Shinella zoogloeoides strain ATCC 19623 plasmid unnamed2, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Shinella.
Cellulose-mediated floc formation by the activated sludge bacterium Shinella zoogloeoides ATCC 19623
Submitted (17-SEP-2021) Fisheries Research Institute, Anhui Academy of Agricultural Sciences, Nongke road 40, Hefei, Anhui 230031, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP086612.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. Version 2.04\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina Hiseq+PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/05/2022 05:09:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,735\nCDSs (total) :: 4,669\nGenes (coding) :: 4,586\nCDSs (with protein) :: 4,586\nGenes (RNA) :: 66\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 4\nPseudo Genes (total) :: 83\nCDSs (without protein) :: 83\nPseudo Genes (ambiguous residues) :: 0 of 83\nPseudo Genes (frameshifted) :: 17 of 83\nPseudo Genes (incomplete) :: 68 of 83\nPseudo Genes (internal stop) :: 11 of 83\nPseudo Genes (multiple problems) :: 12 of 83\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_003501263.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013650747.1
COORDINATES: similar to AA sequence:RefSeq:WP_013650748.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501258.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007799835.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017995952.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018483758.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240681.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501674.1
COORDINATES: similar to AA sequence:RefSeq:WP_009032070.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011427313.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003537795.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129277.1
COORDINATES: protein motif:HMM:NF039805.1
COORDINATES: similar to AA sequence:RefSeq:WP_007699532.1
COORDINATES: similar to AA sequence:RefSeq:WP_032490240.1
COORDINATES: similar to AA sequence:RefSeq:WP_052096176.1
COORDINATES: similar to AA sequence:RefSeq:WP_011982915.1
GO:0015299 - solute:proton antiporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011982916.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
GO:0006662 - glycerol ether metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013651415.1
ATP-dependent Clp protease proteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_020084962.1
rhomboid family intramembrane serine protease
COORDINATES: similar to AA sequence:RefSeq:WP_013651413.1
GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
GO:0022900 - electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003603281.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603279.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603278.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_011982926.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003603276.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020084957.1
COORDINATES: similar to AA sequence:RefSeq:WP_020084956.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603273.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603272.1
COORDINATES: similar to AA sequence:RefSeq:WP_011982932.1
phosphate-starvation-inducible PsiE family protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015929589.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003501082.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603269.1
COORDINATES: similar to AA sequence:RefSeq:WP_015496413.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0044265 - cellular macromolecule catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007639714.1
GO:0016874 - ligase activity [Evidence IEA]
GO:0051235 - maintenance of location [Evidence IEA]
COORDINATES: protein motif:HMM:NF019850.2
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018104763.1
dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_013496329.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:NF012706.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF017812.2
COORDINATES: similar to AA sequence:RefSeq:WP_020660236.1
hydantoinase/oxoprolinase family protein
COORDINATES: protein motif:HMM:NF013224.2
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011314199.1
COORDINATES: similar to AA sequence:RefSeq:WP_020812325.1
COORDINATES: similar to AA sequence:RefSeq:WP_006727097.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018045645.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611153.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018210377.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011982906.1
COORDINATES: similar to AA sequence:RefSeq:WP_004120367.1
COORDINATES: similar to AA sequence:RefSeq:WP_011982908.1
COORDINATES: similar to AA sequence:RefSeq:WP_011982909.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011982910.1
branched-chain amino acid ABC transporter ATP-binding protein/permease
COORDINATES: similar to AA sequence:RefSeq:WP_011982911.1
COORDINATES: similar to AA sequence:RefSeq:WP_007006902.1
COORDINATES: similar to AA sequence:RefSeq:WP_011982913.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_020010132.1
COORDINATES: similar to AA sequence:RefSeq:WP_012708129.1
COORDINATES: similar to AA sequence:RefSeq:WP_018327449.1
COORDINATES: similar to AA sequence:RefSeq:WP_010661749.1
