Shinella zoogloeoides strain ATCC 19623 plasmid unnamed1, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Shinella.
Cellulose-mediated floc formation by the activated sludge bacterium Shinella zoogloeoides ATCC 19623
Submitted (17-SEP-2021) Fisheries Research Institute, Anhui Academy of Agricultural Sciences, Nongke road 40, Hefei, Anhui 230031, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP086611.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. Version 2.04\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina Hiseq+PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/05/2022 05:09:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,735\nCDSs (total) :: 4,669\nGenes (coding) :: 4,586\nCDSs (with protein) :: 4,586\nGenes (RNA) :: 66\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 4\nPseudo Genes (total) :: 83\nCDSs (without protein) :: 83\nPseudo Genes (ambiguous residues) :: 0 of 83\nPseudo Genes (frameshifted) :: 17 of 83\nPseudo Genes (incomplete) :: 68 of 83\nPseudo Genes (internal stop) :: 11 of 83\nPseudo Genes (multiple problems) :: 12 of 83\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011578655.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012653006.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654073.1
COORDINATES: protein motif:HMM:NF039341.1
COORDINATES: similar to AA sequence:RefSeq:WP_012706750.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007752711.1
heme-degrading domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017264547.1
COORDINATES: similar to AA sequence:RefSeq:WP_011426659.1
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017961949.1
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018012334.1
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017263942.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_018426367.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006725445.1
COORDINATES: similar to AA sequence:RefSeq:WP_008872393.1
COORDINATES: similar to AA sequence:RefSeq:WP_003546569.1
metal/formaldehyde-sensitive transcriptional repressor
COORDINATES: similar to AA sequence:RefSeq:WP_011663838.1
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
CDF family Co(II)/Ni(II) efflux transporter DmeF
COORDINATES: similar to AA sequence:RefSeq:WP_011969240.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011427541.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011427540.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649510.1
COORDINATES: similar to AA sequence:RefSeq:WP_010661040.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649512.1
glycerol-3-phosphate dehydrogenase/oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_015886875.1
COORDINATES: similar to AA sequence:RefSeq:WP_016552117.1
COORDINATES: similar to AA sequence:RefSeq:WP_003562665.1
COORDINATES: similar to AA sequence:RefSeq:WP_012076967.1
COORDINATES: similar to AA sequence:RefSeq:WP_004437233.1
COORDINATES: similar to AA sequence:RefSeq:WP_003575953.1
COORDINATES: similar to AA sequence:RefSeq:WP_020009218.1
5-oxoprolinase/urea amidolyase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013761949.1
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: similar to AA sequence:RefSeq:WP_017275971.1
COORDINATES: similar to AA sequence:RefSeq:WP_017275970.1
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: protein motif:HMM:NF040115.1
COORDINATES: similar to AA sequence:RefSeq:WP_008068994.1
COORDINATES: similar to AA sequence:RefSeq:WP_013892226.1
COORDINATES: similar to AA sequence:RefSeq:WP_019860981.1
COORDINATES: similar to AA sequence:RefSeq:WP_006326272.1
COORDINATES: similar to AA sequence:RefSeq:WP_018391480.1
COORDINATES: similar to AA sequence:RefSeq:WP_019860988.1
COORDINATES: similar to AA sequence:RefSeq:WP_019171409.1
COORDINATES: similar to AA sequence:RefSeq:WP_008724158.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011355073.1
COORDINATES: similar to AA sequence:RefSeq:WP_003575233.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018326204.1
GO:0009486 - cytochrome bo3 ubiquinol oxidase activity [Evidence IEA]
GO:0015990 - electron transport coupled proton transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018326205.1
cytochrome o ubiquinol oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_007766014.1
cytochrome o ubiquinol oxidase subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_007536595.1
cytochrome o ubiquinol oxidase subunit IV
COORDINATES: similar to AA sequence:RefSeq:WP_007766008.1
