Sodalis glossinidius str. 'morsitans' plasmid pSG2, complete sequence.
type: Entry
definition: Sodalis glossinidius str. 'morsitans' plasmid pSG2, complete sequence.
sequence version: NC_007714.1
sequence date: 2023-04-17
sequence: sequence
division: CON
label: NC_007714.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00061079
keyword: RefSeq
source: Sodalis glossinidius str. 'morsitans'
organism: Sodalis glossinidius str. 'morsitans'
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Bruguierivoracaceae; Sodalis.
reference: 1
references: 16365377
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP008234.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/17/2023 01:23:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,017\nCDSs (total) :: 4,918\nGenes (coding) :: 3,718\nCDSs (with protein) :: 3,718\nGenes (RNA) :: 99\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 71\nncRNAs :: 6\nPseudo Genes (total) :: 1,200\nCDSs (without protein) :: 1,200\nPseudo Genes (ambiguous residues) :: 0 of 1,200\nPseudo Genes (frameshifted) :: 890 of 1,200\nPseudo Genes (incomplete) :: 445 of 1,200\nPseudo Genes (internal stop) :: 423 of 1,200\nPseudo Genes (multiple problems) :: 498 of 1,200\nPseudo Genes (short protein) :: 1 of 1,200\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 27240
topology: circular
so has quality: SO_0000988
location: 1..27240
location: region:1-27240:1
RO_0002162: 343509

NC_007714
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00061079
type: BioSample
SIO_000068: biosample

1
title: Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host
author: Toh, H.
author: Weiss, B.L.
author: Perkin, S.A.
author: Yamashita, A.
author: Oshima, K.
author: Hattori, M.
author: Aksoy, S.
journal: Genome Res
volume: 16
issue: 2
pages: 149-156
year: 2006
pubmed: 16365377

16365377
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Hattori, M.
author: Yamashita, A.
author: Toh, H.
author: Oshima, K.
author: Shiba, T.
journal: Submitted (14-DEC-2004) Contact:Masahira Hattori Graduate School of Frontier Sciences, University of Tokyo; 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8561, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27240:1
position: 27240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-27240:1:source
so part of: sequence
organism: Sodalis glossinidius str. 'morsitans'
mol type: genomic DNA
strain: morsitans
isolation source: isolated from secondary symbiont of Glossina morsitans morsitans
host: Glossina morsitans morsitans
plasmid: pSG2

343509
type: Taxonomy
SIO_000068: taxonomy

SGP1_RS25310
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS25310
so part of: sequence
location: complement(join(26366..27240,1..850))
location: region:1-27240:-1
so has part: feature:1-850:-1:exon
so has part: feature:26366-27240:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27240:-1
position: 27240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-850:-1:exon

position:850:-1
position: 850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:26366-27240:-1:exon

position:26366:-1
position: 26366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SGP1_RS25310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS25310
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: M12 family metallo-peptidase
translation: MQKKSITITPNELKNGKLPSGYDEVIFKLSDGNWTKNITLPLQPDNNNRVIIRSSAKFTAVLDVTPVDVPLNTLDITTGYEYKFVYSQALEMWVISGDSMSYFTPNNNGPVIPEKPAFFVFYTIADADWVPEIFLPAKADNGSYIIVRSRAAYSSKVSTKNMLFASTTQIKKNDEYTFKFLSNFGGWVIDSAPVRTLRADSIDFQIPSLTSQHTQVEFSNGNWIEAIKLPAVAGDRDKVSLTSSANYTTTIDSSNVNMPGMMKLHTGERYDFFYIAENKQWQLMKYPDSIYYAKDIQNGNIMPLIRPRTIIKVGDSNWQPVLKLPLGQQYGSRVIFQSSATYPFQVLYDDKNYSVTQGEIVAFKVDEDTFWQKETITLNLLIVYSDKAADKLGEHVIRNRLIEAFNLTNEALENSGANFRFRLVGLKQIIAKKNWKTLSNVISELRDDPTVQGWRRDLKACGVYYEGTEDGCGMAYVKADSHSMIASGSINCGTTVMRHELGHNMGLKHAGESKSYNQGYGKINTIMGGNGIPYYSTPQRYTPDYGIRMGIRDGSGSPRNYRHKLKGGDSENGI
SIO_010081: SGP1_RS25310
subclass of: SO_0000673
so part of: SGP1_RS25310
location: complement(join(26366..27240,1..850))
location: region:1-27240:-1
so has part: feature:1-850:-1:exon
so has part: feature:26366-27240:-1:exon

