Burkholderia dolosa AU0158 chromosome 3, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.
Complete genome sequences for 59 burkholderia isolates, both pathogenic and near neighbor
Erratum:[Genome Announc. 2016;4(2). pii: e00313-16. doi: 10.1128/genomeA.00313-16. PMID: 27103731] Publication Status: Online-Only
Submitted (30-OCT-2014) Bioscience, Los Alamos National Laboratory, P.O. Box 1663, MS M888, Los Alamos, NM 87545, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP009794.1.\nThe DNA was obtained from USAMRIID.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 20-OCT-2014\nAssembly Method :: Newbler v. 2.6; Velvet v. 1.2.08; Allpaths\n v. 44837; Phrap v. SPS - 4.24; HGAP v.\n 2.2.0\nGenome Coverage :: 477x\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/13/2022 14:01:44\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,817\nCDSs (total) :: 5,731\nGenes (coding) :: 5,634\nCDSs (with protein) :: 5,634\nGenes (RNA) :: 86\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 97\nCDSs (without protein) :: 97\nPseudo Genes (ambiguous residues) :: 0 of 97\nPseudo Genes (frameshifted) :: 43 of 97\nPseudo Genes (incomplete) :: 78 of 97\nPseudo Genes (internal stop) :: 7 of 97\nPseudo Genes (multiple problems) :: 28 of 97\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Human Clinical (cystic fibrosis patient)
COORDINATES: similar to AA sequence:RefSeq:WP_013689641.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011000070.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006410453.1
COORDINATES: similar to AA sequence:RefSeq:WP_012336832.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405530.1
COORDINATES: similar to AA sequence:RefSeq:WP_006052099.1
zinc-binding alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012336835.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011549865.1
COORDINATES: similar to AA sequence:RefSeq:WP_006757164.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013341063.1
COORDINATES: similar to AA sequence:RefSeq:WP_011549868.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011549869.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006758840.1
COORDINATES: similar to AA sequence:RefSeq:WP_016348292.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011549890.1
COORDINATES: similar to AA sequence:RefSeq:WP_012336844.1
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014726157.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_006757042.1
COORDINATES: similar to AA sequence:RefSeq:WP_017335463.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0015614 - ABC-type D-xylose transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0015753 - D-xylose transmembrane transport [Evidence IEA]
D-xylose ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011490741.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015614 - ABC-type D-xylose transporter activity [Evidence IEA]; GO:0033222 - xylose binding [Evidence IEA]
D-xylose ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006397034.1
GO:0005515 - protein binding [Evidence IEA]; GO:0004856 - xylulokinase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0005997 - xylulose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011880506.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0009045 - xylose isomerase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015601299.1
COORDINATES: similar to AA sequence:RefSeq:WP_012216976.1
COORDINATES: similar to AA sequence:RefSeq:WP_009961057.1
succinate dehydrogenase/fumarate reductase iron-sulfur subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012372628.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405126.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405125.1
COORDINATES: similar to AA sequence:RefSeq:WP_006417153.1
COORDINATES: similar to AA sequence:RefSeq:WP_006498305.1
endonuclease/exonuclease/phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012217901.1
COORDINATES: similar to AA sequence:RefSeq:WP_006498311.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011879950.1
GO:0047471 - maltose alpha-D-glucosyltransferase activity [Evidence IEA]
GO:0005991 - trehalose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004521799.1
GO:0003844 - 1,4-alpha-glucan branching enzyme activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]; GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0005978 - glycogen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006413618.1
GO:0004133 - glycogen debranching enzyme activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012336632.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
malto-oligosyltrehalose trehalohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_011660501.1
GO:0004134 - 4-alpha-glucanotransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011545542.1
GO:0047470 - (1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011355858.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017330196.1
COORDINATES: similar to AA sequence:RefSeq:WP_006028428.1
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006399254.1
COORDINATES: similar to AA sequence:RefSeq:WP_017335110.1
COORDINATES: similar to AA sequence:RefSeq:WP_015604090.1
COORDINATES: similar to AA sequence:RefSeq:WP_015602995.1
COORDINATES: similar to AA sequence:RefSeq:WP_013696897.1
COORDINATES: protein motif:HMM:NF012488.2
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_013092629.1
cystathionine gamma-synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006406180.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218215.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218216.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012405527.1
COORDINATES: similar to AA sequence:RefSeq:WP_004543600.1
COORDINATES: similar to AA sequence:RefSeq:WP_014726000.1