SCP2 sterol-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007877599.1
COORDINATES: similar to AA sequence:RefSeq:WP_018327452.1
GO:0006744 - ubiquinone biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF018659.2
SdiA-regulated domain-containing protein
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020812260.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003508114.1
COORDINATES: similar to AA sequence:RefSeq:WP_020812567.1
GO:0008697 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity [Evidence IEA]
GO:0045490 - pectin catabolic process [Evidence IEA]
5-dehydro-4-deoxy-D-glucuronate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_003517922.1
GO:0008678 - 2-deoxy-D-gluconate 3-dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0000272 - polysaccharide catabolic process [Evidence IEA]
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD
COORDINATES: similar to AA sequence:RefSeq:WP_003517921.1
GO:0047448 - 5-dehydro-4-deoxyglucarate dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003499884.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012115344.1
COORDINATES: similar to AA sequence:RefSeq:WP_019566472.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020812558.1
COORDINATES: similar to AA sequence:RefSeq:WP_003508131.1
COORDINATES: similar to AA sequence:RefSeq:WP_003522677.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_006311870.1
COORDINATES: similar to AA sequence:RefSeq:WP_003522675.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003508135.1
COORDINATES: similar to AA sequence:RefSeq:WP_010023905.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_018444840.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011930555.1
COORDINATES: similar to AA sequence:RefSeq:WP_007810268.1
COORDINATES: protein motif:HMM:NF017775.2
ABC transporter ATP-binding protein/permease
COORDINATES: similar to AA sequence:RefSeq:WP_007689314.1
RpiB/LacA/LacB family sugar-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_018444789.1
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016557364.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004124033.1
COORDINATES: similar to AA sequence:RefSeq:WP_019995757.1
COORDINATES: similar to AA sequence:RefSeq:WP_007637084.1
GO:0009331 - glycerol-3-phosphate dehydrogenase complex [Evidence IEA]
GO:0004368 - glycerol-3-phosphate dehydrogenase (quinone) activity [Evidence IEA]
GO:0006072 - glycerol-3-phosphate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007689327.1
COORDINATES: similar to AA sequence:RefSeq:WP_018896951.1
COORDINATES: similar to AA sequence:RefSeq:WP_007689330.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004685989.1
COORDINATES: similar to AA sequence:RefSeq:WP_006073978.1
D-ribose ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006138293.1
COORDINATES: similar to AA sequence:RefSeq:WP_007689341.1
COORDINATES: similar to AA sequence:RefSeq:WP_015343138.1
glycerol-3-phosphate dehydrogenase/oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_011728941.1
COORDINATES: similar to AA sequence:RefSeq:WP_004119229.1
GO:0050661 - NADP binding [Evidence IEA]
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017957299.1
COORDINATES: similar to AA sequence:RefSeq:WP_018097899.1
COORDINATES: similar to AA sequence:RefSeq:WP_020479465.1
COORDINATES: similar to AA sequence:RefSeq:WP_016557855.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555682.1
COORDINATES: similar to AA sequence:RefSeq:WP_018097895.1
COORDINATES: similar to AA sequence:RefSeq:WP_008877767.1
COORDINATES: similar to AA sequence:RefSeq:WP_017271579.1
ribulose-bisphosphate carboxylase large subunit family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014763063.1
four-carbon acid sugar kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002719559.1
COORDINATES: similar to AA sequence:RefSeq:WP_012091814.1
COORDINATES: protein motif:HMM:NF013648.2
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_004685895.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007642.1
COORDINATES: similar to AA sequence:RefSeq:WP_007762443.1
COORDINATES: similar to AA sequence:RefSeq:WP_018430774.1
siderophore ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011157937.1
iron chelate uptake ABC transporter family permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007762451.1
COORDINATES: similar to AA sequence:RefSeq:WP_020181469.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018246490.1
COORDINATES: similar to AA sequence:RefSeq:WP_003564056.1
COORDINATES: similar to AA sequence:RefSeq:WP_012709061.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003574686.1
COORDINATES: similar to AA sequence:RefSeq:WP_014765628.1
COORDINATES: similar to AA sequence:RefSeq:WP_003564049.1
COORDINATES: similar to AA sequence:RefSeq:WP_010972028.1
GO:0019285 - glycine betaine biosynthetic process from choline [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013896193.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0015220 - choline transmembrane transporter activity [Evidence IEA]
GO:0015871 - choline transport [Evidence IEA]
choline ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_008613345.1
COORDINATES: similar to AA sequence:RefSeq:WP_019170326.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004494 - methylmalonyl-CoA mutase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003520844.1
acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_020012142.1
