Empedobacter falsenii strain 1681-1 plasmid p1681-tetX, complete sequence.
type: Entry
definition: Empedobacter falsenii strain 1681-1 plasmid p1681-tetX, complete sequence.
sequence version: NZ_CP040909.1
sequence date: 2023-02-07
sequence: sequence
division: CON
label: NZ_CP040909.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN11980259
keyword: RefSeq
source: Empedobacter falsenii
organism: Empedobacter falsenii
taxonomy: Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae; Empedobacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP040909.1.\nBacteria and source DNA available from State Key Lab of\nChirosciences, Department of Applied Biology and Chemical\nTechnology, The Hong Kong Polytechnic University, Hung Hom,\nKowloon, Hong Kong.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2019\nAssembly Method :: unicycler v. 0.3.0\nAssembly Name :: 1681-1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 50.0x\nSequencing Technology :: Nanopore MinION; illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/06/2022 13:27:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,514\nCDSs (total) :: 3,405\nGenes (coding) :: 3,384\nCDSs (with protein) :: 3,384\nGenes (RNA) :: 109\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 3\nPseudo Genes (total) :: 21\nCDSs (without protein) :: 21\nPseudo Genes (ambiguous residues) :: 0 of 21\nPseudo Genes (frameshifted) :: 10 of 21\nPseudo Genes (incomplete) :: 8 of 21\nPseudo Genes (internal stop) :: 12 of 21\nPseudo Genes (multiple problems) :: 9 of 21\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 19650
topology: circular
so has quality: SO_0000988
location: 1..19650
location: region:1-19650:1
RO_0002162: 343874

NZ_CP040909
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN11980259
type: BioSample
SIO_000068: biosample

1
title: Emergence of pandrug resistant Empedobacter falsenii in China
author: Dong, N.
author: Chen, S.
author: Zhang, R.
journal: Unpublished

2
title: Direct Submission
author: Dong, N.
author: Chen, S.
author: Zhang, R.
journal: Submitted (08-JUN-2019) Department of Applied Biology and Chemical Technology, The Hong Kong Polytechnic University, Hung Hom, Kowloon 000000, Hong Kong

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19650:1
position: 19650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19650:1:source
so part of: sequence
organism: Empedobacter falsenii
mol type: genomic DNA
strain: 1681-1
host: Homo sapiens
plasmid: p1681-tetX
country: China
collection date: 2019-04

343874
type: Taxonomy
SIO_000068: taxonomy

FH779_RS17435
type: Gene
subclass of: SO_0000704
RO_0002162: 343874
gene: catB
locus tag: FH779_RS17435
old locus tag: FH779_17425
so part of: sequence
location: 170..799
location: region:170-799:1
so has part: feature:170-799:1:exon
subclass of: SO_0000010

78403273
type: Gene
SIO_000068: ncbigene

position:170:1
position: 170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:799:1
position: 799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:170-799:1:exon

FH779_RS17435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343874
gene: catB
locus tag: FH779_RS17435
old locus tag: FH779_17425
EC number: 2.3.1.28
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002995486.1
GO function: GO:0016740 - transferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type B chloramphenicol O-acetyltransferase
translation: MKNFFESPFKGKIIKDHITNPNIISGKYSYYSGYYHGHSFDDCARYLFPDRNDVDKLIIGSYCSIGSGASFIMAGNQGHKYDWISSFPFFYMSEFDVFSKSQDGFQKAGDTVVGNDVWIGSEAMIMPGVQIGDGAVIGSRALVTKDVEPYSIVGGNPAKLIKKRFSDDDIQKLQEMKWWEWDEETLFEAMPILCSNKIDLLYKFFRKMK
SIO_010081: FH779_RS17435
subclass of: SO_0000673
so part of: FH779_RS17435
location: 170..799
location: region:170-799:1
so has part: feature:170-799:1:exon

WP_014043450.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:170-799:1:exon