lecithin retinol acyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012372538.1
COORDINATES: similar to AA sequence:RefSeq:WP_014726006.1
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012372536.1
1-phosphofructokinase family hexose kinase
COORDINATES: similar to AA sequence:RefSeq:WP_006488453.1
GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
adenosylcobalamin-dependent ribonucleoside-diphosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_012218231.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012218232.1
COORDINATES: similar to AA sequence:RefSeq:WP_011880371.1
COORDINATES: similar to AA sequence:RefSeq:WP_006488308.1
COORDINATES: similar to AA sequence:RefSeq:WP_014726019.1
COORDINATES: similar to AA sequence:RefSeq:WP_006415445.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006488262.1
GO:0016746 - acyltransferase activity [Evidence IEA]
bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014726022.1
COORDINATES: similar to AA sequence:RefSeq:WP_006752853.1
COORDINATES: similar to AA sequence:RefSeq:WP_006488373.1
COORDINATES: similar to AA sequence:RefSeq:WP_009968117.1
COORDINATES: similar to AA sequence:RefSeq:WP_006488472.1
GO:0008776 - acetate kinase activity [Evidence IEA]
GO:0006083 - acetate metabolic process [Evidence IEA]; GO:0006113 - fermentation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012218247.1
COORDINATES: similar to AA sequence:RefSeq:WP_011880393.1
COORDINATES: similar to AA sequence:RefSeq:WP_014726027.1
COORDINATES: similar to AA sequence:RefSeq:WP_006415441.1
COORDINATES: similar to AA sequence:RefSeq:WP_017329510.1
COORDINATES: similar to AA sequence:RefSeq:WP_017329411.1
COORDINATES: similar to AA sequence:RefSeq:WP_006488370.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
fumarate/nitrate reduction transcriptional regulator Fnr
COORDINATES: similar to AA sequence:RefSeq:WP_013698084.1
COORDINATES: similar to AA sequence:RefSeq:WP_014726032.1
COORDINATES: similar to AA sequence:RefSeq:WP_014726033.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218255.1
COORDINATES: similar to AA sequence:RefSeq:WP_011880401.1
COORDINATES: similar to AA sequence:RefSeq:WP_006488350.1
COORDINATES: similar to AA sequence:RefSeq:WP_009690622.1
COORDINATES: similar to AA sequence:RefSeq:WP_015603916.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372511.1
COORDINATES: similar to AA sequence:RefSeq:WP_017775764.1
COORDINATES: similar to AA sequence:RefSeq:WP_006415464.1
COORDINATES: similar to AA sequence:RefSeq:WP_006488364.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406159.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_076612266.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014899590.1
COORDINATES: similar to AA sequence:RefSeq:WP_019447380.1
COORDINATES: similar to AA sequence:RefSeq:WP_017232809.1
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR00711.1
COORDINATES: protein motif:HMM:NF024854.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01783.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF039621.1
COORDINATES: similar to AA sequence:RefSeq:WP_012339147.1
COORDINATES: similar to AA sequence:RefSeq:WP_010121699.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0030151 - molybdenum ion binding [Evidence IEA]; GO:0043546 - molybdopterin cofactor binding [Evidence IEA]; GO:0050626 - trimethylamine-N-oxide reductase (cytochrome c) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010111742.1
COORDINATES: similar to AA sequence:RefSeq:WP_017424944.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF018530.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020069753.1
GO:0015297 - antiporter activity [Evidence IEA]; GO:0070906 - aspartate:alanine antiporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012735098.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
bifunctional aspartate transaminase/aspartate 4-decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_004184655.1
COORDINATES: similar to AA sequence:RefSeq:WP_005797486.1
GO:0008998 - ribonucleoside-triphosphate reductase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006395259.1
anaerobic ribonucleoside-triphosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_008449162.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]; GO:0051353 - positive regulation of oxidoreductase activity [Evidence IEA]
anaerobic ribonucleoside-triphosphate reductase activating protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611481.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024750.2
Arm DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012372648.1
COORDINATES: similar to AA sequence:RefSeq:WP_006398950.1
phosphatidylserine decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014725705.1
COORDINATES: similar to AA sequence:RefSeq:WP_006761778.1
COORDINATES: similar to AA sequence:RefSeq:WP_011660511.1
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006498323.1
COORDINATES: similar to AA sequence:RefSeq:WP_012336624.1
COORDINATES: similar to AA sequence:RefSeq:WP_006398943.1
COORDINATES: similar to AA sequence:RefSeq:WP_012336622.1
GO:0015299 - solute:proton antiporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006767419.1
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012336620.1
GO:0045027 - DNA end binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006761661.1
COORDINATES: similar to AA sequence:RefSeq:WP_010120894.1
GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009978806.1
COORDINATES: similar to AA sequence:RefSeq:WP_012217887.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006407440.1
COORDINATES: similar to AA sequence:RefSeq:WP_006411764.1
COORDINATES: similar to AA sequence:RefSeq:WP_006498337.1
COORDINATES: similar to AA sequence:RefSeq:WP_011545560.1
COORDINATES: similar to AA sequence:RefSeq:WP_006407436.1
COORDINATES: similar to AA sequence:RefSeq:WP_006761504.1
