Alosa sapidissima mitochondrion, complete genome.
type: Entry
definition: Alosa sapidissima mitochondrion, complete genome.
sequence version: NC_014690.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_014690.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Alosa sapidissima (American shad)
organism: Alosa sapidissima
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Alosa.
reference: 1
references: 21314242
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to HQ331537.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16697
topology: circular
so has quality: SO_0000988
location: 1..16697
location: region:1-16697:1
RO_0002162: 34773

NC_014690
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Mitochondrial genome of the American shad Alosa sapidissima
author: Bi, Y.H.
author: Chen, X.W.
journal: Mitochondrial DNA 22 (1-2), 9-11 (2011)
pubmed: 21314242

21314242
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (18-NOV-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Chen, X.
journal: Submitted (01-OCT-2010) College of Fisheries and Life Science, Shanghai Ocean University, No.999, Huchenghuan Road, Shanghai, Shanghai 201306, P. R. China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16697:1
position: 16697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16697:1:source
so part of: sequence
organism: Alosa sapidissima
organelle: mitochondrion
mol type: genomic DNA

34773
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 34773
product: tRNA-Phe
so part of: sequence
location: 1..69
location: region:1-69:1
so has part: feature:1-69:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-69:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 34773
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 70..1021
location: region:70-1021:1
so has part: feature:70-1021:1:region

position:70:1
position: 70
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1021:1
position: 1021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70-1021:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 34773
product: tRNA-Val
so part of: sequence
location: 1022..1093
location: region:1022-1093:1
so has part: feature:1022-1093:1:region

position:1022:1
position: 1022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1093:1
position: 1093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1022-1093:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 34773
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1094..2777
location: region:1094-2777:1
so has part: feature:1094-2777:1:region

position:1094:1
position: 1094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2777:1
position: 2777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1094-2777:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 34773
product: tRNA-Leu
so part of: sequence
location: 2778..2854
location: region:2778-2854:1
so has part: feature:2778-2854:1:region

position:2778:1
position: 2778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2854:1
position: 2854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2778-2854:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 34773
gene: ND1
so part of: sequence
location: 2855..3829
location: region:2855-3829:1
so has part: feature:2855-3829:1:exon
subclass of: SO_0000010

9978345
type: Gene
SIO_000068: ncbigene

position:2855:1
position: 2855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3829:1
position: 3829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2855-3829:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 34773
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MLHIIMAHIINPLAYIVPVLLAVAFLTLIERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPTLALTLALTLWAPLPLPFPVTDLNLSMLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVALGLILLCTIVFTGGFTLSMFSITQEGIWLLAPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILFMNTLSAVLFMGASHFPSFPEFTTISIMFKAALLSGLFLWVRASYPRFRYDQLMHLVWKNFLPLTLALILWHISLPVGTAGLPPQF
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2855..3829
location: region:2855-3829:1
so has part: feature:2855-3829:1:exon

YP_004021549.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2855-3829:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 34773
product: tRNA-Ile
so part of: sequence
location: 3838..3909
location: region:3838-3909:1
so has part: feature:3838-3909:1:region

position:3838:1
position: 3838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3909:1
position: 3909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3838-3909:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 34773
product: tRNA-Gln
so part of: sequence
location: complement(3909..3979)
location: region:3909-3979:-1
so has part: feature:3909-3979:-1:region

position:3909:-1
position: 3909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3979:-1
position: 3979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3909-3979:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 34773
product: tRNA-Met
so part of: sequence
location: 3979..4047
location: region:3979-4047:1
so has part: feature:3979-4047:1:region

position:3979:1
position: 3979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4047:1
position: 4047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3979-4047:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 34773
gene: ND2
so part of: sequence
location: 4048..5092
location: region:4048-5092:1
so has part: feature:4048-5092:1:exon
subclass of: SO_0000010

