Natronomonas pharaonis DSM 2160 plasmid PL131, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Natronomonas.
Living with two extremes: conclusions from the genome sequence of Natronomonas pharaonis
Submitted (28-JAN-2005) Pfeiffer F., Max-Planck-Institute of Biochemistry, Dept. Membrane Biochemistry, Am Klopferspitz 18, D-82152 Martinsried, GERMANY
REFSEQ INFORMATION: The reference sequence is identical to\nCR936258.1.\nClone requests: fpf@rzg.mpg.de.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/30/2022 01:11:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,883\nCDSs (total) :: 2,832\nGenes (coding) :: 2,803\nCDSs (with protein) :: 2,803\nGenes (RNA) :: 51\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 2\nPseudo Genes (total) :: 29\nCDSs (without protein) :: 29\nPseudo Genes (ambiguous residues) :: 0 of 29\nPseudo Genes (frameshifted) :: 6 of 29\nPseudo Genes (incomplete) :: 27 of 29\nPseudo Genes (internal stop) :: 1 of 29\nPseudo Genes (multiple problems) :: 5 of 29\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011324389.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
ISH6-like element ISNph3 family transposase
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007143097.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014053110.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094346.1
COORDINATES: similar to AA sequence:RefSeq:WP_011572759.1
COORDINATES: similar to AA sequence:RefSeq:WP_006066879.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014863537.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007260577.1
COORDINATES: similar to AA sequence:RefSeq:WP_014557034.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00229.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006107375.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143366.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143367.1
COORDINATES: similar to AA sequence:RefSeq:WP_006107374.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667463.1
COORDINATES: similar to AA sequence:RefSeq:WP_006056392.1
COORDINATES: similar to AA sequence:RefSeq:WP_006180166.1
COORDINATES: protein motif:HMM:NF016362.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009762213.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011324411.1
COORDINATES: similar to AA sequence:RefSeq:WP_012944562.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_015233540.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006066982.1
COORDINATES: similar to AA sequence:RefSeq:WP_011322692.1
IS1595-like element ISNph2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004965093.1
COORDINATES: similar to AA sequence:RefSeq:WP_007141825.1
COORDINATES: similar to AA sequence:RefSeq:WP_007141826.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090836.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015408752.1
COORDINATES: similar to AA sequence:RefSeq:WP_007345478.1
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF014505.2
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015790165.1
low molecular weight phosphatase family protein
COORDINATES: protein motif:HMM:NF014010.2
COORDINATES: similar to AA sequence:RefSeq:WP_004514877.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0051049 - regulation of transport [Evidence IEA]
phosphate signaling complex protein PhoU
COORDINATES: similar to AA sequence:RefSeq:WP_004597992.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter ATP-binding protein PstB
COORDINATES: similar to AA sequence:RefSeq:WP_008162085.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004215511.1
phosphate ABC transporter permease subunit PstC
COORDINATES: similar to AA sequence:RefSeq:WP_015233706.1
PstS family phosphate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008165194.1
Lrp/AsnC family transcriptional regulator
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_006826115.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142149.1
COORDINATES: similar to AA sequence:RefSeq:WP_011324439.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004514860.1
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]
GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate ABC transporter, permease protein PhnE
COORDINATES: similar to AA sequence:RefSeq:WP_005577328.1
COORDINATES: similar to AA sequence:RefSeq:WP_011324443.1
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
phosphonate ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF024376.2
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0043168 - anion binding [Evidence IEA]; GO:0043225 - ATPase-coupled inorganic anion transmembrane transporter activity [Evidence IEA]
phosphate/phosphite/phosphonate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006882517.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0033221 - ATPase-coupled urea transmembrane transporter activity [Evidence IEA]; GO:0033219 - urea binding [Evidence IEA]
GO:0015840 - urea transport [Evidence IEA]
urea ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015788507.1
COORDINATES: similar to AA sequence:RefSeq:WP_008421774.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004216178.1
COORDINATES: similar to AA sequence:RefSeq:WP_015319620.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054798.1
COORDINATES: similar to AA sequence:RefSeq:WP_008003431.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010612337.1
COORDINATES: protein motif:HMM:TIGR01766.2
COORDINATES: similar to AA sequence:RefSeq:WP_017343936.1
COORDINATES: similar to AA sequence:RefSeq:WP_004267697.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524786.1
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006667194.1
COORDINATES: similar to AA sequence:RefSeq:WP_011324459.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807516.1
GO:0140110 - transcription regulator activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012807515.1
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_011324463.1
GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_012289734.1
COORDINATES: similar to AA sequence:RefSeq:WP_004214482.1
COORDINATES: similar to AA sequence:RefSeq:WP_005559993.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895873.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007983209.1
COORDINATES: similar to AA sequence:RefSeq:WP_008097257.1
COORDINATES: similar to AA sequence:RefSeq:WP_006055885.1
aldehyde ferredoxin oxidoreductase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006649504.1
aspartate aminotransferase family protein
COORDINATES: protein motif:HMM:NF024850.2
amino acid ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF014684.2
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_012872018.1
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_006066160.1
COORDINATES: similar to AA sequence:RefSeq:WP_013879106.1
COORDINATES: protein motif:HMM:NF012346.2
COORDINATES: similar to AA sequence:RefSeq:WP_012660246.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_011570728.1
cryptochrome/deoxyribodipyrimidine photo-lyase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007260724.1
isocitrate lyase/PEP mutase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008418080.1
COORDINATES: similar to AA sequence:RefSeq:WP_005557649.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008418084.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008418087.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1
COORDINATES: similar to AA sequence:RefSeq:WP_008307190.1
COORDINATES: similar to AA sequence:RefSeq:WP_014040201.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533640.1
COORDINATES: similar to AA sequence:RefSeq:WP_004041757.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143856.1
COORDINATES: similar to AA sequence:RefSeq:WP_015911446.1
COORDINATES: similar to AA sequence:RefSeq:WP_011324502.1
IS5-like element ISNph4 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_015233308.1
COORDINATES: similar to AA sequence:RefSeq:WP_008893945.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067904.1
GO:0004357 - glutamate-cysteine ligase activity [Evidence IEA]
GO:0042398 - cellular modified amino acid biosynthetic process [Evidence IEA]
glutamate-cysteine ligase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018257587.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006671592.1
formate/nitrite transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005533736.1
COORDINATES: similar to AA sequence:RefSeq:WP_011324512.1
GO:0004519 - endonuclease activity [Evidence IEA]