COORDINATES: similar to AA sequence:RefSeq:WP_004523329.1
COORDINATES: similar to AA sequence:RefSeq:WP_006398925.1
COORDINATES: similar to AA sequence:RefSeq:WP_012733539.1
COORDINATES: protein motif:HMM:NF026981.2
COORDINATES: similar to AA sequence:RefSeq:WP_011545567.1
COORDINATES: similar to AA sequence:RefSeq:WP_011545760.1
COORDINATES: similar to AA sequence:RefSeq:WP_015876163.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006481458.1
COORDINATES: similar to AA sequence:RefSeq:WP_011545757.1
COORDINATES: similar to AA sequence:RefSeq:WP_006399280.1
COORDINATES: similar to AA sequence:RefSeq:WP_006498119.1
COORDINATES: similar to AA sequence:RefSeq:WP_007583115.1
COORDINATES: similar to AA sequence:RefSeq:WP_006159539.1
GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
N-acetyl-gamma-glutamyl-phosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_009916068.1
COORDINATES: similar to AA sequence:RefSeq:WP_006403790.1
COORDINATES: similar to AA sequence:RefSeq:WP_006767440.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012365736.1
COORDINATES: similar to AA sequence:RefSeq:WP_018008247.1
COORDINATES: similar to AA sequence:RefSeq:WP_012365738.1
COORDINATES: similar to AA sequence:RefSeq:WP_006484534.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011879863.1
COORDINATES: similar to AA sequence:RefSeq:WP_012217883.1
COORDINATES: similar to AA sequence:RefSeq:WP_011879861.1
COORDINATES: similar to AA sequence:RefSeq:WP_006398919.1
COORDINATES: similar to AA sequence:RefSeq:WP_011545572.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006398917.1
COORDINATES: similar to AA sequence:RefSeq:WP_010120910.1
COORDINATES: similar to AA sequence:RefSeq:WP_010120911.1
COORDINATES: similar to AA sequence:RefSeq:WP_006398914.1
COORDINATES: similar to AA sequence:RefSeq:WP_006761072.1
COORDINATES: similar to AA sequence:RefSeq:WP_006498363.1
COORDINATES: protein motif:HMM:NF013179.2
COORDINATES: similar to AA sequence:RefSeq:WP_006407421.1
COORDINATES: similar to AA sequence:RefSeq:WP_012336597.1
COORDINATES: similar to AA sequence:RefSeq:WP_011660547.1
COORDINATES: similar to AA sequence:RefSeq:WP_006754684.1
COORDINATES: similar to AA sequence:RefSeq:WP_011545584.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372699.1
COORDINATES: similar to AA sequence:RefSeq:WP_014725666.1
COORDINATES: similar to AA sequence:RefSeq:WP_011545587.1
carbamoyltransferase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006407413.1
COORDINATES: similar to AA sequence:RefSeq:WP_006755683.1
COORDINATES: similar to AA sequence:RefSeq:WP_006498377.1
COORDINATES: similar to AA sequence:RefSeq:WP_006755681.1
COORDINATES: similar to AA sequence:RefSeq:WP_011545592.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011545593.1
COORDINATES: similar to AA sequence:RefSeq:WP_006761716.1
COORDINATES: similar to AA sequence:RefSeq:WP_012336582.1
COORDINATES: similar to AA sequence:RefSeq:WP_004531104.1
COORDINATES: similar to AA sequence:RefSeq:WP_004557884.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481288.1
COORDINATES: similar to AA sequence:RefSeq:WP_006761712.1
COORDINATES: similar to AA sequence:RefSeq:WP_006767478.1
COORDINATES: similar to AA sequence:RefSeq:WP_012337541.1
GO:0140737 - encapsulin nanocompartment [Evidence IEA]
family 1 encapsulin nanocompartment shell protein
COORDINATES: similar to AA sequence:RefSeq:WP_006755575.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372719.1
COORDINATES: similar to AA sequence:RefSeq:WP_006407378.1
COORDINATES: similar to AA sequence:RefSeq:WP_006407376.1
COORDINATES: similar to AA sequence:RefSeq:WP_011349684.1
GO:0008777 - acetylornithine deacetylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006767485.1
COORDINATES: similar to AA sequence:RefSeq:WP_006414729.1
COORDINATES: similar to AA sequence:RefSeq:WP_011349681.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481299.1
COORDINATES: similar to AA sequence:RefSeq:WP_011349660.1
COORDINATES: similar to AA sequence:RefSeq:WP_003093053.1
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor [Evidence IEA]
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_006498424.1
COORDINATES: similar to AA sequence:RefSeq:WP_004633909.1
GO:0003994 - aconitate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
COORDINATES: similar to AA sequence:RefSeq:WP_014723956.1
COORDINATES: similar to AA sequence:RefSeq:WP_009770637.1
COORDINATES: similar to AA sequence:RefSeq:WP_008345128.1
COORDINATES: similar to AA sequence:RefSeq:WP_011518808.1
COORDINATES: similar to AA sequence:RefSeq:WP_012402864.1
COORDINATES: similar to AA sequence:RefSeq:WP_011661257.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012406150.1
COORDINATES: similar to AA sequence:RefSeq:WP_006751150.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006403937.1
COORDINATES: similar to AA sequence:RefSeq:WP_006403938.1
COORDINATES: similar to AA sequence:RefSeq:WP_006409888.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481292.1
COORDINATES: similar to AA sequence:RefSeq:WP_006753109.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372753.1
COORDINATES: similar to AA sequence:RefSeq:WP_006402923.1
COORDINATES: similar to AA sequence:RefSeq:WP_004528383.1
GO:0009325 - nitrate reductase complex [Evidence IEA]
GO:0008940 - nitrate reductase activity [Evidence IEA]
GO:0019645 - anaerobic electron transport chain [Evidence IEA]
respiratory nitrate reductase subunit gamma
COORDINATES: similar to AA sequence:RefSeq:WP_006402921.1
GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051131 - chaperone-mediated protein complex assembly [Evidence IEA]
nitrate reductase molybdenum cofactor assembly chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_011205549.1
GO:0009061 - anaerobic respiration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011660609.1