COORDINATES: similar to AA sequence:RefSeq:WP_006174313.1
COORDINATES: similar to AA sequence:RefSeq:WP_018323686.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750449.1
COORDINATES: similar to AA sequence:RefSeq:WP_009564086.1
GO:0050304 - nitrous-oxide reductase activity [Evidence IEA]
GO:0019333 - denitrification pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011750447.1
nitrous oxide reductase family maturation protein NosD
COORDINATES: similar to AA sequence:RefSeq:WP_011750446.1
COORDINATES: similar to AA sequence:RefSeq:WP_012643415.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750444.1
nitrous oxide reductase accessory protein NosL
COORDINATES: similar to AA sequence:RefSeq:WP_012643417.1
GO:0017013 - protein flavinylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013419466.1
GO:0008998 - ribonucleoside-triphosphate reductase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009206822.1
COORDINATES: similar to AA sequence:RefSeq:WP_008259894.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]; GO:0051353 - positive regulation of oxidoreductase activity [Evidence IEA]
anaerobic ribonucleoside-triphosphate reductase activating protein
COORDINATES: similar to AA sequence:RefSeq:WP_018897951.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003505612.1
hydrogen peroxide-inducible genes activator
COORDINATES: similar to AA sequence:RefSeq:WP_010659346.1
COORDINATES: similar to AA sequence:RefSeq:WP_012763234.1
COORDINATES: similar to AA sequence:RefSeq:WP_007607650.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958071.1
COORDINATES: similar to AA sequence:RefSeq:WP_007607642.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996438.1
COORDINATES: similar to AA sequence:RefSeq:WP_011655183.1
COORDINATES: similar to AA sequence:RefSeq:WP_007607639.1
COORDINATES: similar to AA sequence:RefSeq:WP_003520841.1
COORDINATES: similar to AA sequence:RefSeq:WP_007536676.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione-dependent disulfide-bond oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_017271641.1
amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012091475.1
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_018329334.1
COORDINATES: similar to AA sequence:RefSeq:WP_008884986.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970056.1
COORDINATES: similar to AA sequence:RefSeq:WP_018858026.1
COORDINATES: protein motif:HMM:TIGR01414.1
autotransporter domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015008706.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316322.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316323.1
COORDINATES: similar to AA sequence:RefSeq:WP_013850163.1
COORDINATES: similar to AA sequence:RefSeq:WP_018095917.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316324.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316325.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316326.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316327.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199841.1
nucleobase:cation symporter-2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015316329.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_015316330.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316331.1
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_015316332.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316333.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316334.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316335.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316336.1
COORDINATES: similar to AA sequence:RefSeq:WP_003586044.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501156.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339849.1
COORDINATES: similar to AA sequence:RefSeq:WP_011983060.1
COORDINATES: similar to AA sequence:RefSeq:WP_011983061.1
COORDINATES: protein motif:HMM:NF012772.2
GGDEF domain-containing phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_006954973.1
COORDINATES: similar to AA sequence:RefSeq:WP_018096201.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612405.1
COORDINATES: protein motif:HMM:NF023431.2
COORDINATES: similar to AA sequence:RefSeq:WP_007857760.1
alpha/beta hydrolase fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011751043.1
COORDINATES: similar to AA sequence:RefSeq:WP_008509445.1
COORDINATES: similar to AA sequence:RefSeq:WP_010914163.1
COORDINATES: similar to AA sequence:RefSeq:WP_009341170.1
COORDINATES: similar to AA sequence:RefSeq:WP_009341171.1
COORDINATES: similar to AA sequence:RefSeq:WP_010968682.1
COORDINATES: similar to AA sequence:RefSeq:WP_020010096.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956945.1
COORDINATES: similar to AA sequence:RefSeq:WP_011910510.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398612.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009906930.1
COORDINATES: similar to AA sequence:RefSeq:WP_052642687.1
COORDINATES: similar to AA sequence:RefSeq:WP_009817807.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014108319.1
COORDINATES: similar to AA sequence:RefSeq:WP_015501201.1
COORDINATES: protein motif:HMM:TIGR02971.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011441266.1
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011665936.1
COORDINATES: similar to AA sequence:RefSeq:WP_008837470.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011441263.1
