Sodalis glossinidius str. 'morsitans' plasmid pSG3, complete sequence.
type: Entry
definition: Sodalis glossinidius str. 'morsitans' plasmid pSG3, complete sequence.
sequence version: NC_007715.1
sequence date: 2023-04-17
sequence: sequence
division: CON
label: NC_007715.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00061079
keyword: RefSeq
source: Sodalis glossinidius str. 'morsitans'
organism: Sodalis glossinidius str. 'morsitans'
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Bruguierivoracaceae; Sodalis.
reference: 1
references: 16365377
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP008235.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/17/2023 01:23:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,017\nCDSs (total) :: 4,918\nGenes (coding) :: 3,718\nCDSs (with protein) :: 3,718\nGenes (RNA) :: 99\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 71\nncRNAs :: 6\nPseudo Genes (total) :: 1,200\nCDSs (without protein) :: 1,200\nPseudo Genes (ambiguous residues) :: 0 of 1,200\nPseudo Genes (frameshifted) :: 890 of 1,200\nPseudo Genes (incomplete) :: 445 of 1,200\nPseudo Genes (internal stop) :: 423 of 1,200\nPseudo Genes (multiple problems) :: 498 of 1,200\nPseudo Genes (short protein) :: 1 of 1,200\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 10810
topology: circular
so has quality: SO_0000988
location: 1..10810
location: region:1-10810:1
RO_0002162: 343509

NC_007715
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00061079
type: BioSample
SIO_000068: biosample

1
title: Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host
author: Toh, H.
author: Weiss, B.L.
author: Perkin, S.A.
author: Yamashita, A.
author: Oshima, K.
author: Hattori, M.
author: Aksoy, S.
journal: Genome Res
volume: 16
issue: 2
pages: 149-156
year: 2006
pubmed: 16365377

16365377
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Hattori, M.
author: Yamashita, A.
author: Toh, H.
author: Oshima, K.
author: Shiba, T.
journal: Submitted (14-DEC-2004) Contact:Masahira Hattori Graduate School of Frontier Sciences, University of Tokyo; 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8561, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10810:1
position: 10810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-10810:1:source
so part of: sequence
organism: Sodalis glossinidius str. 'morsitans'
mol type: genomic DNA
strain: morsitans
isolation source: isolated from secondary symbiont of Glossina morsitans morsitans
host: Glossina morsitans morsitans
plasmid: pSG3

343509
type: Taxonomy
SIO_000068: taxonomy

SGP1_RS31780
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS31780
so part of: sequence
location: join(9659..10810,1..570)
location: region:1-10810:1
so has part: feature:9659-10810:1:exon
so has part: feature:1-570:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:9659-10810:1:exon

position:9659:1
position: 9659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-570:1:exon

position:570:1
position: 570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SGP1_RS31780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS31780
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: M12 family metallo-peptidase
translation: MQKKSITITPNELKNGKLPSGYDEVIFKLSDGNWTKNITLPLQPDNNNRVIIRSSAKFTAVLDVKPVDVPPNTLDITTGCEYKFVYSQALEMWVISGDKVNYSTPNNDGPVIPEKPAFFVFYTIADADWVPEIFLPAKADNGSYIIVRSRATYSSKVSTKNMLFASTTQIKKNDEYIFKFLSNFGGWVIDSAPVRTLRADSIDLQIPSPTSQHTQVKFSNGNWIETIKLPAVAGDRDKVSLTSSANYTTTIDSSNVNMPGMMKLHTGEHYDFFYIAENKQWQLMKYPDSIYYAKDIQNGNIMPLIRPRTIIKVDDDNWQPVLKLPLGQQYGSRVIFQSSATYPFQVLYDDKNYSVTQGEIVVFKVDEDTFWQKETITLNLLIVYSDKAADKLGEHVIRNRLIEAFNLTNEALENSGANFRFRLVGLKQIIAKKNWKTLSNVISELRDDPTVQGWRRDLKACGVYYEGTEDGCGMAYVKADSRSMIASGSINCGTTVMRHELGHNMGLQHAGESKSYNQGYGKINTIMGGNGIPYYSTPQRYTPDYGIRMGIHDKIDAVRAMNKFSSTVAGYPK
SIO_010081: SGP1_RS31780
subclass of: SO_0000673
so part of: SGP1_RS31780
location: join(9659..10810,1..570)
location: region:1-10810:1
so has part: feature:9659-10810:1:exon
so has part: feature:1-570:1:exon