COORDINATES: similar to AA sequence:RefSeq:WP_006759173.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372760.1
GO:0003824 - catalytic activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012337505.1
COORDINATES: similar to AA sequence:RefSeq:WP_011879797.1
COORDINATES: similar to AA sequence:RefSeq:WP_006484605.1
COORDINATES: similar to AA sequence:RefSeq:WP_011879796.1
COORDINATES: similar to AA sequence:RefSeq:WP_006751182.1
COORDINATES: similar to AA sequence:RefSeq:WP_012337493.1
COORDINATES: similar to AA sequence:RefSeq:WP_006767512.1
GO:0004747 - ribokinase activity [Evidence IEA]
GO:0019303 - D-ribose catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006489743.1
GO:0015535 - fucose:proton symporter activity [Evidence IEA]
GO:0015756 - fucose transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011545735.1
COORDINATES: similar to AA sequence:RefSeq:WP_017335555.1
DNA-binding transcriptional repressor DeoR
COORDINATES: similar to AA sequence:RefSeq:WP_011349592.1
GO:0004139 - deoxyribose-phosphate aldolase activity [Evidence IEA]
GO:0009264 - deoxyribonucleotide catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006754549.1
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012337245.1
acetyl-CoA C-acyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015003297.1
electron transfer flavoprotein-ubiquinone oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_009904408.1
COORDINATES: protein motif:HMM:NF015415.2
COORDINATES: similar to AA sequence:RefSeq:WP_011660649.1
COORDINATES: similar to AA sequence:RefSeq:WP_006751156.1
COORDINATES: similar to AA sequence:RefSeq:WP_006498528.1
COORDINATES: similar to AA sequence:RefSeq:WP_006407320.1
COORDINATES: similar to AA sequence:RefSeq:WP_006484292.1
COORDINATES: similar to AA sequence:RefSeq:WP_007731526.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481451.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012732908.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009771473.1
COORDINATES: similar to AA sequence:RefSeq:WP_014725592.1
COORDINATES: similar to AA sequence:RefSeq:WP_013343393.1
COORDINATES: similar to AA sequence:RefSeq:WP_012217807.1
GO:0033743 - peptide-methionine (R)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (R)-S-oxide reductase MsrB
COORDINATES: similar to AA sequence:RefSeq:WP_006498597.1
COORDINATES: similar to AA sequence:RefSeq:WP_006402888.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: similar to AA sequence:RefSeq:WP_006402887.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011660855.1
GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006483642.1
COORDINATES: similar to AA sequence:RefSeq:WP_006412360.1
COORDINATES: similar to AA sequence:RefSeq:WP_006762734.1
COORDINATES: similar to AA sequence:RefSeq:WP_006764054.1
COORDINATES: similar to AA sequence:RefSeq:WP_001536669.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_009906954.1
COORDINATES: similar to AA sequence:RefSeq:WP_006765345.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
COORDINATES: similar to AA sequence:RefSeq:WP_006493901.1
COORDINATES: similar to AA sequence:RefSeq:WP_011879658.1
COORDINATES: similar to AA sequence:RefSeq:WP_012217789.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405536.1
COORDINATES: similar to AA sequence:RefSeq:WP_011549383.1
COORDINATES: similar to AA sequence:RefSeq:WP_012337180.1
gamma-glutamyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012217786.1
COORDINATES: similar to AA sequence:RefSeq:WP_011549376.1
COORDINATES: similar to AA sequence:RefSeq:WP_006767020.1
COORDINATES: similar to AA sequence:RefSeq:WP_006411387.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372114.1
COORDINATES: similar to AA sequence:RefSeq:WP_012337171.1
COORDINATES: similar to AA sequence:RefSeq:WP_011660880.1
COORDINATES: similar to AA sequence:RefSeq:WP_011660882.1
COORDINATES: similar to AA sequence:RefSeq:WP_006753026.1
GO:0004019 - adenylosuccinate synthase activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006416301.1
COORDINATES: similar to AA sequence:RefSeq:WP_006411406.1
COORDINATES: similar to AA sequence:RefSeq:WP_006753023.1
COORDINATES: similar to AA sequence:RefSeq:WP_011660886.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_006399349.1
COORDINATES: similar to AA sequence:RefSeq:WP_006497841.1
COORDINATES: similar to AA sequence:RefSeq:WP_006480999.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017335397.1
COORDINATES: similar to AA sequence:RefSeq:WP_006755317.1
COORDINATES: similar to AA sequence:RefSeq:WP_012337149.1
COORDINATES: similar to AA sequence:RefSeq:WP_006497848.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012337147.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481008.1
COORDINATES: similar to AA sequence:RefSeq:WP_006399334.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481010.1
COORDINATES: similar to AA sequence:RefSeq:WP_011879624.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372136.1
hydroxyectoine utilization dehydratase EutB
COORDINATES: similar to AA sequence:RefSeq:WP_006416307.1
COORDINATES: similar to AA sequence:RefSeq:WP_012337137.1
GO:0042400 - ectoine catabolic process [Evidence IEA]
DoeA (degradation of ectoine A) is also called EutD (ectoine utilization D); Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006405502.1
N(2)-acetyl-L-2,4-diaminobutanoate deacetylase DoeB
COORDINATES: similar to AA sequence:RefSeq:WP_012464827.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012372139.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_012218442.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012337129.1
COORDINATES: similar to AA sequence:RefSeq:WP_007590239.1
COORDINATES: similar to AA sequence:RefSeq:WP_012493661.1