COORDINATES: similar to AA sequence:RefSeq:WP_004125334.1
GO:0000287 - magnesium ion binding [Evidence IEA]
RuBisCO large subunit C-terminal-like domain-containing protein
bifunctional diguanylate cyclase/phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_014500906.1
COORDINATES: similar to AA sequence:RefSeq:WP_012476889.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_013636819.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008017323.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_013530417.1
COORDINATES: similar to AA sequence:RefSeq:WP_013636825.1
GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF022447.2
COORDINATES: similar to AA sequence:RefSeq:WP_019173704.1
COORDINATES: similar to AA sequence:RefSeq:WP_019173705.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019173706.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015837 - amine transport [Evidence IEA]
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019173707.1
COORDINATES: similar to AA sequence:RefSeq:WP_007826120.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_017956854.1
GO:0051907 - S-(hydroxymethyl)glutathione synthase activity [Evidence IEA]
GO:0046292 - formaldehyde metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013636824.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1
COORDINATES: similar to AA sequence:RefSeq:WP_015932817.1
COORDINATES: protein motif:HMM:NF018218.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003495445.1
COORDINATES: similar to AA sequence:RefSeq:WP_015923074.1
COORDINATES: similar to AA sequence:RefSeq:WP_011983064.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970376.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_076611752.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970372.1
IS6-like element ISRsp9 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_014528619.1
type II toxin-antitoxin system HigB family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010967516.1
COORDINATES: similar to AA sequence:RefSeq:WP_017965538.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517659.1
COORDINATES: similar to AA sequence:RefSeq:WP_006310239.1
COORDINATES: similar to AA sequence:RefSeq:WP_013761150.1
COORDINATES: similar to AA sequence:RefSeq:WP_019863579.1
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007627851.1
COORDINATES: similar to AA sequence:RefSeq:WP_006472568.1
COORDINATES: similar to AA sequence:RefSeq:WP_004675827.1
COORDINATES: similar to AA sequence:RefSeq:WP_018445736.1
GO:0008853 - exodeoxyribonuclease III activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003617683.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008838491.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636268.1
COORDINATES: protein motif:HMM:NF021508.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611960.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_076611472.1
COORDINATES: similar to AA sequence:RefSeq:WP_008829197.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516728.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611865.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013104582.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011424584.1
COORDINATES: similar to AA sequence:RefSeq:WP_018095647.1
COORDINATES: similar to AA sequence:RefSeq:WP_018495578.1
COORDINATES: similar to AA sequence:RefSeq:WP_015241299.1
COORDINATES: similar to AA sequence:RefSeq:WP_009466027.1
COORDINATES: similar to AA sequence:RefSeq:WP_005860857.1
COORDINATES: protein motif:HMM:NF014477.2
COORDINATES: similar to AA sequence:RefSeq:WP_009572787.1
COORDINATES: similar to AA sequence:RefSeq:WP_012706376.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014763336.1
COORDINATES: similar to AA sequence:RefSeq:WP_014763337.1
YVTN family beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_018237709.1
COORDINATES: similar to AA sequence:RefSeq:WP_008225411.1
COORDINATES: similar to AA sequence:RefSeq:WP_012179329.1
COORDINATES: similar to AA sequence:RefSeq:WP_008884223.1
COORDINATES: similar to AA sequence:RefSeq:WP_012179331.1
COORDINATES: similar to AA sequence:RefSeq:WP_020039925.1
COORDINATES: similar to AA sequence:RefSeq:WP_013067381.1
PQQ-dependent methanol/ethanol family dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_009572793.1
COORDINATES: similar to AA sequence:RefSeq:WP_012706386.1
FIST C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014332540.1
COORDINATES: similar to AA sequence:RefSeq:WP_011581412.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012177128.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0018189 - pyrroloquinoline quinone biosynthetic process [Evidence IEA]
pyrroloquinoline quinone precursor peptide PqqA
COORDINATES: similar to AA sequence:RefSeq:WP_011047240.1
pyrroloquinoline quinone biosynthesis protein PqqB
COORDINATES: similar to AA sequence:RefSeq:WP_008554764.1
COORDINATES: similar to AA sequence:RefSeq:WP_008281623.1
GO:0048038 - quinone binding [Evidence IEA]
pyrroloquinoline quinone biosynthesis peptide chaperone PqqD
COORDINATES: protein motif:HMM:TIGR02109.1
GO:0018149 - peptide cross-linking [Evidence IEA]; GO:0018189 - pyrroloquinoline quinone biosynthetic process [Evidence IEA]
pyrroloquinoline quinone biosynthesis protein PqqE
COORDINATES: similar to AA sequence:RefSeq:WP_012649102.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974838.1
GO:0016740 - transferase activity [Evidence IEA]