9978346
type: Gene
SIO_000068: ncbigene

position:4048:1
position: 4048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5092:1
position: 5092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4048-5092:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 34773
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5092,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPYVLTILLSSLGLGTTMTFASSHWLLAWMGLEINTLAIVPMMAYQHHPRAVEATTKYFLTQATAAAMLLFASTTNAWITGQWEITQLSHPVASSIAITALALKIGLAPMHACRSTILQGITLTTGLVLSTWQKLAPFALILQVADNAHPYLLTTLAISSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVAQMAPQMTLMALITYIAMTTAAFLTLNNVGSTKTITLTSAWTKAPTLTALACLILLSLGGLPPLTGFMPKWLILQEVTSQGFPLTATVMALTALLSLYFYLRLSYAMTLTLSPYTTNSTAPWRTTTKQPSLPLSAAIISSTSLLPLTPTALALLA
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4048..5092
location: region:4048-5092:1
so has part: feature:4048-5092:1:exon

YP_004021550.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4048-5092:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 34773
product: tRNA-Trp
so part of: sequence
location: 5093..5164
location: region:5093-5164:1
so has part: feature:5093-5164:1:region

position:5093:1
position: 5093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5164:1
position: 5164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5093-5164:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 34773
product: tRNA-Ala
so part of: sequence
location: complement(5166..5234)
location: region:5166-5234:-1
so has part: feature:5166-5234:-1:region

position:5166:-1
position: 5166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5234:-1
position: 5234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5166-5234:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 34773
product: tRNA-Asn
so part of: sequence
location: complement(5235..5308)
location: region:5235-5308:-1
so has part: feature:5235-5308:-1:region

position:5235:-1
position: 5235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5308:-1
position: 5308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5235-5308:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 34773
product: tRNA-Cys
so part of: sequence
location: complement(5340..5405)
location: region:5340-5405:-1
so has part: feature:5340-5405:-1:region

position:5340:-1
position: 5340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5405:-1
position: 5405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5340-5405:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 34773
product: tRNA-Tyr
so part of: sequence
location: complement(5408..5478)
location: region:5408-5478:-1
so has part: feature:5408-5478:-1:region

position:5408:-1
position: 5408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5478:-1
position: 5478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5408-5478:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 34773
gene: COX1
so part of: sequence
location: 5480..7030
location: region:5480-7030:1
so has part: feature:5480-7030:1:exon
subclass of: SO_0000010

9978347
type: Gene
SIO_000068: ncbigene

position:5480:1
position: 5480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7030:1
position: 7030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5480-7030:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 34773
gene: COX1
note: COXI
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQTPLFVWSVLVTAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWDTPLLWALDRAYLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAAFMHWFPLFSGYTLHSTWTKIHFGVMFVGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTVSSIGSLISLVAVIMFLFILWEAFAAKREVSSVELTMTNVEWLHGCPPPYHTFEEPAFVQVQAK
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5480..7030
location: region:5480-7030:1
so has part: feature:5480-7030:1:exon

YP_004021551.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5480-7030:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 34773
product: tRNA-Ser
so part of: sequence
location: complement(7031..7101)
location: region:7031-7101:-1
so has part: feature:7031-7101:-1:region

position:7031:-1
position: 7031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7101:-1
position: 7101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7031-7101:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 34773
product: tRNA-Asp
so part of: sequence
location: 7105..7173
location: region:7105-7173:1
so has part: feature:7105-7173:1:region

position:7105:1
position: 7105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7173:1
position: 7173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7105-7173:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 34773
gene: COX2
so part of: sequence
location: 7186..7876
location: region:7186-7876:1
so has part: feature:7186-7876:1:exon
subclass of: SO_0000010