GO:0004371 - glycerone kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006752193.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system tip protein TssI/VgrG
COORDINATES: similar to AA sequence:RefSeq:WP_012733122.1
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006416022.1
COORDINATES: similar to AA sequence:RefSeq:WP_006482386.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218403.1
RHS repeat-associated core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006752198.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372166.1
COORDINATES: similar to AA sequence:RefSeq:WP_006490961.1
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011350379.1
COORDINATES: similar to AA sequence:RefSeq:WP_014726283.1
branched-chain amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006497884.1
COORDINATES: similar to AA sequence:RefSeq:WP_006490948.1
COORDINATES: similar to AA sequence:RefSeq:WP_004206816.1
COORDINATES: similar to AA sequence:RefSeq:WP_006399227.1
COORDINATES: similar to AA sequence:RefSeq:WP_006490955.1
COORDINATES: similar to AA sequence:RefSeq:WP_006767064.1
organic hydroperoxide resistance protein
COORDINATES: similar to AA sequence:RefSeq:WP_006416006.1
COORDINATES: similar to AA sequence:RefSeq:WP_012337109.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372191.1
COORDINATES: similar to AA sequence:RefSeq:WP_006490956.1
COORDINATES: similar to AA sequence:RefSeq:WP_011350320.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0003955 - NAD(P)H dehydrogenase (quinone) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004525454.1
COORDINATES: similar to AA sequence:RefSeq:WP_011350318.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481061.1
COORDINATES: similar to AA sequence:RefSeq:WP_011549288.1
COORDINATES: similar to AA sequence:RefSeq:WP_006760669.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405387.1
COORDINATES: protein motif:HMM:NF014664.2
COORDINATES: similar to AA sequence:RefSeq:WP_006411408.1
COORDINATES: similar to AA sequence:RefSeq:WP_007748517.1
GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013092387.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012433402.1
substrate binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018434839.1
COORDINATES: similar to AA sequence:RefSeq:WP_011350230.1
beta-propeller fold lactonase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006760662.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481116.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012337063.1
COORDINATES: similar to AA sequence:RefSeq:WP_006051045.1
COORDINATES: similar to AA sequence:RefSeq:WP_006497969.1
COORDINATES: similar to AA sequence:RefSeq:WP_012337052.1
COORDINATES: similar to AA sequence:RefSeq:WP_011549246.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218326.1
COORDINATES: similar to AA sequence:RefSeq:WP_008347234.1
COORDINATES: similar to AA sequence:RefSeq:WP_012371971.1
COORDINATES: similar to AA sequence:RefSeq:WP_006759573.1
COORDINATES: similar to AA sequence:RefSeq:WP_020202506.1
COORDINATES: similar to AA sequence:RefSeq:WP_006767091.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012371967.1
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006767093.1
COORDINATES: similar to AA sequence:RefSeq:WP_011660685.1
COORDINATES: similar to AA sequence:RefSeq:WP_012433398.1
COORDINATES: similar to AA sequence:RefSeq:WP_006759901.1
COORDINATES: similar to AA sequence:RefSeq:WP_006409978.1
GO:0004650 - polygalacturonase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014726257.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014726256.1
COORDINATES: similar to AA sequence:RefSeq:WP_011350121.1
COORDINATES: similar to AA sequence:RefSeq:WP_011694956.1
COORDINATES: similar to AA sequence:RefSeq:WP_011661002.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011549183.1
COORDINATES: similar to AA sequence:RefSeq:WP_012336998.1
glycine betaine/L-proline transporter ProP
COORDINATES: similar to AA sequence:RefSeq:WP_012339490.1
COORDINATES: similar to AA sequence:RefSeq:WP_011547055.1
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006399103.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_012218312.1
COORDINATES: similar to AA sequence:RefSeq:WP_006399101.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006399100.1
methanol/ethanol family PQQ-dependent dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_014726244.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006755205.1
COORDINATES: similar to AA sequence:RefSeq:WP_011661039.1
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007178434.1
GO:0018189 - pyrroloquinoline quinone biosynthetic process [Evidence IEA]
pyrroloquinoline quinone precursor peptide PqqA
COORDINATES: similar to AA sequence:RefSeq:WP_011547063.1
pyrroloquinoline quinone biosynthesis protein PqqB
COORDINATES: similar to AA sequence:RefSeq:WP_014726239.1
COORDINATES: similar to AA sequence:RefSeq:WP_006751646.1
GO:0048038 - quinone binding [Evidence IEA]
pyrroloquinoline quinone biosynthesis peptide chaperone PqqD
COORDINATES: similar to AA sequence:RefSeq:WP_012218305.1
GO:0018149 - peptide cross-linking [Evidence IEA]; GO:0018189 - pyrroloquinoline quinone biosynthetic process [Evidence IEA]
pyrroloquinoline quinone biosynthesis protein PqqE
COORDINATES: similar to AA sequence:RefSeq:WP_008354002.1
COORDINATES: similar to AA sequence:RefSeq:WP_011880603.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481193.1
COORDINATES: similar to AA sequence:RefSeq:WP_009891042.1
COORDINATES: similar to AA sequence:RefSeq:WP_006026811.1
galactofuranose ABC transporter, permease protein YjfF
COORDINATES: similar to AA sequence:RefSeq:WP_011549174.1
COORDINATES: similar to AA sequence:RefSeq:WP_012336989.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372407.1
COORDINATES: similar to AA sequence:RefSeq:WP_015600442.1
COORDINATES: similar to AA sequence:RefSeq:WP_006026578.1