WP_050747963.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-850:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:26366-27240:-1:exon

SGP1_RS30460
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS30460
so part of: sequence
location: complement(861..1130)
location: region:861-1130:-1
so has part: feature:861-1130:-1:exon
subclass of: SO_0000010

position:861:-1
position: 861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1130:-1
position: 1130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:861-1130:-1:exon

SGP1_RS30460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS30460
inference: COORDINATES: protein motif:HMM:NF013677.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MARLARQHGINDNLLFTWRQRYRHLIDIPADHAVGEPIAIDDTLVPVVLKRQLPLLPAASPAPAIPPKPDQVCEVIIGRARLKLYNNQK
SIO_010081: SGP1_RS30460
subclass of: SO_0000673
so part of: SGP1_RS30460
location: complement(861..1130)
location: region:861-1130:-1
so has part: feature:861-1130:-1:exon

WP_041867747.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:861-1130:-1:exon

SGP1_RS22550
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22550
pseudo: true
so part of: sequence
location: complement(1469..2274)
location: region:1469-2274:-1
so has part: feature:1469-2274:-1:exon
subclass of: SO_0000010

position:1469:-1
position: 1469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2274:-1
position: 2274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1469-2274:-1:exon

SGP1_RS22550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011410900.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5 family transposase
SIO_010081: SGP1_RS22550
subclass of: SO_0000673
so part of: SGP1_RS22550
location: complement(1469..2274)
location: region:1469-2274:-1
so has part: feature:1469-2274:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1469-2274:-1:exon

SGP1_RS25315
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS25315
old locus tag: SGP2_0001
so part of: sequence
location: complement(2540..3202)
location: region:2540-3202:-1
so has part: feature:2540-3202:-1:exon
subclass of: SO_0000010

position:2540:-1
position: 2540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3202:-1
position: 3202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2540-3202:-1:exon

SGP1_RS25315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS25315
old locus tag: SGP2_0001
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSQENKTPRIARDTLITELLGDLGVVHDEIKKPPSKIENFLADSIRLVAKSVNDVESTAEKIKTETQEFLSKKELENHKISSQEVSLGEIELLKTKISQTINNAVEKSIGEPLFESKETINKLNNQLHNSISPMPRSGWATIIILIFVSTFFGMFSLFSYLKNISLQQKNMELQQDINFENRRFAYHMEVINRLPKNTQAQYDEEKKKFIKDMEKRIHQD
SIO_010081: SGP1_RS25315
subclass of: SO_0000673
so part of: SGP1_RS25315
location: complement(2540..3202)
location: region:2540-3202:-1
so has part: feature:2540-3202:-1:exon

WP_011279239.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2540-3202:-1:exon

SGP1_RS22560
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
gene: stbB
locus tag: SGP1_RS22560
pseudo: true
so part of: sequence
location: complement(3208..3925)
location: region:3208-3925:-1
so has part: feature:3208-3925:-1:exon
subclass of: SO_0000010

position:3208:-1
position: 3208
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3925:-1
position: 3925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3208-3925:-1:exon

SGP1_RS22560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
gene: stbB
locus tag: SGP1_RS22560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004666800.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: StbB family protein
SIO_010081: SGP1_RS22560
subclass of: SO_0000673
so part of: SGP1_RS22560
location: complement(3208..3925)
location: region:3208-3925:-1
so has part: feature:3208-3925:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3208-3925:-1:exon

SGP1_RS30465
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS30465
so part of: sequence
location: complement(4084..4332)
location: region:4084-4332:-1
so has part: feature:4084-4332:-1:exon
subclass of: SO_0000010

position:4084:-1
position: 4084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4332:-1
position: 4332
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4084-4332:-1:exon

SGP1_RS30465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS30465
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGDSIKENLKELIFLLRDPDTKSKQAAFNSCYRQLTKAKNLASWETIVKKIKSETGIKFDSRIASNMYGRTKRKLEKNFFLA
SIO_010081: SGP1_RS30465
subclass of: SO_0000673
so part of: SGP1_RS30465
location: complement(4084..4332)
location: region:4084-4332:-1
so has part: feature:4084-4332:-1:exon