FH779_RS17440
type: Gene
subclass of: SO_0000704
RO_0002162: 343874
locus tag: FH779_RS17440
old locus tag: FH779_17430
so part of: sequence
location: complement(1685..2026)
location: region:1685-2026:-1
so has part: feature:1685-2026:-1:exon
subclass of: SO_0000010

78403274
type: Gene
SIO_000068: ncbigene

position:1685:-1
position: 1685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2026:-1
position: 2026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1685-2026:-1:exon

FH779_RS17440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343874
locus tag: FH779_RS17440
old locus tag: FH779_17430
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013546525.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MSERKIPIYLECGYSIAMQVLGGKWKICIIEALRDKPLRPSLIFKEVPDATERVINQQLKELLEYKIIDRKIYAEQPPRTEYFLTDLGRSAFPLSLWRQEIRPQPAQAHSLGR
SIO_010081: FH779_RS17440
subclass of: SO_0000673
so part of: FH779_RS17440
location: complement(1685..2026)
location: region:1685-2026:-1
so has part: feature:1685-2026:-1:exon

WP_150433340.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1685-2026:-1:exon

FH779_RS17445
type: Gene
subclass of: SO_0000704
RO_0002162: 343874
gene: tet(36)
locus tag: FH779_RS17445
old locus tag: FH779_17435
so part of: sequence
location: complement(2107..4026)
location: region:2107-4026:-1
so has part: feature:2107-4026:-1:exon
subclass of: SO_0000010

78403275
type: Gene
SIO_000068: ncbigene

position:2107:-1
position: 2107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4026:-1
position: 4026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2107-4026:-1:exon

FH779_RS17445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343874
gene: tet(36)
locus tag: FH779_RS17445
old locus tag: FH779_17435
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006849477.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tetracycline resistance ribosomal protection protein Tet(36)
translation: MKTINIGILAHIDAGKTSITENLLFASGATEVRGSVDKGNTTTDSMDIEKRRGITVRASTTSIQWNDTKINIIDTPGHMDFLAEVERTFRMLDGAILVVSAKEGIQAQTRLLFNVLQQLEIPAILFINKIDREGVNLNQLYFEIQNSLSKDILLMQSVDGKILTSSCTIHNISEKDRETILEKDDSLLEKYLSDTQLSNSDYWSSMIHLVQFAKLHPIYHGSAMYGIGIEDLLNSITTFIETSLPQENDLSAYVYKIEHNKKEQKRAYLKIIGGSLRTRKSYNLNGSDENLKIRSLKTFYAGNEIDVDEVSTNDIAILDHAESLMVGDYLGTMPSLFDKLNIPSPALKSSIHPAKVEDRSKLISAMNVLSVEDPSLTFGINADNNELEVSLYGATQREVILTLLEERFSVDAYFEEVKTIYKERLKTKSEYTIHIEVPPNPYWASIGLIIEPLPIGAGLTIESDISLGYLNQSFQNAVFDGVKKACESGLYGWKVTDLKVTFSHGIYYSPVSTPADFRSLAPYVFRLALQQADVELLEPILDFKLQIPIAVNARAITDINKMQGEISTITSDGDWTTILGEIPLDTSKEYSAEVSSYTQGLGIFVTRFSGYQITNKKVSRSVELNEKDKLMYMFEKELG
SIO_010081: FH779_RS17445
subclass of: SO_0000673
so part of: FH779_RS17445
location: complement(2107..4026)
location: region:2107-4026:-1
so has part: feature:2107-4026:-1:exon

WP_150433341.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2107-4026:-1:exon

FH779_RS17450
type: Gene
subclass of: SO_0000704
RO_0002162: 343874
locus tag: FH779_RS17450
old locus tag: FH779_17440
so part of: sequence
location: complement(4301..5272)
location: region:4301-5272:-1
so has part: feature:4301-5272:-1:exon
subclass of: SO_0000010

78403276
type: Gene
SIO_000068: ncbigene

position:4301:-1
position: 4301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5272:-1
position: 5272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4301-5272:-1:exon