outer membrane protein assembly factor BamE
COORDINATES: similar to AA sequence:RefSeq:WP_004549145.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_006497593.1
COORDINATES: similar to AA sequence:RefSeq:WP_011545112.1
COORDINATES: similar to AA sequence:RefSeq:WP_010120599.1
COORDINATES: similar to AA sequence:RefSeq:WP_011545114.1
YaiO family outer membrane beta-barrel protein
COORDINATES: similar to AA sequence:RefSeq:WP_012328268.1
COORDINATES: similar to AA sequence:RefSeq:WP_011660389.1
COORDINATES: similar to AA sequence:RefSeq:WP_010112191.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: similar to AA sequence:RefSeq:WP_012336984.1
GO:0009380 - excinuclease repair complex [Evidence IEA]
GO:0009381 - excinuclease ABC activity [Evidence IEA]
GO:0006289 - nucleotide-excision repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012406050.1
COORDINATES: similar to AA sequence:RefSeq:WP_011880542.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372322.1
COORDINATES: similar to AA sequence:RefSeq:WP_004193627.1
COORDINATES: similar to AA sequence:RefSeq:WP_011661156.1
COORDINATES: similar to AA sequence:RefSeq:WP_006498084.1
COORDINATES: similar to AA sequence:RefSeq:WP_012336897.1
COORDINATES: similar to AA sequence:RefSeq:WP_006753344.1
COORDINATES: similar to AA sequence:RefSeq:WP_011349894.1
COORDINATES: similar to AA sequence:RefSeq:WP_006483615.1
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006498089.1
COORDINATES: similar to AA sequence:RefSeq:WP_015603420.1
COORDINATES: similar to AA sequence:RefSeq:WP_011549054.1
type II and III secretion system protein family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011661166.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372339.1
pilus assembly protein TadG-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_011880526.1
TadE/TadG family type IV pilus assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_011549050.1
COORDINATES: similar to AA sequence:RefSeq:WP_009908183.1
COORDINATES: similar to AA sequence:RefSeq:WP_006486287.1
COORDINATES: similar to AA sequence:RefSeq:WP_004537325.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012336884.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218416.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218417.1
COORDINATES: similar to AA sequence:RefSeq:WP_012337037.1
COORDINATES: similar to AA sequence:RefSeq:WP_015001834.1
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: similar to AA sequence:RefSeq:WP_013587354.1
COORDINATES: similar to AA sequence:RefSeq:WP_017455419.1
COORDINATES: similar to AA sequence:RefSeq:WP_014725535.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00442
guanidine-I (ykkC/yxkD leader) riboswitch; Guanidine-I riboswitches control genes whose products are involved in modification or pumping out guanidine as a toxic compound from bacteria; This is class of guanidine riboswitches is based on the ykkC/yxkD leader; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_006485567.1
urea carboxylase-associated family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017774959.1
COORDINATES: similar to AA sequence:RefSeq:WP_006485552.1
GO:0004847 - urea carboxylase activity [Evidence IEA]
GO:0019627 - urea metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006498064.1
GO:0004039 - allophanate hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006485545.1
COORDINATES: similar to AA sequence:RefSeq:WP_011549110.1
COORDINATES: similar to AA sequence:RefSeq:WP_006397982.1
COORDINATES: similar to AA sequence:RefSeq:WP_006397981.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006753976.1
GO:0015293 - symporter activity [Evidence IEA]
GO:0006835 - dicarboxylic acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006397980.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372448.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011661277.1
COORDINATES: similar to AA sequence:RefSeq:WP_011548512.1
COORDINATES: similar to AA sequence:RefSeq:WP_011695174.1
COORDINATES: similar to AA sequence:RefSeq:WP_020067818.1
COORDINATES: similar to AA sequence:RefSeq:WP_006047081.1
This protein belongs to the uracil DNA glycosylase superfamily, members of which act in excision repair of DNA. However, it belongs more specifically to UdgX branch, whose founding member was found to bind uracil in DNA (where it does not belong), without cleaving it, appears to promote DNA repair by a pathway involving RecA, rather than base excision; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012493720.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405750.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405747.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405746.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405745.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405744.1
COORDINATES: protein motif:HMM:NF015210.2
COORDINATES: protein motif:HMM:NF016488.2
COORDINATES: similar to AA sequence:RefSeq:WP_012493759.1
COORDINATES: similar to AA sequence:RefSeq:WP_012493760.1
COORDINATES: similar to AA sequence:RefSeq:WP_006485387.1
COORDINATES: similar to AA sequence:RefSeq:WP_006498288.1
COORDINATES: similar to AA sequence:RefSeq:WP_006498289.1
COORDINATES: similar to AA sequence:RefSeq:WP_013338331.1
COORDINATES: similar to AA sequence:RefSeq:WP_011546756.1
COORDINATES: similar to AA sequence:RefSeq:WP_013590941.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013590942.1
COORDINATES: similar to AA sequence:RefSeq:WP_013590943.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736303.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071555.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_013590946.1
COORDINATES: similar to AA sequence:RefSeq:WP_010089878.1
COORDINATES: similar to AA sequence:RefSeq:WP_012328548.1