9978348
type: Gene
SIO_000068: ncbigene

position:7186:1
position: 7186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7876:1
position: 7876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7186-7876:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 34773
gene: COX2
note: COXII; TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7876,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MEHPSRLGLQNAVSPVTAPPLHYTNHTLMIVRRSSTLVLYIIVSMVSTKLTDKYILDSQEIEIVWTVLPAVILILIALPSLRILYLMDEINDPHLTIKAMGHQWYWSYEYTDYEDLGFDSYMVPTQDLVPGQFRLLETDHRMVVPMESPIRVLVSAEDVLHSWAVPALGVKMDAVPGRLNQTAFIASRPGVFYGQCSEICGANHSFMPIVVEAVPLEHFENWSSLMLEDA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7186..7876
location: region:7186-7876:1
so has part: feature:7186-7876:1:exon

YP_004021552.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7186-7876:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 34773
product: tRNA-Lys
so part of: sequence
location: 7877..7950
location: region:7877-7950:1
so has part: feature:7877-7950:1:region

position:7877:1
position: 7877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7950:1
position: 7950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7877-7950:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 34773
gene: ATP8
so part of: sequence
location: 7952..8119
location: region:7952-8119:1
so has part: feature:7952-8119:1:exon
subclass of: SO_0000010

9978349
type: Gene
SIO_000068: ncbigene

position:7952:1
position: 7952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8119:1
position: 8119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7952-8119:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 34773
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPAPWFAILVFSWLIFLTVIPPKVLAHNFNNEPTTVGAEKAKPEPWNWPWY
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7952..8119
location: region:7952-8119:1
so has part: feature:7952-8119:1:exon

YP_004021553.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7952-8119:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 34773
gene: ATP6
so part of: sequence
location: 8110..8793
location: region:8110-8793:1
so has part: feature:8110-8793:1:exon
subclass of: SO_0000010

9978350
type: Gene
SIO_000068: ncbigene

position:8110:1
position: 8110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8793:1
position: 8793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8110-8793:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 34773
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MMLSFFDQFMSPSYLGIPLIAVAIALPWTLYPTPTTRWLNNRVLTLQGWFINRFTQQLLLPINPGGHKWAVLFTSLMLFLITINMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTAALGHLLPEGTPASLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQLIATAAFVLLPIMPTVAILTATILFLLTLLEVAVAMIQAYVFVLLLSLYLHQAV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8110..8793
location: region:8110-8793:1
so has part: feature:8110-8793:1:exon

YP_004021554.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8110-8793:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 34773
gene: COX3
so part of: sequence
location: 8793..9577
location: region:8793-9577:1
so has part: feature:8793-9577:1:exon
subclass of: SO_0000010

9978351
type: Gene
SIO_000068: ncbigene

position:9577:1
position: 9577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8793-9577:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 34773
gene: COX3
note: COXIII; TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9576..9577,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHAYHMVDPSPWPLTGAVGALLLTSGTAIWFRFHSTLLMTLGLVLTLLTMYQWWRDIVREGTFQGHHTPPVQKGLRYGMILFITSEVFFFAGFFWAFYHSSLAPTPELGGCWPPTGVTPLDPFEVPLLNTAVLLASGVTVTWAHHSLMEGGRKQAIQSLTLTILLGFYFTFLQALEYYEAPFTIADGVFGSTFFVATGFHGLHVIIGLTFLAVCLLRQVLHHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8793..9577
location: region:8793-9577:1
so has part: feature:8793-9577:1:exon

YP_004021555.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8793-9577:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 34773
product: tRNA-Gly
so part of: sequence
location: 9578..9649
location: region:9578-9649:1
so has part: feature:9578-9649:1:region

position:9578:1
position: 9578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9649:1
position: 9649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9578-9649:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 34773
gene: ND3
so part of: sequence
location: 9650..9998
location: region:9650-9998:1
so has part: feature:9650-9998:1:exon
subclass of: SO_0000010