FH779_RS17450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343874
locus tag: FH779_RS17450
old locus tag: FH779_17440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004343809.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS30 family transposase
translation: MSHLTREQRYTICTMLQSGYPQCEIARVINKDKSVVSREIRRNADARSGEYKDDLAHRKYLKRQAYKAKARTFTPEVEAYVRDKLRLKYSPEQIAGVAKTNGDNCVSHERIYQFIWQDKRKKGTLYLDLRNRGRRYKKRSVIYDKRGTIPNRTDISLRPPEVELRERFGDLEIDLIIGKDHKGAILTINDRATGIARLRKLDGKDAEQLALVTIDCLEDWKPFLKTITSDNGKEFSCHQMVAGDLKIDFFFAKPYASWQRGSNENYNRLVRQYIPKKVDFNYVTHEYVNYVEQQINNRPRKRFGYLSPNQIFDGIWNLLEKSG
SIO_010081: FH779_RS17450
subclass of: SO_0000673
so part of: FH779_RS17450
location: complement(4301..5272)
location: region:4301-5272:-1
so has part: feature:4301-5272:-1:exon

WP_180906896.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4301-5272:-1:exon

FH779_RS17455
type: Gene
subclass of: SO_0000704
RO_0002162: 343874
locus tag: FH779_RS17455
old locus tag: FH779_17445
so part of: sequence
location: complement(5367..5915)
location: region:5367-5915:-1
so has part: feature:5367-5915:-1:exon
subclass of: SO_0000010

78403277
type: Gene
SIO_000068: ncbigene

position:5367:-1
position: 5367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5915:-1
position: 5915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5367-5915:-1:exon

FH779_RS17455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343874
locus tag: FH779_RS17455
old locus tag: FH779_17445
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLKFLSSIKIKHSQEENIVYKLFVGFLTYAVIYYFFLKPLTIGQSFKYNLFVEWIPFIIGIVIITLLRLNFLKRLHKGFKSIIDRVFTYVLLIIMASMISYSSFGITAEAIFHIVGYNVAKNSNQIVMTLPIESVYSYRGRYKVFFYFNNNYEYFRIGNKLFRKIKEIDMKIQVVNATLQTK
SIO_010081: FH779_RS17455
subclass of: SO_0000673
so part of: FH779_RS17455
location: complement(5367..5915)
location: region:5367-5915:-1
so has part: feature:5367-5915:-1:exon

WP_180906897.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5367-5915:-1:exon

FH779_RS17460
type: Gene
subclass of: SO_0000704
RO_0002162: 343874
gene: mef(C)
locus tag: FH779_RS17460
old locus tag: FH779_17450
so part of: sequence
location: 6599..7822
location: region:6599-7822:1
so has part: feature:6599-7822:1:exon
subclass of: SO_0000010

78403278
type: Gene
SIO_000068: ncbigene

position:6599:1
position: 6599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7822:1
position: 7822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6599-7822:1:exon

FH779_RS17460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343874
gene: mef(C)
locus tag: FH779_RS17460
old locus tag: FH779_17450
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014386804.1
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: macrolide efflux MFS transporter Mef(C)
translation: MENRKWFKTYMFIWAGQFASMLTSYAVQFAIVIWLSLEYKSAEVLAYAGIAAMLPQALIGLIAGVYVDRLNRKYVMIFSDAFIALCALLLLVILQNENVNLIWIYILLGLRSVGNAFHAPALQAIAPLIVPQNELIKVAGINQVLHSVCSIGGPAIGTLAIAYLPISKVLYLDLIGALLAILSLVMVKIPNVVAKSKSSAHSIATEFSEGFQTVSKNKGLRYLFLYAMAITFVIMPAAIMFPLLTTGHFAGGKWEIGIVEVVWGGGMLIGGVILSIFKLKGSKVVAVNVMYVLLGLTFILSGVLPASWFVGFVMVTAIGGISLSVFNGCFTAIVQTEVSPEKLGRVFSLYYSLAVLPSVIGLLFTGLIAEVIGVNITFIISGCLAILVGILSFSTRNLMQLGKIKNI
SIO_010081: FH779_RS17460
subclass of: SO_0000673
so part of: FH779_RS17460
location: 6599..7822
location: region:6599-7822:1
so has part: feature:6599-7822:1:exon