COORDINATES: similar to AA sequence:RefSeq:WP_015602748.1
COORDINATES: similar to AA sequence:RefSeq:WP_009916965.1
MotA/TolQ/ExbB proton channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017777874.1
COORDINATES: similar to AA sequence:RefSeq:WP_012328556.1
COORDINATES: similar to AA sequence:RefSeq:WP_011487697.1
COORDINATES: similar to AA sequence:RefSeq:WP_006475983.1
COORDINATES: similar to AA sequence:RefSeq:WP_006767185.1
COORDINATES: similar to AA sequence:RefSeq:WP_006475985.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405788.1
GO:0015833 - peptide transport [Evidence IEA]
dipeptide ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF012656.2
COORDINATES: protein motif:HMM:NF024375.2
COORDINATES: similar to AA sequence:RefSeq:WP_012372677.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372676.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372675.1
COORDINATES: similar to AA sequence:RefSeq:WP_017777611.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372673.1
COORDINATES: similar to AA sequence:RefSeq:WP_007863733.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372671.1
COORDINATES: protein motif:HMM:NF015831.2
COORDINATES: protein motif:HMM:NF017476.2
COORDINATES: similar to AA sequence:RefSeq:WP_006405786.1
GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006767198.1
COORDINATES: similar to AA sequence:RefSeq:WP_006767199.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405783.1
HoxN/HupN/NixA family nickel/cobalt transporter
COORDINATES: similar to AA sequence:RefSeq:WP_012366386.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405781.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405780.1
COORDINATES: similar to AA sequence:RefSeq:WP_006757458.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405777.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405775.1
COORDINATES: similar to AA sequence:RefSeq:WP_006757456.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405773.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405771.1
COORDINATES: similar to AA sequence:RefSeq:WP_006411957.1
heavy metal response regulator transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_012336575.1
GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006405767.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405766.1
COORDINATES: similar to AA sequence:RefSeq:WP_004192119.1
COORDINATES: similar to AA sequence:RefSeq:WP_011545695.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405763.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405762.1
COORDINATES: similar to AA sequence:RefSeq:WP_011658950.1
COORDINATES: similar to AA sequence:RefSeq:WP_012339608.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405759.1
COORDINATES: similar to AA sequence:RefSeq:WP_014724883.1
COORDINATES: similar to AA sequence:RefSeq:WP_006767215.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405756.1
glycine betaine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006482417.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405754.1
oxygen-insensitive NAD(P)H-dependent nitroreductase NfsB
COORDINATES: similar to AA sequence:RefSeq:WP_006482453.1
L-dopachrome tautomerase-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_006482443.1
COORDINATES: similar to AA sequence:RefSeq:WP_012493814.1
COORDINATES: similar to AA sequence:RefSeq:WP_011881306.1
COORDINATES: similar to AA sequence:RefSeq:WP_006482421.1
N-acyl homoserine lactonase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014724394.1
COORDINATES: similar to AA sequence:RefSeq:WP_006413582.1
COORDINATES: similar to AA sequence:RefSeq:WP_006029531.1
COORDINATES: similar to AA sequence:RefSeq:WP_011695164.1
T6SS immunity protein Tli4 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006029250.1
COORDINATES: similar to AA sequence:RefSeq:WP_013696215.1
COORDINATES: similar to AA sequence:RefSeq:WP_006767227.1
COORDINATES: similar to AA sequence:RefSeq:WP_015875782.1
COORDINATES: similar to AA sequence:RefSeq:WP_012336742.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013698427.1
COORDINATES: similar to AA sequence:RefSeq:WP_018431982.1
COORDINATES: similar to AA sequence:RefSeq:WP_013338237.1
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: protein motif:HMM:NF013434.2
COORDINATES: protein motif:HMM:NF019887.2
COORDINATES: protein motif:HMM:NF023508.2
COORDINATES: similar to AA sequence:RefSeq:WP_006483322.1
COORDINATES: similar to AA sequence:RefSeq:WP_012337491.1
COORDINATES: similar to AA sequence:RefSeq:WP_018437048.1
COORDINATES: similar to AA sequence:RefSeq:WP_018925962.1
COORDINATES: similar to AA sequence:RefSeq:WP_015877806.1
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF012870.2
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_006492556.1
IS256-like element ISBcen18 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_076611846.1
COORDINATES: similar to AA sequence:RefSeq:WP_009898207.1
COORDINATES: similar to AA sequence:RefSeq:WP_004548975.1
COORDINATES: protein motif:HMM:NF026910.2
COORDINATES: similar to AA sequence:RefSeq:WP_011658787.1
COORDINATES: similar to AA sequence:RefSeq:WP_011545659.1
COORDINATES: similar to AA sequence:RefSeq:WP_012337488.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012337486.1
COORDINATES: similar to AA sequence:RefSeq:WP_010108042.1
COORDINATES: similar to AA sequence:RefSeq:WP_011545664.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481360.1
COORDINATES: similar to AA sequence:RefSeq:WP_011352118.1
COORDINATES: similar to AA sequence:RefSeq:WP_011545667.1
pyridine nucleotide-disulfide oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_011880434.1
COORDINATES: similar to AA sequence:RefSeq:WP_018003996.1
COORDINATES: similar to AA sequence:RefSeq:WP_007577251.1
COORDINATES: similar to AA sequence:RefSeq:WP_013951991.1
