Empedobacter falsenii strain 1681-1 plasmid p1681-tetX, complete sequence.
Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae; Empedobacter.
Emergence of pandrug resistant Empedobacter falsenii in China
Submitted (08-JUN-2019) Department of Applied Biology and Chemical Technology, The Hong Kong Polytechnic University, Hung Hom, Kowloon 000000, Hong Kong
REFSEQ INFORMATION: The reference sequence is identical to\nCP040909.1.\nBacteria and source DNA available from State Key Lab of\nChirosciences, Department of Applied Biology and Chemical\nTechnology, The Hong Kong Polytechnic University, Hung Hom,\nKowloon, Hong Kong.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2019\nAssembly Method :: unicycler v. 0.3.0\nAssembly Name :: 1681-1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 50.0x\nSequencing Technology :: Nanopore MinION; illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/06/2022 13:27:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,514\nCDSs (total) :: 3,405\nGenes (coding) :: 3,384\nCDSs (with protein) :: 3,384\nGenes (RNA) :: 109\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 3\nPseudo Genes (total) :: 21\nCDSs (without protein) :: 21\nPseudo Genes (ambiguous residues) :: 0 of 21\nPseudo Genes (frameshifted) :: 10 of 21\nPseudo Genes (incomplete) :: 8 of 21\nPseudo Genes (internal stop) :: 12 of 21\nPseudo Genes (multiple problems) :: 9 of 21\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_002995486.1
GO:0016740 - transferase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
type B chloramphenicol O-acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013546525.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006849477.1
tetracycline resistance ribosomal protection protein Tet(36)
COORDINATES: similar to AA sequence:RefSeq:WP_004343809.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014386804.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014386803.1
Mph(E)/Mph(G) family macrolide 2'-phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018110123.1
lincosamide nucleotidyltransferase Lnu(H)
COORDINATES: similar to AA sequence:RefSeq:WP_009219358.1
type II toxin-antitoxin system YafQ family toxin
COORDINATES: protein motif:HMM:NF036332.2
COORDINATES: similar to AA sequence:RefSeq:WP_005812759.1
COORDINATES: protein motif:HMM:NF020265.2
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002980225.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_003001633.1
COORDINATES: similar to AA sequence:RefSeq:WP_002993237.1
COORDINATES: similar to AA sequence:RefSeq:WP_002993239.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014615010.1
tetracycline-inactivating monooxygenase Tet(X)