WP_085286200.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6599-7822:1:exon

FH779_RS17465
type: Gene
subclass of: SO_0000704
RO_0002162: 343874
gene: mph
locus tag: FH779_RS17465
old locus tag: FH779_17455
so part of: sequence
location: 7827..8711
location: region:7827-8711:1
so has part: feature:7827-8711:1:exon
subclass of: SO_0000010

78403279
type: Gene
SIO_000068: ncbigene

position:7827:1
position: 7827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8711:1
position: 8711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7827-8711:1:exon

FH779_RS17465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343874
gene: mph
locus tag: FH779_RS17465
old locus tag: FH779_17455
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014386803.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Mph(E)/Mph(G) family macrolide 2'-phosphotransferase
translation: MKNRDIQKLAERNGLILSDEMSFNEMGIDFKVGFATDRDGTKWLLRIPRRTTLGEQIANEKRILQLVSKYLSVQVPDWRIANEKLVAYPLLDGKPALTYDAETYEVTWNMSKENDLYIPSLAKALIELHSIPTEEVLRNNLKVLTPEQVRNEISERLILVKSELGINAELELRYQKWLDNDALWPNFTKFIHGDLYAGHTLTHHNGEVCGIIDWSTAQVSDIAQDFSGHVTVFGEESLKNLISAYEKQGGEVWDKLFEQAVERAAAAPLAYGYFALETQDEIHLSSAKLQLGVE
SIO_010081: FH779_RS17465
subclass of: SO_0000673
so part of: FH779_RS17465
location: 7827..8711
location: region:7827-8711:1
so has part: feature:7827-8711:1:exon

WP_078213155.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7827-8711:1:exon

FH779_RS17470
type: Gene
subclass of: SO_0000704
RO_0002162: 343874
gene: lnu(H)
locus tag: FH779_RS17470
old locus tag: FH779_17460
so part of: sequence
location: complement(8929..9711)
location: region:8929-9711:-1
so has part: feature:8929-9711:-1:exon
subclass of: SO_0000010

78403280
type: Gene
SIO_000068: ncbigene

position:8929:-1
position: 8929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9711:-1
position: 9711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8929-9711:-1:exon

FH779_RS17470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343874
gene: lnu(H)
locus tag: FH779_RS17470
old locus tag: FH779_17460
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018110123.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lincosamide nucleotidyltransferase Lnu(H)
translation: MTQLQMINKTKSIAQQDENVSAVFMYGSFTKSEGDKYSDIEFYIFLKNKENFSSEKWVNQIHPVALYFTNEYGSEVAIFENMVRGEFHFLKTEEIEIIKSWDGIVAFSDFDQMNLIDKDGHLTKTLNQIKTKSPERITNENILWLSQSLLNVILTTSNLIKREEFAHAHHSLSNVQKYLLWLIRARTNKTQHWESPTKSLEKDIDTTWYFAYKTVTSDLNPKNIILAFENSLNLSEKLFDELNIEPKMKEILHEIRKNYR
SIO_010081: FH779_RS17470
subclass of: SO_0000673
so part of: FH779_RS17470
location: complement(8929..9711)
location: region:8929-9711:-1
so has part: feature:8929-9711:-1:exon

WP_051021433.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8929-9711:-1:exon

FH779_RS17475
type: Gene
subclass of: SO_0000704
RO_0002162: 343874
locus tag: FH779_RS17475
old locus tag: FH779_17465
so part of: sequence
location: complement(10259..10543)
location: region:10259-10543:-1
so has part: feature:10259-10543:-1:exon
subclass of: SO_0000010

78403281
type: Gene
SIO_000068: ncbigene

position:10259:-1
position: 10259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10543:-1
position: 10543
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10259-10543:-1:exon