COORDINATES: similar to AA sequence:RefSeq:WP_014726102.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481364.1
COORDINATES: similar to AA sequence:RefSeq:WP_006498476.1
COORDINATES: similar to AA sequence:RefSeq:WP_011880441.1
COORDINATES: similar to AA sequence:RefSeq:WP_010100311.1
COORDINATES: similar to AA sequence:RefSeq:WP_011545671.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481369.1
COORDINATES: similar to AA sequence:RefSeq:WP_006760334.1
COORDINATES: similar to AA sequence:RefSeq:WP_012337473.1
COORDINATES: similar to AA sequence:RefSeq:WP_011694985.1
COORDINATES: similar to AA sequence:RefSeq:WP_012371995.1
COORDINATES: similar to AA sequence:RefSeq:WP_011545679.1
COORDINATES: similar to AA sequence:RefSeq:WP_006498486.1
COORDINATES: similar to AA sequence:RefSeq:WP_012337467.1
COORDINATES: similar to AA sequence:RefSeq:WP_014726114.1
COORDINATES: similar to AA sequence:RefSeq:WP_013698048.1
COORDINATES: similar to AA sequence:RefSeq:WP_010100292.1
COORDINATES: similar to AA sequence:RefSeq:WP_012337459.1
COORDINATES: similar to AA sequence:RefSeq:WP_012336870.1
COORDINATES: similar to AA sequence:RefSeq:WP_011661238.1
COORDINATES: similar to AA sequence:RefSeq:WP_006409443.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006481264.1
COORDINATES: similar to AA sequence:RefSeq:WP_011545453.1
COORDINATES: similar to AA sequence:RefSeq:WP_006410174.1
COORDINATES: similar to AA sequence:RefSeq:WP_006408582.1
COORDINATES: protein motif:HMM:NF011898.1
COORDINATES: similar to AA sequence:RefSeq:WP_012493736.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405171.1
COORDINATES: similar to AA sequence:RefSeq:WP_006489171.1
COORDINATES: similar to AA sequence:RefSeq:WP_018432195.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
ATP-dependent Clp protease ATP-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006498221.1
COORDINATES: similar to AA sequence:RefSeq:WP_006489185.1
COORDINATES: similar to AA sequence:RefSeq:WP_006481271.1
COORDINATES: similar to AA sequence:RefSeq:WP_011661407.1
COORDINATES: protein motif:HMM:NF013257.2
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: similar to AA sequence:RefSeq:WP_006399003.1
COORDINATES: similar to AA sequence:RefSeq:WP_013428800.1
COORDINATES: similar to AA sequence:RefSeq:WP_011880019.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006489158.1
COORDINATES: similar to AA sequence:RefSeq:WP_006498246.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372589.1
COORDINATES: similar to AA sequence:RefSeq:WP_012493749.1
COORDINATES: similar to AA sequence:RefSeq:WP_006486261.1
COORDINATES: similar to AA sequence:RefSeq:WP_006498259.1
COORDINATES: similar to AA sequence:RefSeq:WP_006498261.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405154.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405153.1
COORDINATES: similar to AA sequence:RefSeq:WP_011879984.1
COORDINATES: similar to AA sequence:RefSeq:WP_006761991.1
COORDINATES: similar to AA sequence:RefSeq:WP_012493752.1
COORDINATES: similar to AA sequence:RefSeq:WP_012217920.1
COORDINATES: similar to AA sequence:RefSeq:WP_006483457.1
low affinity iron permease family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011661431.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405145.1
COORDINATES: similar to AA sequence:RefSeq:WP_006398980.1
COORDINATES: similar to AA sequence:RefSeq:WP_006498267.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372597.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405141.1
gluconate 2-dehydrogenase subunit 3 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011879975.1
COORDINATES: similar to AA sequence:RefSeq:WP_006498270.1
COORDINATES: similar to AA sequence:RefSeq:WP_011545497.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
thiamine pyrophosphate-requiring protein
COORDINATES: similar to AA sequence:RefSeq:WP_006767300.1
COORDINATES: similar to AA sequence:RefSeq:WP_006398970.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012372605.1
COORDINATES: similar to AA sequence:RefSeq:WP_011695019.1
COORDINATES: similar to AA sequence:RefSeq:WP_012336687.1
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: similar to AA sequence:RefSeq:WP_011519593.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372613.1
COORDINATES: similar to AA sequence:RefSeq:WP_012336679.1
COORDINATES: similar to AA sequence:RefSeq:WP_006485361.1
benzoate 1,2-dioxygenase electron transfer component BenC
COORDINATES: similar to AA sequence:RefSeq:WP_011695017.1
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012432614.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011853256.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579809.1
COORDINATES: similar to AA sequence:RefSeq:WP_012733833.1
COORDINATES: similar to AA sequence:RefSeq:WP_011549831.1
COORDINATES: similar to AA sequence:RefSeq:WP_012427751.1
COORDINATES: similar to AA sequence:RefSeq:WP_007579813.1
COORDINATES: similar to AA sequence:RefSeq:WP_017425321.1
COORDINATES: similar to AA sequence:RefSeq:WP_011661232.1
COORDINATES: similar to AA sequence:RefSeq:WP_013590964.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372398.1
COORDINATES: similar to AA sequence:RefSeq:WP_012372397.1
COORDINATES: similar to AA sequence:RefSeq:WP_011695039.1
COORDINATES: similar to AA sequence:RefSeq:WP_017424675.1
COORDINATES: similar to AA sequence:RefSeq:WP_017335753.1
COORDINATES: similar to AA sequence:RefSeq:WP_011661225.1
COORDINATES: similar to AA sequence:RefSeq:WP_006762108.1
COORDINATES: similar to AA sequence:RefSeq:WP_011549842.1
COORDINATES: similar to AA sequence:RefSeq:WP_006482807.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011880483.1
COORDINATES: similar to AA sequence:RefSeq:WP_006749695.1
COORDINATES: similar to AA sequence:RefSeq:WP_011880485.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010100339.1