WP_148203696.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4084-4332:-1:exon

SGP1_RS22565
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
gene: mobC
locus tag: SGP1_RS22565
so part of: sequence
location: 4408..4770
location: region:4408-4770:1
so has part: feature:4408-4770:1:exon
subclass of: SO_0000010

position:4408:1
position: 4408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4770:1
position: 4770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4408-4770:1:exon

SGP1_RS22565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
gene: mobC
locus tag: SGP1_RS22565
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006707609.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MAEKKNKDRVVTFRLSQSDFAQFEEKLASSNMKKSAFFRKVFLNANVSLTVKAKPSKDLESLTFLFNKYSNNLNQIAHQVNSAYVSGKVSSSLYTSVNNTLVDIRQLLLSGIQAVFNVRL
SIO_010081: SGP1_RS22565
subclass of: SO_0000673
so part of: SGP1_RS22565
location: 4408..4770
location: region:4408-4770:1
so has part: feature:4408-4770:1:exon

WP_041867748.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4408-4770:1:exon

SGP1_RS34790
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34790
so part of: sequence
location: 4757..6211
location: region:4757-6211:1
so has part: feature:4757-6211:1:exon
subclass of: SO_0000010

position:4757:1
position: 4757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6211:1
position: 6211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4757-6211:1:exon

SGP1_RS34790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34790
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYAYEDEEYNFYAEAHLPKIKSVADRKTGETVERKPHIHIFVPQRNLLSGKEMNPRGMAERQVAYFEAFQEYINKTYHLASPREHVRVDPTSATDVLSRYKGDDFRGRHQAFKKQLVRDVIDKAIFSRGDFYAHVASFGDTRVRHQGKDNEYLAVRLPGDEKFTNLKETIFQGDFIVRREFKSPLWIRRLSVTDCGNGLSGQKKSNMLARRRRLFDSVTRRRRLKRNLRSDLSAGRERRRNAVEYHTGKFAAIPGVPTVSASIHRAGYRIRPGMGGEDAFTLNMPPYARHPHQVTTIAQIQRRGTVLFGEEDRPLRSTAVSPVCRVMPKPDRNASFVAAYFLQRYEENQLHPAQRQDIRAIDTQFYAARRAIQCDERLTRNEKSQYVSILTFERLKVHLAIKHPTVPYEKEMPDMESADIRKLIKTPRILDNSISGVPPEDNAIPPARERFARLIQNLNDHMADKRIRKRQRVLSTICIPSGRN
SIO_010081: SGP1_RS34790
subclass of: SO_0000673
so part of: SGP1_RS34790
location: 4757..6211
location: region:4757-6211:1
so has part: feature:4757-6211:1:exon

WP_050747960.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4757-6211:1:exon

SGP1_RS34795
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34795
so part of: sequence
location: 6220..6966
location: region:6220-6966:1
so has part: feature:6220-6966:1:exon
subclass of: SO_0000010

position:6220:1
position: 6220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6966:1
position: 6966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6220-6966:1:exon

SGP1_RS34795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34795
inference: COORDINATES: protein motif:HMM:NF037421.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LPD7 domain-containing protein
translation: MHYLDKKTDRTLFIDIGKAIVVRKSAMTASAVEIALALAKEKFGSTLTIKGSQAFKDQIVEVVAQKNLDIYFTNKAMNQQLEARKAELEIERGGQRIEKSENANTDRAEDEKLAEATTTAHGQEEKPVVASDAHSSAPQLGAEKAQKGVYQGVLLEHGAASYKFKPDMNKPEDRRDDSYFVTLQTADGKTQTLWGVDLENAVSAGHGKGQRLTVTVSENNSRAVMLLGSTPTMIMMARTWHKKEKCQL
SIO_010081: SGP1_RS34795
subclass of: SO_0000673
so part of: SGP1_RS34795
location: 6220..6966
location: region:6220-6966:1
so has part: feature:6220-6966:1:exon

WP_050747961.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6220-6966:1:exon

SGP1_RS22575
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22575
old locus tag: SGP2_0002
so part of: sequence
location: 7034..7513
location: region:7034-7513:1
so has part: feature:7034-7513:1:exon
subclass of: SO_0000010

position:7034:1
position: 7034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7513:1
position: 7513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7034-7513:1:exon