FH779_RS17475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343874
locus tag: FH779_RS17475
old locus tag: FH779_17465
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009219358.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MFKIVASNKFIKDLKLLKKRSNSDFEILQSFLNNLAEQGNKGISKKHKPHKLKGEYKGYWECHVKPDLLLIWNEDSEIMLLELVRTGTHSDLFK
SIO_010081: FH779_RS17475
subclass of: SO_0000673
so part of: FH779_RS17475
location: complement(10259..10543)
location: region:10259-10543:-1
so has part: feature:10259-10543:-1:exon

WP_180906884.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10259-10543:-1:exon

FH779_RS17480
type: Gene
subclass of: SO_0000704
RO_0002162: 343874
locus tag: FH779_RS17480
old locus tag: FH779_17470
so part of: sequence
location: complement(10547..10786)
location: region:10547-10786:-1
so has part: feature:10547-10786:-1:exon
subclass of: SO_0000010

78403282
type: Gene
SIO_000068: ncbigene

position:10547:-1
position: 10547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10786:-1
position: 10786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10547-10786:-1:exon

FH779_RS17480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343874
locus tag: FH779_RS17480
old locus tag: FH779_17470
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNTKESKRATSLRLNRDLYLKIEKRAKKENRSISNLLETIISQALNHNEPNEDTIEAMNELKKGNGIKFNSVDELFKSI
SIO_010081: FH779_RS17480
subclass of: SO_0000673
so part of: FH779_RS17480
location: complement(10547..10786)
location: region:10547-10786:-1
so has part: feature:10547-10786:-1:exon

WP_180906885.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10547-10786:-1:exon

FH779_RS17485
type: Gene
subclass of: SO_0000704
RO_0002162: 343874
locus tag: FH779_RS17485
old locus tag: FH779_17475
so part of: sequence
location: complement(10810..11022)
location: region:10810-11022:-1
so has part: feature:10810-11022:-1:exon
subclass of: SO_0000010

78403283
type: Gene
SIO_000068: ncbigene

position:10810:-1
position: 10810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11022:-1
position: 11022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10810-11022:-1:exon

FH779_RS17485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343874
locus tag: FH779_RS17485
old locus tag: FH779_17475
inference: COORDINATES: protein motif:HMM:NF036332.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKRKLIDLDLETERRLSILASSNGMSLKKYIEYILFNHGNEHSITIEKEVKKKKDAVKNQLSIIDELKKH
SIO_010081: FH779_RS17485
subclass of: SO_0000673
so part of: FH779_RS17485
location: complement(10810..11022)
location: region:10810-11022:-1
so has part: feature:10810-11022:-1:exon

WP_180906886.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10810-11022:-1:exon

FH779_RS17490
type: Gene
subclass of: SO_0000704
RO_0002162: 343874
locus tag: FH779_RS17490
old locus tag: FH779_17480
so part of: sequence
location: complement(11022..11483)
location: region:11022-11483:-1
so has part: feature:11022-11483:-1:exon
subclass of: SO_0000010

78403284
type: Gene
SIO_000068: ncbigene

position:11483:-1
position: 11483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11022-11483:-1:exon

FH779_RS17490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343874
locus tag: FH779_RS17490
old locus tag: FH779_17480
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNQKYTSDDLSKALNISKRTAQRYIDKIFDKSNKEVSFEEDVFNILIQRHNNDNLTTDNDNGITEYFTEDEYIEFQKRLTEYPLLKKQLEDSKENLTTLLNELEYHKSAYTKQLILHEKLIESISEKAINERIMLDTIKQRNFIEAKEKGLDQ
SIO_010081: FH779_RS17490
subclass of: SO_0000673
so part of: FH779_RS17490
location: complement(11022..11483)
location: region:11022-11483:-1
so has part: feature:11022-11483:-1:exon

WP_180906887.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11022-11483:-1:exon

FH779_RS17495
type: Gene
subclass of: SO_0000704
RO_0002162: 343874
locus tag: FH779_RS17495
old locus tag: FH779_17485
so part of: sequence
location: complement(11622..12626)
location: region:11622-12626:-1
so has part: feature:11622-12626:-1:exon
subclass of: SO_0000010