COORDINATES: similar to AA sequence:RefSeq:WP_018096574.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018096573.1
COORDINATES: similar to AA sequence:RefSeq:WP_010968196.1
GO:0008556 - P-type potassium transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
potassium-transporting ATPase subunit KdpC
COORDINATES: similar to AA sequence:RefSeq:WP_011970239.1
GO:0031004 - potassium ion-transporting ATPase complex [Evidence IEA]
potassium-transporting ATPase subunit KdpB
COORDINATES: similar to AA sequence:RefSeq:WP_017277339.1
potassium-transporting ATPase subunit KdpA
COORDINATES: similar to AA sequence:RefSeq:WP_018448545.1
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003547822.1
GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives [Evidence IEA]
GO:0019301 - rhamnose catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012654481.1
COORDINATES: similar to AA sequence:RefSeq:WP_006728185.1
COORDINATES: similar to AA sequence:RefSeq:WP_007596626.1
COORDINATES: similar to AA sequence:RefSeq:WP_009363822.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0033296 - rhamnose binding [Evidence IEA]; GO:0015153 - rhamnose transmembrane transporter activity [Evidence IEA]
GO:0015762 - rhamnose transmembrane transport [Evidence IEA]
rhamnose ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011655152.1
COORDINATES: similar to AA sequence:RefSeq:WP_003507003.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_018246535.1
GO:0008740 - L-rhamnose isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011982523.1
COORDINATES: similar to AA sequence:RefSeq:WP_006470081.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003951179.1
COORDINATES: similar to AA sequence:RefSeq:WP_007879072.1
COORDINATES: similar to AA sequence:RefSeq:WP_010660519.1
COORDINATES: similar to AA sequence:RefSeq:WP_011982527.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018322862.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007603541.1
COORDINATES: protein motif:HMM:NF024627.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002966266.1
COORDINATES: similar to AA sequence:RefSeq:WP_004688900.1
GO:0032955 - regulation of division septum assembly [Evidence IEA]
cell division topological specificity factor MinE
COORDINATES: similar to AA sequence:RefSeq:WP_003506498.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0000918 - division septum site selection [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007068123.1
GO:0004857 - enzyme inhibitor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012563895.1
GO:0003842 - 1-pyrroline-5-carboxylate dehydrogenase activity [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0004657 - proline dehydrogenase activity [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017967559.1
Lrp/AsnC ligand binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014762197.1
COORDINATES: similar to AA sequence:RefSeq:WP_018327915.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007795523.1
GO:0004411 - homogentisate 1,2-dioxygenase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019170903.1
COORDINATES: similar to AA sequence:RefSeq:WP_003536759.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008126023.1
GO:0016034 - maleylacetoacetate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020092458.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_009859458.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_018494542.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_003571283.1
GO:0003867 - 4-aminobutyrate transaminase activity [Evidence IEA]
GO:0009448 - gamma-aminobutyric acid metabolic process [Evidence IEA]
4-aminobutyrate--2-oxoglutarate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_007528989.1
COORDINATES: similar to AA sequence:RefSeq:WP_006202030.1
COORDINATES: similar to AA sequence:RefSeq:WP_014332260.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493744.1
COORDINATES: similar to AA sequence:RefSeq:WP_014765621.1
COORDINATES: similar to AA sequence:RefSeq:WP_007537550.1
COORDINATES: protein motif:HMM:NF019998.2
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012235.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008875611.1
COORDINATES: similar to AA sequence:RefSeq:WP_018859534.1
COORDINATES: similar to AA sequence:RefSeq:WP_007537542.1
spermidine/putrescine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007801513.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007801511.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014029608.1
COORDINATES: similar to AA sequence:RefSeq:WP_007702098.1