WP_041867758.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9659-10810:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-570:1:exon

SGP1_RS22705
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22705
old locus tag: SGP3_0001
so part of: sequence
location: 1155..1700
location: region:1155-1700:1
so has part: feature:1155-1700:1:exon
subclass of: SO_0000010

position:1155:1
position: 1155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1700:1
position: 1700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1155-1700:1:exon

SGP1_RS22705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22705
old locus tag: SGP3_0001
function: conserved hypothetical protein
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015981295.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1640 domain-containing protein
translation: MGQVAFDTQEFVEMLENAGLPKDQARAISIAVRKSHEVADVATRRDLEDARKDLSAKIVEARKDTVAQFEKTDAKFAEVKRDIAEVRKDLAFEIADARKEAAARADRTNAEITGVRKDMAALFEKNEAQIALLRREQSADIALVRKDMEALTNGLLIKLTKVMLGCVGLASAIVTIAVKFF
SIO_010081: SGP1_RS22705
subclass of: SO_0000673
so part of: SGP1_RS22705
location: 1155..1700
location: region:1155-1700:1
so has part: feature:1155-1700:1:exon

WP_011279276.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1155-1700:1:exon

SGP1_RS22715
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22715
pseudo: true
so part of: sequence
location: <2296..2781
location: region:2296-2781:1
so has part: feature:2296-2781:1:exon
subclass of: SO_0000010

position:2296:1
position: 2296
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:2781:1
position: 2781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2296-2781:1:exon

SGP1_RS22715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22715
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016257341.1
note: internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: PBSX family phage terminase large subunit
SIO_010081: SGP1_RS22715
subclass of: SO_0000673
so part of: SGP1_RS22715
location: <2296..2781
location: region:2296-2781:1
so has part: feature:2296-2781:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2296-2781:1:exon

SGP1_RS22720
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22720
so part of: sequence
location: 3007..3291
location: region:3007-3291:1
so has part: feature:3007-3291:1:exon
subclass of: SO_0000010

position:3007:1
position: 3007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3291:1
position: 3291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3007-3291:1:exon

SGP1_RS22720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22720
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKYPRRRLMDGLQSMLTSLGERVSAINYTGTHGDIADRELLAMYKHSWMVKKFIDKTADDKDRLLPRNRVLADNEGFVLLQETGRGKTGKPRT
SIO_010081: SGP1_RS22720
subclass of: SO_0000673
so part of: SGP1_RS22720
location: 3007..3291
location: region:3007-3291:1
so has part: feature:3007-3291:1:exon

WP_041867759.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3007-3291:1:exon

SGP1_RS34805
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34805
pseudo: true
so part of: sequence
location: 3731..>3949
location: region:3731-3949:1
so has part: feature:3731-3949:1:exon
subclass of: SO_0000010

position:3731:1
position: 3731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3949:1
position: 3949
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3731-3949:1:exon

SGP1_RS34805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34805
inference: COORDINATES: protein motif:HMM:NF022494.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: SGP1_RS34805
subclass of: SO_0000673
so part of: SGP1_RS34805
location: 3731..>3949
location: region:3731-3949:1
so has part: feature:3731-3949:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3731-3949:1:exon

SGP1_RS31270
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS31270
so part of: sequence
location: complement(4111..4599)
location: region:4111-4599:-1
so has part: feature:4111-4599:-1:exon
subclass of: SO_0000010

position:4111:-1
position: 4111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4599:-1
position: 4599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4111-4599:-1:exon

