Sodalis glossinidius str. 'morsitans' plasmid pSG3, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Bruguierivoracaceae; Sodalis.
Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host
Submitted (14-DEC-2004) Contact:Masahira Hattori Graduate School of Frontier Sciences, University of Tokyo; 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8561, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP008235.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/17/2023 01:23:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,017\nCDSs (total) :: 4,918\nGenes (coding) :: 3,718\nCDSs (with protein) :: 3,718\nGenes (RNA) :: 99\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 71\nncRNAs :: 6\nPseudo Genes (total) :: 1,200\nCDSs (without protein) :: 1,200\nPseudo Genes (ambiguous residues) :: 0 of 1,200\nPseudo Genes (frameshifted) :: 890 of 1,200\nPseudo Genes (incomplete) :: 445 of 1,200\nPseudo Genes (internal stop) :: 423 of 1,200\nPseudo Genes (multiple problems) :: 498 of 1,200\nPseudo Genes (short protein) :: 1 of 1,200\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
isolated from secondary symbiont of Glossina morsitans morsitans
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015981295.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016257341.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
PBSX family phage terminase large subunit
COORDINATES: protein motif:HMM:NF022494.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012422.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix transcriptional regulator
putative plasmid replication associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_000007848.1
GO:0006260 - DNA replication [Evidence IEA]; GO:0006276 - plasmid maintenance [Evidence IEA]