COORDINATES: similar to AA sequence:RefSeq:WP_019402481.1
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Cu(I)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019995538.1
COORDINATES: similar to AA sequence:RefSeq:WP_012364874.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008840091.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007754053.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014765618.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018095779.1
COORDINATES: similar to AA sequence:RefSeq:WP_007597380.1
COORDINATES: similar to AA sequence:RefSeq:WP_012709045.1
COORDINATES: similar to AA sequence:RefSeq:WP_018425729.1
COORDINATES: similar to AA sequence:RefSeq:WP_018326715.1
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006724635.1
COORDINATES: similar to AA sequence:RefSeq:WP_008874499.1
COORDINATES: similar to AA sequence:RefSeq:WP_010909227.1
COORDINATES: similar to AA sequence:RefSeq:WP_007605947.1
COORDINATES: similar to AA sequence:RefSeq:WP_013168891.1
COORDINATES: similar to AA sequence:RefSeq:WP_006200799.1
COORDINATES: similar to AA sequence:RefSeq:WP_019620493.1
COORDINATES: similar to AA sequence:RefSeq:WP_003511103.1
COORDINATES: similar to AA sequence:RefSeq:WP_008840504.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015317674.1
COORDINATES: similar to AA sequence:RefSeq:WP_007874565.1
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002968052.1
MetQ/NlpA family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003528883.1
COORDINATES: similar to AA sequence:RefSeq:WP_010973895.1
methionine ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003531914.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957455.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595665.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735540.1
COORDINATES: similar to AA sequence:RefSeq:WP_007765228.1
COORDINATES: similar to AA sequence:RefSeq:WP_008529855.1
COORDINATES: similar to AA sequence:RefSeq:WP_018069338.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_015888285.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016557944.1
COORDINATES: similar to AA sequence:RefSeq:WP_006339666.1
COORDINATES: similar to AA sequence:RefSeq:WP_020809457.1
COORDINATES: similar to AA sequence:RefSeq:WP_003618845.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012708690.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556877.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011982556.1
COORDINATES: similar to AA sequence:RefSeq:WP_018431050.1
COORDINATES: similar to AA sequence:RefSeq:WP_004124334.1
COORDINATES: similar to AA sequence:RefSeq:WP_010660490.1
COORDINATES: similar to AA sequence:RefSeq:WP_017360456.1
COORDINATES: similar to AA sequence:RefSeq:WP_010660492.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014763984.1
COORDINATES: similar to AA sequence:RefSeq:WP_003554363.1
COORDINATES: similar to AA sequence:RefSeq:WP_006313271.1
GO:0005451 - monovalent cation:proton antiporter activity [Evidence IEA]
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]
monovalent cation/H+ antiporter subunit A
COORDINATES: similar to AA sequence:RefSeq:WP_012653663.1
COORDINATES: similar to AA sequence:RefSeq:WP_004110544.1
monovalent cation/H+ antiporter subunit D
COORDINATES: similar to AA sequence:RefSeq:WP_006726489.1
GO:0006812 - cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011112442.1
GO:0015075 - ion transmembrane transporter activity [Evidence IEA]
GO:0034220 - ion transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012653659.1
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation/H(+) antiporter subunit G
COORDINATES: similar to AA sequence:RefSeq:WP_018096123.1
COORDINATES: similar to AA sequence:RefSeq:WP_011140754.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis, and/or gluconeogenesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018236535.1
COORDINATES: similar to AA sequence:RefSeq:WP_007596704.1
COORDINATES: similar to AA sequence:RefSeq:WP_015340414.1
COORDINATES: similar to AA sequence:RefSeq:WP_006157901.1
COORDINATES: similar to AA sequence:RefSeq:WP_012041546.1
COORDINATES: similar to AA sequence:RefSeq:WP_008967393.1
COORDINATES: similar to AA sequence:RefSeq:WP_009072648.1
COORDINATES: similar to AA sequence:RefSeq:WP_004429888.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006728616.1
COORDINATES: similar to AA sequence:RefSeq:WP_019171833.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_004692439.1
GO:0097573 - glutathione oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004439016.1