SGP1_RS31270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS31270
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLWGLDNGLNHSADGYSSTQIQLVHRGSIAALYWYRNALRKSEDSPALVLGTALHAAILEPERFATEYACAPSVNLRTNEGKERLVAFEADCAEHGMTPLKQEDFDTVCLIRDSALASLLSLFWRMENGLLLKVCPDWLGEFAGSPPLATLCQSDHHCRRHR
SIO_010081: SGP1_RS31270
subclass of: SO_0000673
so part of: SGP1_RS31270
location: complement(4111..4599)
location: region:4111-4599:-1
so has part: feature:4111-4599:-1:exon

WP_162010793.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4111-4599:-1:exon

SGP1_RS22735
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22735
so part of: sequence
location: complement(4973..5341)
location: region:4973-5341:-1
so has part: feature:4973-5341:-1:exon
subclass of: SO_0000010

position:4973:-1
position: 4973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5341:-1
position: 5341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4973-5341:-1:exon

SGP1_RS22735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22735
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDNPEENALEITEIIEAVEIDESVNYSPNCDDRSSESDETKARDWPDLELDVARALWEGELHWEAIPSEVDQWARKMVKCRDREMMRWFLALRMLPVSLSRNLWARGHGLKNQRMNAGIVLR
SIO_010081: SGP1_RS22735
subclass of: SO_0000673
so part of: SGP1_RS22735
location: complement(4973..5341)
location: region:4973-5341:-1
so has part: feature:4973-5341:-1:exon

WP_041867761.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4973-5341:-1:exon

SGP1_RS22740
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22740
so part of: sequence
location: complement(5377..5790)
location: region:5377-5790:-1
so has part: feature:5377-5790:-1:exon
subclass of: SO_0000010

position:5377:-1
position: 5377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5790:-1
position: 5790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5377-5790:-1:exon

SGP1_RS22740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22740
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKVSRFIFEQDGEYGSFYKATRFEEITQELYISKTEKQIDHVNEFAIKQYCALLSLFGEEESYSEDELRDAQAILDNPEGEEAEDVARYDALLQKVTTHRVTMEKDATLVDINPPRCACIEVRKLVVRLYINTTISP
SIO_010081: SGP1_RS22740
subclass of: SO_0000673
so part of: SGP1_RS22740
location: complement(5377..5790)
location: region:5377-5790:-1
so has part: feature:5377-5790:-1:exon

WP_041867762.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5377-5790:-1:exon

SGP1_RS34810
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34810
old locus tag: SGP3_0003
so part of: sequence
location: complement(5861..6094)
location: region:5861-6094:-1
so has part: feature:5861-6094:-1:exon
subclass of: SO_0000010

position:5861:-1
position: 5861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6094:-1
position: 6094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5861-6094:-1:exon

SGP1_RS34810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34810
old locus tag: SGP3_0003
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MCRIKTRPTTSLATNSHEILNLRRLVKFYRSVQVENPPSEEREWEDATSVLVAAAFLVVDSIDIDSTECNEKSGGAA
SIO_010081: SGP1_RS34810
subclass of: SO_0000673
so part of: SGP1_RS34810
location: complement(5861..6094)
location: region:5861-6094:-1
so has part: feature:5861-6094:-1:exon

WP_242451026.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5861-6094:-1:exon

SGP1_RS34815
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34815
so part of: sequence
location: complement(6169..6435)
location: region:6169-6435:-1
so has part: feature:6169-6435:-1:exon
subclass of: SO_0000010

position:6169:-1
position: 6169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6435:-1
position: 6435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6169-6435:-1:exon

SGP1_RS34815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34815
function: putative response regulator
inference: COORDINATES: protein motif:HMM:NF012422.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MHRHHLPCAPVQVRSTLECVDGEAPRSATFEADTRFTEKERKIIFFALQGLTAKDIGRRMDISYRTVEKRRQVIFDKTGAHSTRDLTM
SIO_010081: SGP1_RS34815
subclass of: SO_0000673
so part of: SGP1_RS34815
location: complement(6169..6435)
location: region:6169-6435:-1
so has part: feature:6169-6435:-1:exon

