Shinella zoogloeoides strain ATCC 19623 plasmid unnamed4, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Shinella.
Cellulose-mediated floc formation by the activated sludge bacterium Shinella zoogloeoides ATCC 19623
Submitted (17-SEP-2021) Fisheries Research Institute, Anhui Academy of Agricultural Sciences, Nongke road 40, Hefei, Anhui 230031, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP086614.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. Version 2.04\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina Hiseq+PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/05/2022 05:09:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,735\nCDSs (total) :: 4,669\nGenes (coding) :: 4,586\nCDSs (with protein) :: 4,586\nGenes (RNA) :: 66\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 4\nPseudo Genes (total) :: 83\nCDSs (without protein) :: 83\nPseudo Genes (ambiguous residues) :: 0 of 83\nPseudo Genes (frameshifted) :: 17 of 83\nPseudo Genes (incomplete) :: 68 of 83\nPseudo Genes (internal stop) :: 11 of 83\nPseudo Genes (multiple problems) :: 12 of 83\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012774.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017183.2
COORDINATES: similar to AA sequence:RefSeq:WP_011950477.1
COORDINATES: similar to AA sequence:RefSeq:WP_003522901.1
COORDINATES: similar to AA sequence:RefSeq:WP_013480810.1
COORDINATES: similar to AA sequence:RefSeq:WP_007427784.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501130.1
COORDINATES: protein motif:HMM:NF013594.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002769067.1
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012457036.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_020812900.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_020812899.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007630327.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501116.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501115.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501113.1
COORDINATES: similar to AA sequence:RefSeq:WP_011509163.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_003501110.1
COORDINATES: similar to AA sequence:RefSeq:WP_013419117.1
COORDINATES: similar to AA sequence:RefSeq:WP_013419116.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611153.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011983060.1
COORDINATES: similar to AA sequence:RefSeq:WP_011983061.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612398.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010512305.1