9978352
type: Gene
SIO_000068: ncbigene

position:9650:1
position: 9650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9998:1
position: 9998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9650-9998:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 34773
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9998,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MSLIMTILAITSVLSIILIIVSFWLPQMNPDAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGNQLLNPLVTVSWATAILVLLTLGLVYEWMQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9650..9998
location: region:9650-9998:1
so has part: feature:9650-9998:1:exon

YP_004021556.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9650-9998:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 34773
product: tRNA-Arg
so part of: sequence
location: 9999..10068
location: region:9999-10068:1
so has part: feature:9999-10068:1:region

position:9999:1
position: 9999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10068:1
position: 10068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9999-10068:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 34773
gene: ND4L
so part of: sequence
location: 10069..10365
location: region:10069-10365:1
so has part: feature:10069-10365:1:exon
subclass of: SO_0000010

9978353
type: Gene
SIO_000068: ncbigene

position:10069:1
position: 10069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10365:1
position: 10365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10069-10365:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 34773
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTRVHFSFSMAFILGLMGLAFHRTHFLFALLCLEGMMLSLFLALSLWTLQTEATNFSAAPMLLLAFSACEASTGLALLVATARTHGTDRLQNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10069..10365
location: region:10069-10365:1
so has part: feature:10069-10365:1:exon

YP_004021557.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10069-10365:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 34773
gene: ND4
so part of: sequence
location: 10359..11739
location: region:10359-11739:1
so has part: feature:10359-11739:1:exon
subclass of: SO_0000010

9978354
type: Gene
SIO_000068: ncbigene

position:10359:1
position: 10359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11739:1
position: 11739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10359-11739:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 34773
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11739,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKVLIPTLMLFPTIWLTPKKWLWTSAVSYSLIIALLSLTWLNWTAETGWTLPNNYMAIDPLSAPLLVLTCWLLPLMILASQNHTQSEPASRQRMYLSLLASLQAFLIMAFGATEIIMFYIMFEATLVPTLIIITRWGNQAERLNAGTYFLFYTLAGSLPLLVALLTLQNSTGSLSMITLNFCQPLTLISWGDKIWWAGCLVAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMIRMTTVLDPLTKEMAYPFIVLALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGLTGAIILMIAHGLVSSALFCLANTSYERTHSRTMVLARGMQMLFPLTATWWFIANLANLALPPLPNLMGEIMIITTMFNWSPWTLILTGLGTLITAGYSLYMFLMTQRGPVPAHITGLTPYHTREHLLIALHLIPVVLLVLKPEFMWGWFY
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10359..11739
location: region:10359-11739:1
so has part: feature:10359-11739:1:exon

YP_004021558.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10359-11739:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 34773
product: tRNA-His
so part of: sequence
location: 11740..11808
location: region:11740-11808:1
so has part: feature:11740-11808:1:region

position:11740:1
position: 11740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11808:1
position: 11808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11740-11808:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 34773
product: tRNA-Ser
so part of: sequence
location: 11809..11875
location: region:11809-11875:1
so has part: feature:11809-11875:1:region

position:11809:1
position: 11809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11875:1
position: 11875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11809-11875:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 34773
product: tRNA-Leu
so part of: sequence
location: 11876..11947
location: region:11876-11947:1
so has part: feature:11876-11947:1:region

position:11876:1
position: 11876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11947:1
position: 11947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11876-11947:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 34773
gene: ND5
so part of: sequence
location: 11948..13783
location: region:11948-13783:1
so has part: feature:11948-13783:1:exon
subclass of: SO_0000010