SGP1_RS22575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22575
old locus tag: SGP2_0002
function: putative single stranded DNA-binding
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004140796.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: single-stranded DNA-binding protein
translation: MAHGRLAADVLSRITDKGTTMAMGRLAVSLPCHKAESGEALLWLGLVAFGKQAELLARHGEGELISVSGSMQINQWMGQYGALQTGYQVVADAIISARTVRPGGGNKPAAPTPSPSSSAPAQPIMDYESANADAARNWEIYQMGADGDAFDQRPPFDDI
SIO_010081: SGP1_RS22575
subclass of: SO_0000673
so part of: SGP1_RS22575
location: 7034..7513
location: region:7034-7513:1
so has part: feature:7034-7513:1:exon

WP_011279237.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7034-7513:1:exon

SGP1_RS22580
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22580
old locus tag: SGP2_0003
pseudo: true
so part of: sequence
location: 7595..7892
location: region:7595-7892:1
so has part: feature:7595-7892:1:exon
subclass of: SO_0000010

position:7595:1
position: 7595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7892:1
position: 7892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7595-7892:1:exon

SGP1_RS22580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22580
old locus tag: SGP2_0003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015981322.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0030261 - chromosome condensation [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: HU family DNA-binding protein
SIO_010081: SGP1_RS22580
subclass of: SO_0000673
so part of: SGP1_RS22580
location: 7595..7892
location: region:7595-7892:1
so has part: feature:7595-7892:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7595-7892:1:exon

SGP1_RS22585
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22585
old locus tag: SGP2_0004
so part of: sequence
location: 8007..8648
location: region:8007-8648:1
so has part: feature:8007-8648:1:exon
subclass of: SO_0000010

position:8007:1
position: 8007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8648:1
position: 8648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8007-8648:1:exon

SGP1_RS22585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22585
old locus tag: SGP2_0004
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007425125.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MIVAVANTKGGVGKTTLAVQLSLARALAGRDVWLIDGDRQGTAMAAIAARSEAEKQPGIACAQYADGPQIRAQVQQQLGKWDDIIIDVGGRDSTALRAALILADTLLVPFAPRSYDVWALDDMAELVDDARSVRDGLRAFAVMNQADPGPLSTDNLDAIAAVTEVPQLIYLPTPLRRRKAFSNAGGAGLSVTELSPRDPKAIAEINALVKRLF
SIO_010081: SGP1_RS22585
subclass of: SO_0000673
so part of: SGP1_RS22585
location: 8007..8648
location: region:8007-8648:1
so has part: feature:8007-8648:1:exon

WP_011279235.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8007-8648:1:exon

SGP1_RS22590
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22590
old locus tag: SGP2_0005
so part of: sequence
location: 8689..8952
location: region:8689-8952:1
so has part: feature:8689-8952:1:exon
subclass of: SO_0000010

position:8689:1
position: 8689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8952:1
position: 8952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8689-8952:1:exon

SGP1_RS22590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22590
old locus tag: SGP2_0005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012817666.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix domain-containing protein
translation: MAIHKKTKVAETKEAAVAAFVTGAPDGQSVAVETVAPYEKGLPKGNKRQISITIAPELLRKVDERADAMGTGRSAFISMALYKALKE
SIO_010081: SGP1_RS22590
subclass of: SO_0000673
so part of: SGP1_RS22590
location: 8689..8952
location: region:8689-8952:1
so has part: feature:8689-8952:1:exon

WP_011279234.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8689-8952:1:exon

SGP1_RS22595
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22595
old locus tag: SGP2_0006
so part of: sequence
location: 8998..9174
location: region:8998-9174:1
so has part: feature:8998-9174:1:exon
subclass of: SO_0000010

position:8998:1
position: 8998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9174:1
position: 9174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8998-9174:1:exon

SGP1_RS22595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22595
old locus tag: SGP2_0006
function: putative regulatory protein Rop
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000166328.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Rop family plasmid primer RNA-binding protein
translation: MTKQEQSALKMAGFIKSQTLLLLEKLDQLELDSCADECEELHELAEELYLHLSKELEK
SIO_010081: SGP1_RS22595
subclass of: SO_0000673
so part of: SGP1_RS22595
location: 8998..9174
location: region:8998-9174:1
so has part: feature:8998-9174:1:exon