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI
COORDINATES: similar to AA sequence:RefSeq:WP_007700571.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011982691.1
GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit beta
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_020559477.1
COORDINATES: similar to AA sequence:RefSeq:WP_012708593.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_013962532.1
COORDINATES: similar to AA sequence:RefSeq:WP_011567151.1
COORDINATES: similar to AA sequence:RefSeq:WP_013962533.1
COORDINATES: similar to AA sequence:RefSeq:WP_013068156.1
GO:0036361 - racemase activity, acting on amino acids and derivatives [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006133661.1
COORDINATES: similar to AA sequence:RefSeq:WP_004687478.1
COORDINATES: similar to AA sequence:RefSeq:WP_052096176.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003495445.1
COORDINATES: protein motif:HMM:NF014808.2
COORDINATES: similar to AA sequence:RefSeq:WP_010909515.1
COORDINATES: similar to AA sequence:RefSeq:WP_006490276.1
COORDINATES: similar to AA sequence:RefSeq:WP_010484834.1
NADH:flavin oxidoreductase/NADH oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012337035.1
GO:0016829 - lyase activity [Evidence IEA]
acetoacetate decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005131627.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_018192271.1
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF016274.2
COORDINATES: similar to AA sequence:RefSeq:WP_004692492.1
COORDINATES: similar to AA sequence:RefSeq:WP_006468393.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493982.1
GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875199.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129562.1
COORDINATES: similar to AA sequence:RefSeq:WP_013891507.1
GO:0008115 - sarcosine oxidase activity [Evidence IEA]
GO:0046653 - tetrahydrofolate metabolic process [Evidence IEA]
sarcosine oxidase subunit beta family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010913054.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913053.1
sarcosine oxidase subunit alpha family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018430990.1
sarcosine oxidase subunit gamma family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013532613.1
branched-chain amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018237327.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_020047907.1
COORDINATES: similar to AA sequence:RefSeq:WP_007536365.1
COORDINATES: similar to AA sequence:RefSeq:WP_007801384.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047910.1
BMP family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003538570.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654362.1
COORDINATES: similar to AA sequence:RefSeq:WP_003577851.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591746.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018857917.1
COORDINATES: protein motif:HMM:NF024180.2
COORDINATES: similar to AA sequence:RefSeq:WP_016557959.1
COORDINATES: similar to AA sequence:RefSeq:WP_020010082.1
GO:0004053 - arginase activity [Evidence IEA]
GO:0019547 - arginine catabolic process to ornithine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003508428.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011501979.1
COORDINATES: similar to AA sequence:RefSeq:WP_016557489.1
COORDINATES: similar to AA sequence:RefSeq:WP_011580135.1
COORDINATES: similar to AA sequence:RefSeq:WP_014242647.1
COORDINATES: similar to AA sequence:RefSeq:WP_014497178.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_020559317.1
alanine/glycine:cation symporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004652079.1
COORDINATES: similar to AA sequence:RefSeq:WP_008532160.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747520.1
COORDINATES: similar to AA sequence:RefSeq:WP_007599019.1
COORDINATES: similar to AA sequence:RefSeq:WP_007599016.1
COORDINATES: similar to AA sequence:RefSeq:WP_008834960.1
COORDINATES: similar to AA sequence:RefSeq:WP_013892684.1
COORDINATES: similar to AA sequence:RefSeq:WP_019172311.1
TetR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015315418.1
COORDINATES: similar to AA sequence:RefSeq:WP_006201239.1
COORDINATES: similar to AA sequence:RefSeq:WP_019172307.1
COORDINATES: similar to AA sequence:RefSeq:WP_006328118.1
COORDINATES: similar to AA sequence:RefSeq:WP_008873966.1
COORDINATES: similar to AA sequence:RefSeq:WP_007935457.1
COORDINATES: similar to AA sequence:RefSeq:WP_006328129.1