78403285
type: Gene
SIO_000068: ncbigene

position:11622:-1
position: 11622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12626:-1
position: 12626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11622-12626:-1:exon

FH779_RS17495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343874
locus tag: FH779_RS17495
old locus tag: FH779_17485
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005812759.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MNIKNKEVLQSYILTTAKYDYSVYEKRILYRIIELNQNLIESKKLNQNYSIEKDIYDDVKYTLPISSFLNGEEDKNHTRVKNALKSLQRKVISYEDENEYKSDGIIFKVRINKYSQSVSFFITDWIYQTLMDFSKGYRKYELATAMKFESVYSMRFYELFSNQKTPINYSIETLKEIFGLENKYKLTTNFINKVIIPAKKELDKCSPYTFHYDLIKTGRKITSIRFIPVHQPQFEDESIKKQKVLKQMSNRWFIPKNIEDYLKYNYEFTDKELSNNLNLFETLYNNLSEEELLDFLVDLKEQSILYEIKNLKAYLIGSLKNKIDQILDKKYSNK
SIO_010081: FH779_RS17495
subclass of: SO_0000673
so part of: FH779_RS17495
location: complement(11622..12626)
location: region:11622-12626:-1
so has part: feature:11622-12626:-1:exon

WP_180906888.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11622-12626:-1:exon

FH779_RS17500
type: Gene
subclass of: SO_0000704
RO_0002162: 343874
locus tag: FH779_RS17500
old locus tag: FH779_17490
so part of: sequence
location: 13525..13845
location: region:13525-13845:1
so has part: feature:13525-13845:1:exon
subclass of: SO_0000010

78403286
type: Gene
SIO_000068: ncbigene

position:13525:1
position: 13525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13845:1
position: 13845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13525-13845:1:exon

FH779_RS17500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343874
locus tag: FH779_RS17500
old locus tag: FH779_17490
inference: COORDINATES: protein motif:HMM:NF020265.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1778 domain-containing protein
translation: MKEYFEKKTEKIQLRLTSFEKKILKIKAEDSGLTLSEFVLSSALNRQIKPPMTSEELDSYKTLKQYQTNFARISNLIKGKEKGLNEEIEQTIKLINQHLKTIVNGK
SIO_010081: FH779_RS17500
subclass of: SO_0000673
so part of: FH779_RS17500
location: 13525..13845
location: region:13525-13845:1
so has part: feature:13525-13845:1:exon

WP_180906889.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13525-13845:1:exon

FH779_RS17505
type: Gene
subclass of: SO_0000704
RO_0002162: 343874
locus tag: FH779_RS17505
old locus tag: FH779_17495
so part of: sequence
location: 13835..14677
location: region:13835-14677:1
so has part: feature:13835-14677:1:exon
subclass of: SO_0000010

78403287
type: Gene
SIO_000068: ncbigene

position:13835:1
position: 13835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14677:1
position: 14677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13835-14677:1:exon

FH779_RS17505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343874
locus tag: FH779_RS17505
old locus tag: FH779_17495
inference: COORDINATES: protein motif:HMM:NF015397.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MVSKGSATKGSAQAIDYIMNDKEKGQAVELDRNLISGNNGNEIIAEFREIQQFNHNCSNNTYSIVLSPSEEKKHWSNEELKDFGQAHLKNLGLENNQYLMTAHRSTKHPHIHIICNRIDLDGNAHSDQFISKKCQESAEKIAQEKGLITAKEMAQLKQIELKPLKKEIHQAHEFAKEKSNNFNEYKDYMYSKGIEVQPTVNKNGEMQGYRLKHRESELNFKASEIHKNVGLKDLIENRVTIDSKLSKPLENIRQNLPTEKILEEVQELKITKSRSRGLSL
SIO_010081: FH779_RS17505
subclass of: SO_0000673
so part of: FH779_RS17505
location: 13835..14677
location: region:13835-14677:1
so has part: feature:13835-14677:1:exon