WP_011279233.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8998-9174:1:exon

SGP1_RS22600
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22600
pseudo: true
so part of: sequence
location: 9171..10114
location: region:9171-10114:1
so has part: feature:9171-10114:1:exon
subclass of: SO_0000010

position:9171:1
position: 9171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10114:1
position: 10114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9171-10114:1:exon

SGP1_RS22600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22600
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006707073.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Rpn family recombination-promoting nuclease/putative transposase
SIO_010081: SGP1_RS22600
subclass of: SO_0000673
so part of: SGP1_RS22600
location: 9171..10114
location: region:9171-10114:1
so has part: feature:9171-10114:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9171-10114:1:exon

SGP1_RS34800
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34800
so part of: sequence
location: 10491..10817
location: region:10491-10817:1
so has part: feature:10491-10817:1:exon
subclass of: SO_0000010

position:10491:1
position: 10491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10817:1
position: 10817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10491-10817:1:exon

SGP1_RS34800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34800
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFSVFTLGWIDDETDRGIFKFDDEVIADKLVNGHQDETINIHAWLTLPSMKIINLAFNTTFSILHRHKGGVIVKKEDDITKFSYKPMLVGDMYLSKIGILKNVTWYEI
SIO_010081: SGP1_RS34800
subclass of: SO_0000673
so part of: SGP1_RS34800
location: 10491..10817
location: region:10491-10817:1
so has part: feature:10491-10817:1:exon

WP_243466343.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10491-10817:1:exon

SGP1_RS28765
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS28765
old locus tag: SGP2_0007
so part of: sequence
location: 11019..11363
location: region:11019-11363:1
so has part: feature:11019-11363:1:exon
subclass of: SO_0000010

position:11019:1
position: 11019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11363:1
position: 11363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11019-11363:1:exon

SGP1_RS28765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS28765
old locus tag: SGP2_0007
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015700040.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLLTAPTTSMLYPELASESVIAVRMKLGMSRISLNYRRLPGNIEPMLVIDFFNNKGKLYTLCYNFPPDTPGRTERRTSLLIHLIQKIWVNSVTWLRNQLFNYLFGYENHDKIV
SIO_010081: SGP1_RS28765
subclass of: SO_0000673
so part of: SGP1_RS28765
location: 11019..11363
location: region:11019-11363:1
so has part: feature:11019-11363:1:exon

WP_011279230.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11019-11363:1:exon

SGP1_RS28770
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS28770
old locus tag: SGP2_0008
so part of: sequence
location: 11347..12633
location: region:11347-12633:1
so has part: feature:11347-12633:1:exon
subclass of: SO_0000010

position:11347:1
position: 11347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12633:1
position: 12633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11347-12633:1:exon

SGP1_RS28770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS28770
old locus tag: SGP2_0008
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011409936.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cytosine permease
translation: MTRSSKNDYAFDRVPLSARVDLFSITLIRIGGVTALAQFMVGATLGHSMSFYHAIFATLLGSLILEFVSLGLGIAGVREGLTTSLLARWCGFGRIGSVLIGGLITISLLGWFGIQNSILAEGISYAFNSKMPFTLSAILSGLILTLLVAFGFRALEWTAKITVPIFFIIVVLILINVLQGNDFEQLILDLPKGNVITLGAGATVVAGGHILGALITPDMSRYCKNEKHVFWMITASIIVSEFVINGVAILVAHALNTSDVVTIMTQSAGWIGLLSVILSAIKINDLNLYSSSIGCANAIEGITNKKPSYIYLTMVLGVVGTVLSSMGILARFVDFLTFLGVLFPPIAGVMLVDYYVLRTSRTLLRETQREGGLPGKSSTPLIGWLAVISCFCGTLIGLIIEAGIPSLNSLIAASFIYFGLSLILKNKY
SIO_010081: SGP1_RS28770
subclass of: SO_0000673
so part of: SGP1_RS28770
location: 11347..12633
location: region:11347-12633:1
so has part: feature:11347-12633:1:exon

WP_011412272.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11347-12633:1:exon

SGP1_RS22615
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22615
old locus tag: SGP2_0009
so part of: sequence
location: 12644..13729
location: region:12644-13729:1
so has part: feature:12644-13729:1:exon
subclass of: SO_0000010

position:12644:1
position: 12644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13729:1
position: 13729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12644-13729:1:exon