9978355
type: Gene
SIO_000068: ncbigene

position:11948:1
position: 11948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13783:1
position: 13783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11948-13783:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 34773
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MQTTLILSSSLTLIFALLAYPIITTIDPAPKPPGWAVSHVKTAVSAAFVVSLLPLFIFLDQGVETIVTTWHWMNTSTFNISISLKFDAYSIIFTPIALYVTWSILEFASWYMHADPYMNRFFKYLLMFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYGRADANTAALQAVIYNRVGDIGLIMSMAWFAMNLNSWEMQQIFALSHNMDMTLPLLGLIIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLHPLTQTNPTALTICLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSVIHSLNDEQDIRKMGGLHNLAPFTSTCLTIGSLALTGTPFLAGFFSKDAIIEALNTSYLNAWALVLTLIATSFTPVYSFRVVFFVTMGTPRFTPLSPINENDPAVINPIKRLAWGSIVAGLILISNTLPTKTPIMTMPPMLKLAALIVTIIGLLTAMELAALTAKQFKPTPTIKLHNFSNMLGFFPATVHRLVPKLNLVLGQTMANQLVDQSWFETAGPKGLVSAQTKMSAATSDTQRGIIKTYLMIFMITTGLATLLAST
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11948..13783
location: region:11948-13783:1
so has part: feature:11948-13783:1:exon

YP_004021559.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11948-13783:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 34773
gene: ND6
so part of: sequence
location: complement(13780..14301)
location: region:13780-14301:-1
so has part: feature:13780-14301:-1:exon
subclass of: SO_0000010

9978356
type: Gene
SIO_000068: ncbigene

position:13780:-1
position: 13780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14301:-1
position: 14301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13780-14301:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 34773
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MVYFVCLWLFGFVLGMVGVASNPAPYFAALGLVMSSGAGCAVLAMFGLPFLALALFLIYLGGMLVVFGYSAALAADPHPESWGDASVFEHAMFYFVVVVAGLLYFGSSWYGFSTGVLSSCKELLMVRGDVGGVSMLYASGGVMMVLCAWVLLLTLFVVLELTRGLSRGTLRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13780..14301)
location: region:13780-14301:-1
so has part: feature:13780-14301:-1:exon

YP_004021560.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13780-14301:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 34773
product: tRNA-Glu
so part of: sequence
location: complement(14302..14370)
location: region:14302-14370:-1
so has part: feature:14302-14370:-1:region

position:14302:-1
position: 14302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14370:-1
position: 14370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14302-14370:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 34773
gene: CYTB
so part of: sequence
location: 14375..15515
location: region:14375-15515:1
so has part: feature:14375-15515:1:exon
subclass of: SO_0000010

9978357
type: Gene
SIO_000068: ncbigene

position:14375:1
position: 14375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15515:1
position: 15515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14375-15515:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 34773
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15515,aa:TERM)
transl table: 2
product: cytochrome b
translation: MASLRKTHPLMKIANDALVDLPAPSNISVWWNFGSLLGMCLAAQILTGLFLAMHYTSDIATAFSSVVHICRDVNYGWLIRSMHANGASFFFICIYAHIGRGLYYGSYVYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGGALVEWIWGGFSVDSATLTRFFAFHFLFPFVIAGATILHLLFLHETGSNNPAGLNSDADKILFHPYFSYKDLLGFAALLLALISLALFSPNLLGDPDNFTPANPMVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVIPILHTSKHRGLTFRPITQFLFWALVLDVVVLTWIGGMPVEHPYVIAGQVASAAYFSLFLILTPLAGWAENKVLEWN
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14375..15515
location: region:14375-15515:1
so has part: feature:14375-15515:1:exon

YP_004021561.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14375-15515:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 34773
product: tRNA-Thr
so part of: sequence
location: 15516..15587
location: region:15516-15587:1
so has part: feature:15516-15587:1:region

position:15516:1
position: 15516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15587:1
position: 15587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15516-15587:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 34773
product: tRNA-Pro
so part of: sequence
location: complement(15587..15656)
location: region:15587-15656:-1
so has part: feature:15587-15656:-1:region

position:15587:-1
position: 15587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15656:-1
position: 15656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15587-15656:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 34773
note: control region
so part of: sequence
location: 15657..16697
location: region:15657-16697:1
so has part: feature:15657-16697:1:region

position:15657:1
position: 15657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15657-16697:1:region