WP_180906890.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13835-14677:1:exon

FH779_RS17510
type: Gene
subclass of: SO_0000704
RO_0002162: 343874
locus tag: FH779_RS17510
old locus tag: FH779_17500
so part of: sequence
location: 14680..15264
location: region:14680-15264:1
so has part: feature:14680-15264:1:exon
subclass of: SO_0000010

78403288
type: Gene
SIO_000068: ncbigene

position:14680:1
position: 14680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15264:1
position: 15264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14680-15264:1:exon

FH779_RS17510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343874
locus tag: FH779_RS17510
old locus tag: FH779_17500
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVTRKQIGTEQLAKVLEFTLEELRKDLAVNKTTTEQIQRRFLERLEENYNRELKINLDPFITANNSFNSNLKSTIENEQAFLSRFKDDLFKNIQEYIKTSERQAEELKTVKKDINFTYIGLGLILLAVVFFYFTYSIGFKNKSDIREEYKKELIQNGQYNTQENAIFLEKFNKWIKKNPKDFEKLSNEIDKTTD
SIO_010081: FH779_RS17510
subclass of: SO_0000673
so part of: FH779_RS17510
location: 14680..15264
location: region:14680-15264:1
so has part: feature:14680-15264:1:exon

WP_180906891.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14680-15264:1:exon

FH779_RS17515
type: Gene
subclass of: SO_0000704
RO_0002162: 343874
locus tag: FH779_RS17515
old locus tag: FH779_17505
so part of: sequence
location: 15481..15810
location: region:15481-15810:1
so has part: feature:15481-15810:1:exon
subclass of: SO_0000010

78403289
type: Gene
SIO_000068: ncbigene

position:15481:1
position: 15481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15810:1
position: 15810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15481-15810:1:exon

FH779_RS17515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343874
locus tag: FH779_RS17515
old locus tag: FH779_17505
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002980225.1
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metalloregulator ArsR/SmtB family transcription factor
translation: MGITKTEFFTDEQNKLSILFKVLGHPARIAIIQHIINQKACICNDLVDELGLAQATISQHLKELKSIGIIQGNIEGKSVCYCIDENIWNEIKNKLISFFNQNVNINQCC
SIO_010081: FH779_RS17515
subclass of: SO_0000673
so part of: FH779_RS17515
location: 15481..15810
location: region:15481-15810:1
so has part: feature:15481-15810:1:exon

WP_180906892.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15481-15810:1:exon

FH779_RS17520
type: Gene
subclass of: SO_0000704
RO_0002162: 343874
locus tag: FH779_RS17520
old locus tag: FH779_17510
so part of: sequence
location: 15882..16346
location: region:15882-16346:1
so has part: feature:15882-16346:1:exon
subclass of: SO_0000010

78403290
type: Gene
SIO_000068: ncbigene

position:15882:1
position: 15882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16346:1
position: 16346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15882-16346:1:exon

FH779_RS17520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343874
locus tag: FH779_RS17520
old locus tag: FH779_17510
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003001633.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6428 family protein
translation: MKLSEIKEILPKLENVEFQLEDGTFVPEHFHVTEVGQIIKNFIDCGGTIRNEKVVNFQLWNADDYEHRLKPNKLLHIIELSENKLGIENGEIEVEYQAGTIGKYDLEFNGKNFVLKNKLTACLAEDACGIPLATDNKFRVKEDNSSCTPNSGCC
SIO_010081: FH779_RS17520
subclass of: SO_0000673
so part of: FH779_RS17520
location: 15882..16346
location: region:15882-16346:1
so has part: feature:15882-16346:1:exon

WP_180906893.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15882-16346:1:exon

FH779_RS17525
type: Gene
subclass of: SO_0000704
RO_0002162: 343874
locus tag: FH779_RS17525
old locus tag: FH779_17515
so part of: sequence
location: 16366..16980
location: region:16366-16980:1
so has part: feature:16366-16980:1:exon
subclass of: SO_0000010