SGP1_RS22615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22615
old locus tag: SGP2_0009
inference: COORDINATES: protein motif:HMM:NF017812.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF917 domain-containing protein
translation: MKLLNEDDIDFISVGASFLSSGGGGDPYIGKKLVIQEIEKNGPIKLASIDEFSQNDLVVAIGGIGSPAIIIEKIPNGEEAEDAFLLMEHYLNKKISAIYPIEIGGINSLLPLAAASRVGLPVVDVDTMGRAFPEYHMTTLSIGGISASPFIVIDSMKNSCIIHTKNNLMAEKIARDSCNEMGGAAFLSAYPVTCQMLKKSAILGTLTLSWEIGKKIEMITNVNGSVVDAVLCMLNGFLLCTAKIINVDRAILGGFISGIVYLEGIGEYKNKHFKVHFKNEYLLIEEDNNVLCSTPDSIILLDEDRGIPILSERLKYGMHVNAIAIPSNEKWRTKSGIDIVGPKCFGYDIDYQPVENLRREK
SIO_010081: SGP1_RS22615
subclass of: SO_0000673
so part of: SGP1_RS22615
location: 12644..13729
location: region:12644-13729:1
so has part: feature:12644-13729:1:exon

WP_011412273.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12644-13729:1:exon

SGP1_RS22620
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22620
old locus tag: SGP2_0010
so part of: sequence
location: 13726..15279
location: region:13726-15279:1
so has part: feature:13726-15279:1:exon
subclass of: SO_0000010

position:13726:1
position: 13726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15279:1
position: 15279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13726-15279:1:exon

SGP1_RS22620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22620
old locus tag: SGP2_0010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006704306.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hydantoinase/oxoprolinase family protein
translation: MIFRLGVDVGGTHTDAVVLNEKNDVVASAKNLTTVDIMSGIDRSISEVLVDSNINVCSIKSVMIGTTHYSNAIVERKDLNSVAHFRLGAPNTLSIPPLSDVPGDLKSKISIYKFIVDGGVEYNGDILSSIDQCEIRECLQKIKGKVDAVSICGVFSPFFNMQEIRVKEIVIEELGNIPVTLSHNIGNIGLLERENSTILNASLLLLSNKVVAVIHEILSKKNINAWLYFSQNDGTLMPEKYAREYPILMVSSGQTNSMRGASHLGKIKNAMIVDVGGTTTDIGLVSNGFPHKSSFVSTIGGVRTNFHMPDIESIALGGGSIVNILPNGKVKIGPASVGYNLAKYSLVFGGDVLTITDIAVAKGLIAIGDVKLVKHLPIDLVNQVIDLYIDILGKAIHRMKINNNDIPLIVVGGGGFIINKEFKGISSILRPEKYDVANAIGVAMGMVGGQAEKLFSLKQISLDCAIEKTKKHAIQNAINAGALPDSVIVIDFEYEHIPYSTESEVRIFSKAAGVPYN
SIO_010081: SGP1_RS22620
subclass of: SO_0000673
so part of: SGP1_RS22620
location: 13726..15279
location: region:13726-15279:1
so has part: feature:13726-15279:1:exon

WP_011279227.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13726-15279:1:exon

SGP1_RS22625
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22625
old locus tag: SGP2_0011
so part of: sequence
location: complement(15395..16078)
location: region:15395-16078:-1
so has part: feature:15395-16078:-1:exon
subclass of: SO_0000010

position:15395:-1
position: 15395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16078:-1
position: 16078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15395-16078:-1:exon

SGP1_RS22625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22625
old locus tag: SGP2_0011
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016858080.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PAS domain-containing protein
translation: MEGKIKKETIGPLISFMEKSKTPWGIKDRESRFIYMNSAALHFGNLPKNFNPEGLFDSDFPAEWSELSTQFIEHDRLAEKTGDHIEIIQTHYFYGSKTLEPYLCEKFPIYNEIGECIGTANFSKKLKTASRLDLINNVSPSVIFTTPPNNMFTQKELEIIFFSINRLTAKEIAKRFNISHRTIENRLQVIYNKAGVNSVNGLTEFCISCGLNQYVPPNLLHKEIKII
SIO_010081: SGP1_RS22625
subclass of: SO_0000673
so part of: SGP1_RS22625
location: complement(15395..16078)
location: region:15395-16078:-1
so has part: feature:15395-16078:-1:exon

