Azotobacter chroococcum strain B3 plasmid pacx50dB3b.
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.
Submitted (15-JUN-2015) Geosciences, Princeton University, Guyot Hall, Princeton, NJ 08544, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP011838.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP (SMRT pipeline) v. 1.85.133289\nGenome Coverage :: 150\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/30/2022 04:42:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,759\nCDSs (total) :: 4,673\nGenes (coding) :: 4,511\nCDSs (with protein) :: 4,511\nGenes (RNA) :: 86\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 64\nncRNAs :: 4\nPseudo Genes (total) :: 162\nCDSs (without protein) :: 162\nPseudo Genes (ambiguous residues) :: 0 of 162\nPseudo Genes (frameshifted) :: 80 of 162\nPseudo Genes (incomplete) :: 110 of 162\nPseudo Genes (internal stop) :: 20 of 162\nPseudo Genes (multiple problems) :: 45 of 162\n##Genome-Annotation-Data-END##\nCOMPLETENESS: not full length.
COORDINATES: similar to AA sequence:RefSeq:WP_000971921.1
frameshifted; internal stop; incomplete; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014236095.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
peptidase dimerization domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF019352.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF037081.2
COORDINATES: similar to AA sequence:RefSeq:WP_010567768.1
COORDINATES: protein motif:HMM:NF012415.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611570.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_011077862.1
COORDINATES: protein motif:HMM:NF024180.2
COORDINATES: similar to AA sequence:RefSeq:WP_003117291.1
COORDINATES: similar to AA sequence:RefSeq:WP_015245658.1
COORDINATES: similar to AA sequence:RefSeq:WP_007908282.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017279408.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011001433.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020309233.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019366266.1
COORDINATES: similar to AA sequence:RefSeq:WP_012703251.1
COORDINATES: similar to AA sequence:RefSeq:WP_007945300.1
zinc-binding alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006316736.1
COORDINATES: similar to AA sequence:RefSeq:WP_006316737.1
putative adenosine monophosphate-protein transferase Fic
COORDINATES: similar to AA sequence:RefSeq:WP_007909144.1
COORDINATES: similar to AA sequence:RefSeq:WP_017842853.1
COORDINATES: similar to AA sequence:RefSeq:WP_004248768.1
COORDINATES: similar to AA sequence:RefSeq:WP_015486995.1
COORDINATES: protein motif:HMM:NF039622.1
COORDINATES: protein motif:HMM:NF019153.2
COORDINATES: similar to AA sequence:RefSeq:WP_019020826.1
COORDINATES: similar to AA sequence:RefSeq:WP_003229984.1
COORDINATES: similar to AA sequence:RefSeq:WP_013699108.1
COORDINATES: similar to AA sequence:RefSeq:WP_012469470.1
COORDINATES: similar to AA sequence:RefSeq:WP_005769811.1
COORDINATES: similar to AA sequence:RefSeq:WP_020304494.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611762.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006159263.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018293196.1
COORDINATES: similar to AA sequence:RefSeq:WP_014756827.1
COORDINATES: protein motif:HMM:NF013507.2
COORDINATES: protein motif:HMM:NF019351.2
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
multicopper oxidase domain-containing protein