78403291
type: Gene
SIO_000068: ncbigene

position:16366:1
position: 16366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16980:1
position: 16980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16366-16980:1:exon

FH779_RS17525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343874
locus tag: FH779_RS17525
old locus tag: FH779_17515
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002993237.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protein-tyrosine-phosphatase
translation: MYLKLFKEISIIQNIDIISIERKAVLQPFIDYIQQKVDCKQTVNINFICTHNSRRSHLSQVWAQVAAAYFNIPNVQCYSGGTEVTALFPKVAETLMSQGLNIQIIADNSNPIYAIKYDENTQSIIGFSKKYDDIFNPTSQFVAVLTCSQADGGCPFIPGAEKRIPITFEDPKISDGTAQQMEVYKQKSIEIASEMLYVFSQIKN
SIO_010081: FH779_RS17525
subclass of: SO_0000673
so part of: FH779_RS17525
location: 16366..16980
location: region:16366-16980:1
so has part: feature:16366-16980:1:exon

WP_180906894.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16366-16980:1:exon

FH779_RS17530
type: Gene
subclass of: SO_0000704
RO_0002162: 343874
gene: arsB
locus tag: FH779_RS17530
old locus tag: FH779_17520
so part of: sequence
location: 16984..18012
location: region:16984-18012:1
so has part: feature:16984-18012:1:exon
subclass of: SO_0000010

78403292
type: Gene
SIO_000068: ncbigene

position:16984:1
position: 16984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18012:1
position: 18012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16984-18012:1:exon

FH779_RS17530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343874
gene: arsB
locus tag: FH779_RS17530
old locus tag: FH779_17520
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002993239.1
GO function: GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ACR3 family arsenite efflux transporter
translation: MQPKLKFLDRNLTLWIFLAMALGVFIGYIFPNVSQVTDSLSVGTTNIPLAIGLILMMFPPLAKVDYSLLPQAFKDKKIIGISLILNWFIGTLLMFGLAVLFLHDEPHYMTGLILIGLARCIAMVIVWSDLAKANREYTAMLVALNSIFQVFSYSFLVWLFINVLPSKLGLANFNVSVSMGEVTQSVLIYLGIPFLAGFITRYTLVKAKGIEWYNHKFVPKISPITLYALLFTIVVMFSLKGDKILELPMDVVKVAIPLIIYFVLMFFVSFFVNKSLKVPYDKNASISFTATGNNFELAIAVSIAVFGIHSPQAFVGVIGPLVEVPVLILLVKASLWLKKKYY
SIO_010081: FH779_RS17530
subclass of: SO_0000673
so part of: FH779_RS17530
location: 16984..18012
location: region:16984-18012:1
so has part: feature:16984-18012:1:exon

WP_180906895.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16984-18012:1:exon

FH779_RS17535
type: Gene
subclass of: SO_0000704
RO_0002162: 343874
gene: tet(X)
locus tag: FH779_RS17535
old locus tag: FH779_17525
so part of: sequence
location: complement(18310..19446)
location: region:18310-19446:-1
so has part: feature:18310-19446:-1:exon
subclass of: SO_0000010

78403293
type: Gene
SIO_000068: ncbigene

position:18310:-1
position: 18310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19446:-1
position: 19446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18310-19446:-1:exon

FH779_RS17535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343874
gene: tet(X)
locus tag: FH779_RS17535
old locus tag: FH779_17525
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014615010.1
GO function: GO:0071949 - FAD binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tetracycline-inactivating monooxygenase Tet(X)
translation: MNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRKFVTDTEVEETGTFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWKNQTQVDFQNRNSVVDFLLKEFSDWDERYKELIHTTLSFVGLATRIFPLEKPWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIYGKEAQEESTQNEIEMFKPDFTFQQLLNV
SIO_010081: FH779_RS17535
subclass of: SO_0000673
so part of: FH779_RS17535
location: complement(18310..19446)
location: region:18310-19446:-1
so has part: feature:18310-19446:-1:exon

WP_005790843.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18310-19446:-1:exon