WP_011279279.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6169-6435:-1:exon

SGP1_RS34820
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34820
so part of: sequence
location: complement(6576..6722)
location: region:6576-6722:-1
so has part: feature:6576-6722:-1:exon
subclass of: SO_0000010

position:6576:-1
position: 6576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6722:-1
position: 6722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6576-6722:-1:exon

SGP1_RS34820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34820
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNDILTYTCLHLNTLCAVTGNLGVPFFNQAMKALLNSPMTIELFLAQE
SIO_010081: SGP1_RS34820
subclass of: SO_0000673
so part of: SGP1_RS34820
location: complement(6576..6722)
location: region:6576-6722:-1
so has part: feature:6576-6722:-1:exon

WP_242451027.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6576-6722:-1:exon

SGP1_RS22750
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22750
so part of: sequence
location: complement(6869..7270)
location: region:6869-7270:-1
so has part: feature:6869-7270:-1:exon
subclass of: SO_0000010

position:6869:-1
position: 6869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7270:-1
position: 7270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6869-7270:-1:exon

SGP1_RS22750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22750
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MENYRLMKYYDIPLSEIHKAMRLLQKLMDVGYLAREIAQAALAEEVKRAEKKQVRVWHYEICNVSGNWHEDETSHKPDEEMFVVRNVQPVYFGEYTEPENSTTWINVSDCLPELDTPVLGCWFSDNGNFVLDC
SIO_010081: SGP1_RS22750
subclass of: SO_0000673
so part of: SGP1_RS22750
location: complement(6869..7270)
location: region:6869-7270:-1
so has part: feature:6869-7270:-1:exon

WP_041867763.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6869-7270:-1:exon

SGP1_RS22755
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22755
so part of: sequence
location: complement(7271..7480)
location: region:7271-7480:-1
so has part: feature:7271-7480:-1:exon
subclass of: SO_0000010

position:7271:-1
position: 7271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7480:-1
position: 7480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7271-7480:-1:exon

SGP1_RS22755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22755
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHPEEITNIAYRKFLREGDYTVFAAWINGECSVVVNSMIYTLEEFYGETPTTDVEQAARDCVAELEQRR
SIO_010081: SGP1_RS22755
subclass of: SO_0000673
so part of: SGP1_RS22755
location: complement(7271..7480)
location: region:7271-7480:-1
so has part: feature:7271-7480:-1:exon

WP_041867764.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7271-7480:-1:exon

SGP1_RS22760
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22760
old locus tag: SGP3_0006
so part of: sequence
location: complement(7874..8395)
location: region:7874-8395:-1
so has part: feature:7874-8395:-1:exon
subclass of: SO_0000010

position:7874:-1
position: 7874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8395:-1
position: 8395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7874-8395:-1:exon

SGP1_RS22760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22760
old locus tag: SGP3_0006
function: putative plasmid replication associated protein
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000007848.1
GO process: GO:0006260 - DNA replication [Evidence IEA]; GO:0006276 - plasmid maintenance [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication/maintenance protein RepL
translation: MEEVRYESNPFLENMIIPLGRKTVKLSPLGRDDNVLVNQLTGEVCGTHVATYKKVDSQCFVKLFTENIGLAFNLKSAGIKALTVLVFIVQKSAMNKDVVNLDSYTLKEFLKFNDRMMLSMTTFRRGLVELEEAKIIAKALRKGHFFINPNFVFNGDRIAFSTILEKENAMLSN
SIO_010081: SGP1_RS22760
subclass of: SO_0000673
so part of: SGP1_RS22760
location: complement(7874..8395)
location: region:7874-8395:-1
so has part: feature:7874-8395:-1:exon

WP_011279280.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7874-8395:-1:exon