Azotobacter chroococcum strain B3 plasmid pacX50dB3a.
Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.
Submitted (15-JUN-2015) Geosciences, Princeton University, Guyot Hall, Princeton, NJ 08544, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP011837.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP (SMRT pipeline) v. 1.85.133289\nGenome Coverage :: 150\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/30/2022 04:42:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,759\nCDSs (total) :: 4,673\nGenes (coding) :: 4,511\nCDSs (with protein) :: 4,511\nGenes (RNA) :: 86\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 64\nncRNAs :: 4\nPseudo Genes (total) :: 162\nCDSs (without protein) :: 162\nPseudo Genes (ambiguous residues) :: 0 of 162\nPseudo Genes (frameshifted) :: 80 of 162\nPseudo Genes (incomplete) :: 110 of 162\nPseudo Genes (internal stop) :: 20 of 162\nPseudo Genes (multiple problems) :: 45 of 162\n##Genome-Annotation-Data-END##\nCOMPLETENESS: not full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_003114155.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: protein motif:HMM:NF012573.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024627.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: protein motif:HMM:NF024120.2
glycosyl hydrolase family 28-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611762.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003198119.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011880220.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020304808.1
COORDINATES: similar to AA sequence:RefSeq:WP_017684802.1
COORDINATES: similar to AA sequence:RefSeq:WP_017684801.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495516.1
COORDINATES: similar to AA sequence:RefSeq:WP_016569389.1
COORDINATES: similar to AA sequence:RefSeq:WP_019020826.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
COORDINATES: protein motif:HMM:NF019153.2
COORDINATES: similar to AA sequence:RefSeq:WP_011077862.1
COORDINATES: similar to AA sequence:RefSeq:WP_020750540.1
COORDINATES: similar to AA sequence:RefSeq:WP_010567768.1
COORDINATES: similar to AA sequence:RefSeq:WP_015486995.1
COORDINATES: similar to AA sequence:RefSeq:WP_017903839.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011238773.1
COORDINATES: similar to AA sequence:RefSeq:WP_016713376.1
COORDINATES: similar to AA sequence:RefSeq:WP_001138014.1
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611576.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011913346.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005373018.1
COORDINATES: protein motif:HMM:NF021589.2
COORDINATES: similar to AA sequence:RefSeq:WP_020308517.1
polysaccharide biosynthesis/export family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020308516.1
GO:0045226 - extracellular polysaccharide biosynthetic process [Evidence IEA]
polysaccharide biosynthesis tyrosine autokinase
COORDINATES: similar to AA sequence:RefSeq:WP_013790799.1
CpsB/CapC family capsule biosynthesis tyrosine phosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_015095970.1
undecaprenyl-phosphate glucose phosphotransferase
COORDINATES: protein motif:HMM:NF014051.2
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: similar to AA sequence:RefSeq:WP_011044032.1
COORDINATES: protein motif:HMM:NF016145.2
polysaccharide pyruvyl transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013554356.1
COORDINATES: similar to AA sequence:RefSeq:WP_018265661.1
COORDINATES: protein motif:HMM:NF013530.2
COORDINATES: similar to AA sequence:RefSeq:WP_013971481.1
GO:0008446 - GDP-mannose 4,6-dehydratase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007939948.1
COORDINATES: similar to AA sequence:RefSeq:WP_020308500.1
GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011408780.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235249.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012701750.1
IS701-like element ISAzvi8 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011077979.1
COORDINATES: similar to AA sequence:RefSeq:WP_012703556.1
COORDINATES: similar to AA sequence:RefSeq:WP_020795659.1