COORDINATES: protein motif:HMM:NF021593.2
COORDINATES: similar to AA sequence:RefSeq:WP_012706114.1
COORDINATES: similar to AA sequence:RefSeq:WP_007693942.1
COORDINATES: similar to AA sequence:RefSeq:WP_017960985.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_014838480.1
COORDINATES: similar to AA sequence:RefSeq:WP_011426663.1
COORDINATES: similar to AA sequence:RefSeq:WP_015917228.1
GO:0008746 - NAD(P)+ transhydrogenase activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]
Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_018896587.1
NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_013845081.1
COORDINATES: similar to AA sequence:RefSeq:WP_004441000.1
COORDINATES: similar to AA sequence:RefSeq:WP_018633870.1
COORDINATES: similar to AA sequence:RefSeq:WP_010975203.1
COORDINATES: similar to AA sequence:RefSeq:WP_008130911.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007068136.1
D-alanyl-D-alanine carboxypeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008495338.1
COORDINATES: similar to AA sequence:RefSeq:WP_008495339.1
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017270994.1
GO:0015087 - cobalt ion transmembrane transporter activity [Evidence IEA]; GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO:0006824 - cobalt ion transport [Evidence IEA]; GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611960.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_014857614.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012742.2
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010338984.1
GO:0004516 - nicotinate phosphoribosyltransferase activity [Evidence IEA]
GO:0019358 - nicotinate nucleotide salvage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018324101.1
COORDINATES: similar to AA sequence:RefSeq:WP_014331578.1
GO:0015411 - ABC-type taurine transporter transporter activity [Evidence IEA]; GO:0030977 - taurine binding [Evidence IEA]
GO:0015734 - taurine transport [Evidence IEA]
taurine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015887836.1
COORDINATES: similar to AA sequence:RefSeq:WP_007815891.1
COORDINATES: similar to AA sequence:RefSeq:WP_017968441.1
COORDINATES: similar to AA sequence:RefSeq:WP_015315120.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341009.1
bifunctional lysylphosphatidylglycerol flippase/synthetase MprF
COORDINATES: similar to AA sequence:RefSeq:WP_018239298.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591652.1
COORDINATES: protein motif:HMM:NF013884.2
COORDINATES: similar to AA sequence:RefSeq:WP_004108270.1
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: similar to AA sequence:RefSeq:WP_007007837.1
COORDINATES: similar to AA sequence:RefSeq:WP_013067659.1
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_007743575.1
COORDINATES: similar to AA sequence:RefSeq:WP_011244380.1
COORDINATES: protein motif:HMM:NF014732.2
exopolysaccharide transport family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003518249.1
COORDINATES: similar to AA sequence:RefSeq:WP_003498796.1
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
asparagine synthase (glutamine-hydrolyzing)
COORDINATES: similar to AA sequence:RefSeq:WP_003518245.1
COORDINATES: similar to AA sequence:RefSeq:WP_013850380.1
class I adenylate-forming enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012061276.1
GO:0008795 - NAD+ synthase activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018094286.1
COORDINATES: similar to AA sequence:RefSeq:WP_014872681.1
GO:0008783 - agmatinase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019857453.1
COORDINATES: similar to AA sequence:RefSeq:WP_008128151.1
lysophospholipid acyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012558579.1
COORDINATES: similar to AA sequence:RefSeq:WP_011426369.1
phosphatase PAP2/dual specificity phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018446758.1
bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012558582.1
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008884241.1
replication-associated recombination protein A
COORDINATES: similar to AA sequence:RefSeq:WP_018246864.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572243.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591864.1
COORDINATES: similar to AA sequence:RefSeq:WP_008530030.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_014329353.1
COORDINATES: similar to AA sequence:RefSeq:WP_006472221.1
COORDINATES: similar to AA sequence:RefSeq:WP_003511637.1
COORDINATES: similar to AA sequence:RefSeq:WP_018971940.1