
COORDINATES: similar to AA sequence:RefSeq:WP_013021802.1
GO:0008776 - acetate kinase activity [Evidence IEA]
GO:0006083 - acetate metabolic process [Evidence IEA]; GO:0006113 - fermentation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015286924.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0005762 - mitochondrial large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004023932.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
DNA-directed RNA polymerase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_004023933.1
COORDINATES: similar to AA sequence:RefSeq:WP_015286921.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004025773.1
COORDINATES: similar to AA sequence:RefSeq:WP_011283714.1
COORDINATES: similar to AA sequence:RefSeq:WP_004794378.1
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006886396.1
COORDINATES: similar to AA sequence:RefSeq:WP_011283717.1
COORDINATES: similar to AA sequence:RefSeq:WP_006886460.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0008168 - methyltransferase activity [Evidence IEA]
GO:0046118 - 7-methylguanosine biosynthetic process [Evidence IEA]; GO:0031167 - rRNA methylation [Evidence IEA]
16S rRNA (guanine(527)-N(7))-methyltransferase RsmG
COORDINATES: similar to AA sequence:RefSeq:WP_006886461.1
COORDINATES: similar to AA sequence:RefSeq:WP_004794172.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014690.2
GO:0043772 - acyl-phosphate glycerol-3-phosphate acyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004795507.1
GO:0042586 - peptide deformylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014068.2
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019887.2
COORDINATES: protein motif:HMM:NF017007.2
COORDINATES: protein motif:HMM:NF013514.2
COORDINATES: similar to AA sequence:RefSeq:WP_011283754.1
COORDINATES: protein motif:HMM:NF012413.2
GO:0004146 - dihydrofolate reductase activity [Evidence IEA]
GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011283813.1
GO:0033862 - UMP kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004795514.1
GO:0008135 - translation factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004796954.1
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
COORDINATES: similar to AA sequence:RefSeq:WP_006886463.1
COORDINATES: similar to AA sequence:RefSeq:WP_004794170.1
GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]
16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
COORDINATES: similar to AA sequence:RefSeq:WP_015287718.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: protein motif:HMM:NF014186.2
COORDINATES: similar to AA sequence:RefSeq:WP_011283736.1
GO:0004526 - ribonuclease P activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006886182.1
COORDINATES: similar to AA sequence:RefSeq:WP_004796054.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF015531.2
COORDINATES: similar to AA sequence:RefSeq:WP_013054302.1
RNA-binding S4 domain-containing protein
COORDINATES: protein motif:HMM:NF012915.2
COORDINATES: protein motif:HMM:NF012529.2
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: similar to AA sequence:RefSeq:WP_006886450.1
GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02432.1
GO:0016879 - ligase activity, forming carbon-nitrogen bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006608351.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004794099.1
COORDINATES: similar to AA sequence:RefSeq:WP_013354298.1
GO:0004824 - lysine-tRNA ligase activity [Evidence IEA]
GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011283280.1
COORDINATES: similar to AA sequence:RefSeq:WP_006608738.1
GO:0009380 - excinuclease repair complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0006289 - nucleotide-excision repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015287696.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013354951.1
GO:0016791 - phosphatase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005683362.1
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: protein motif:HMM:NF024593.2
COORDINATES: similar to AA sequence:RefSeq:WP_013054189.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005683884.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00571.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
Dam family site-specific DNA-(adenine-N6)-methyltransferase
COORDINATES: protein motif:HMM:NF016443.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
DpnII family type II restriction endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_004797232.1
