Xenorhabdus doucetiae strain FRM16 plasmid XD_p, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Xenorhabdus.
Submitted (16-JUL-2013) Genoscope - CEA (Commissariat a l'energie atomique et aux energies alternatives) : BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr)
REFSEQ INFORMATION: The reference sequence is identical to\nFO704549.1.\nAnnotation results relative to BLAST similarities, COG\nassignations, enzymatic function prediction (PRIAM software), TMHMM\nand SignalP predictions, and synteny conservation (Syntonizer\nsoftware) are available in the MicroScope annotation system\nhttp://www.genoscope.cns.fr/agc/microscope.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 02:31:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,735\nCDSs (total) :: 3,633\nGenes (coding) :: 3,514\nCDSs (with protein) :: 3,514\nGenes (RNA) :: 102\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 76\nncRNAs :: 4\nPseudo Genes (total) :: 119\nCDSs (without protein) :: 119\nPseudo Genes (ambiguous residues) :: 0 of 119\nPseudo Genes (frameshifted) :: 53 of 119\nPseudo Genes (incomplete) :: 73 of 119\nPseudo Genes (internal stop) :: 28 of 119\nPseudo Genes (multiple problems) :: 32 of 119\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004243590.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
Hcp family type VI secretion system effector
COORDINATES: similar to AA sequence:RefSeq:WP_010848993.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_000072676.1
COORDINATES: similar to AA sequence:RefSeq:WP_010848995.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010848996.1
COORDINATES: similar to AA sequence:RefSeq:WP_016947203.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF016255.2
COORDINATES: similar to AA sequence:RefSeq:WP_010617912.1
COORDINATES: similar to AA sequence:RefSeq:WP_010849001.1
COORDINATES: protein motif:HMM:NF017454.2
type VI secretion system tube protein Hcp
COORDINATES: protein motif:HMM:NF025354.2