COORDINATES: protein motif:HMM:NF004046.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004795197.1
YbaB/EbfC family nucleoid-associated protein
COORDINATES: protein motif:HMM:NF025044.2
COORDINATES: similar to AA sequence:RefSeq:WP_004795199.1
GO:0004798 - thymidylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024575.2
COORDINATES: similar to AA sequence:RefSeq:WP_004795204.1
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0000451 - rRNA 2'-O-methylation [Evidence IEA]
16S rRNA (cytidine(1402)-2'-O)-methyltransferase
COORDINATES: protein motif:HMM:TIGR00022.1
COORDINATES: protein motif:HMM:NF021427.2
COORDINATES: protein motif:HMM:NF013327.2
COORDINATES: similar to AA sequence:RefSeq:WP_006608734.1
COORDINATES: similar to AA sequence:RefSeq:WP_011283803.1
COORDINATES: similar to AA sequence:RefSeq:WP_004795216.1
tRNA (cytidine(34)-2'-O)-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_004795217.1
COORDINATES: protein motif:HMM:NF016959.2
COORDINATES: similar to AA sequence:RefSeq:WP_013354392.1
COORDINATES: similar to AA sequence:RefSeq:WP_004795998.1
GO:0009340 - DNA topoisomerase IV complex [Evidence IEA]
GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004795432.1
COORDINATES: similar to AA sequence:RefSeq:WP_005683280.1
COORDINATES: similar to AA sequence:RefSeq:WP_004795186.1
GO:0004127 - cytidylate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015510731.1
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005047 - signal recognition particle binding [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]
signal recognition particle-docking protein FtsY
COORDINATES: similar to AA sequence:RefSeq:WP_011283309.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: protein motif:HMM:NF016085.2
COORDINATES: similar to AA sequence:RefSeq:WP_004794463.1
COORDINATES: similar to AA sequence:RefSeq:WP_006608813.1
COORDINATES: similar to AA sequence:RefSeq:WP_011283187.1
GO:0048501 - signal recognition particle, plasma membrane targeting [Evidence IEA]
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005048 - signal sequence binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005683798.1
COORDINATES: protein motif:HMM:NF005932.1
GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006688761.1
COORDINATES: similar to AA sequence:RefSeq:WP_013354332.1
COORDINATES: similar to AA sequence:RefSeq:WP_004796068.1
GO:0052906 - tRNA (guanine(37)-N(1))-methyltransferase activity [Evidence IEA]
tRNA (guanosine(37)-N1)-methyltransferase TrmD
COORDINATES: similar to AA sequence:RefSeq:WP_005683672.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054640.1
energy-coupling factor transporter transmembrane component T
COORDINATES: similar to AA sequence:RefSeq:WP_011283796.1
COORDINATES: similar to AA sequence:RefSeq:WP_004796440.1
energy-coupling factor transporter ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_013456354.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023393.2
COORDINATES: similar to AA sequence:RefSeq:WP_020003116.1
GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013054273.1
COORDINATES: similar to AA sequence:RefSeq:WP_020002923.1
COORDINATES: similar to AA sequence:RefSeq:WP_004795236.1
COORDINATES: protein motif:HMM:NF016146.2
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004794092.1
COORDINATES: protein motif:HMM:NF012376.2
bifunctional UDP-sugar hydrolase/5'-nucleotidase
COORDINATES: similar to AA sequence:RefSeq:WP_004795156.1
COORDINATES: similar to AA sequence:RefSeq:WP_013054539.1
COORDINATES: similar to AA sequence:RefSeq:WP_011283211.1
COORDINATES: similar to AA sequence:RefSeq:WP_004796964.1
GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011265034.1
COORDINATES: similar to AA sequence:RefSeq:WP_013527074.1
GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA]
GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013421.2
COORDINATES: similar to AA sequence:RefSeq:WP_004796248.1
COORDINATES: similar to AA sequence:RefSeq:WP_011949713.1
COORDINATES: similar to AA sequence:RefSeq:WP_004023968.1
GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012372.2
COORDINATES: similar to AA sequence:RefSeq:WP_004796679.1
GO:0004139 - deoxyribose-phosphate aldolase activity [Evidence IEA]
GO:0009264 - deoxyribonucleotide catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004794618.1
GO:0006206 - pyrimidine nucleobase metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004794616.1
GO:0004731 - purine-nucleoside phosphorylase activity [Evidence IEA]
GO:0043096 - purine nucleobase salvage [Evidence IEA]