WP_070108811.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15395-16078:-1:exon

SGP1_RS22630
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
gene: repA
locus tag: SGP1_RS22630
old locus tag: SGP2_0012
so part of: sequence
location: 16767..17663
location: region:16767-17663:1
so has part: feature:16767-17663:1:exon
subclass of: SO_0000010

position:16767:1
position: 16767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17663:1
position: 17663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16767-17663:1:exon

SGP1_RS22630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
gene: repA
locus tag: SGP1_RS22630
old locus tag: SGP2_0012
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011412247.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication initiator RepA
translation: MDKPNLSVSFQVTPQAFSSRCYVKNPHPCYRPPKEDVKPPRIIDAMRKAARENAPSQHPLWRIAPRYHAMTHELLGNERAMNLHRARAVDAILECLAAHVNIVTGKVYMSLAQISDACGLTTYNAAGKPCYSRASRAINEHLEAIGAVLCERIWDDTTASYIPNIIWVTELFFVLIGYEYGKYLSAQQQQLSWENQKLRDAGEGPITLTEARRRAKTEHIRRAFDYRTKKLARSKQRRQARKLEAMDEQQARKHILNDLVKLYSKEELGEMGHVELSRMVTQRYHAMCKLATAPPGTG
SIO_010081: SGP1_RS22630
subclass of: SO_0000673
so part of: SGP1_RS22630
location: 16767..17663
location: region:16767-17663:1
so has part: feature:16767-17663:1:exon

WP_011279225.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16767-17663:1:exon

SGP1_RS22635
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22635
old locus tag: SGP2_0013
so part of: sequence
location: complement(18413..19306)
location: region:18413-19306:-1
so has part: feature:18413-19306:-1:exon
subclass of: SO_0000010

position:18413:-1
position: 18413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19306:-1
position: 19306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18413-19306:-1:exon

SGP1_RS22635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22635
old locus tag: SGP2_0013
function: putative transposase, YhgA-like
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011147726.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Rpn family recombination-promoting nuclease/putative transposase
translation: MSKKFTPTPHDAVFKQFLHDKATAQDFFDIWLPDDIKALCDWETLKPESETFIDPDMKPYQSDILYSVNAKGADGYIYCVLEHQSSPDKLMAWRLMRYSMAAMQRHLEAGHDKLPLVFPVLFYCGEKSPHPYSTNWLDCFERPDIAAKIYSQPFRLADVTTLDDDAIMQHRRMALLELIQKHIRRRDMTELLDSIVKLLSYNYYTDTQVITMMNYLIQEGNAASPRTFITEIAKRAEKHEEALMTIAEALKQEGRQEGIQEGVQRVARQLLADGVSPSIVKHATGLNENELMNLKNK
SIO_010081: SGP1_RS22635
subclass of: SO_0000673
so part of: SGP1_RS22635
location: complement(18413..19306)
location: region:18413-19306:-1
so has part: feature:18413-19306:-1:exon

WP_011279251.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18413-19306:-1:exon

SGP1_RS28775
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS28775
old locus tag: SGP2_0014
so part of: sequence
location: complement(19303..19869)
location: region:19303-19869:-1
so has part: feature:19303-19869:-1:exon
subclass of: SO_0000010

position:19303:-1
position: 19303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19869:-1
position: 19869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19303-19869:-1:exon

SGP1_RS28775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS28775
old locus tag: SGP2_0014
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011412260.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ProQ/FinO family protein
translation: MTEQKRPTLTIKRKPKIFVNPKHANNPAPPPPKPAKQPKAKAPKPVKESKPKQEPPKPLSREERMARNRAKKLRRGQEAIAGLVAHWPQLFSLEQPNPLKIGIAADIYKDIKARKLELTRAKAGASLMFYTQTPVYLETVCVGGSRFDLSGQPCGAITEKQKAYAQEQLEKWRAEADATASQGAEPTP
SIO_010081: SGP1_RS28775
subclass of: SO_0000673
so part of: SGP1_RS28775
location: complement(19303..19869)
location: region:19303-19869:-1
so has part: feature:19303-19869:-1:exon

WP_083765159.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19303-19869:-1:exon

SGP1_RS22650
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22650
old locus tag: SGP2_0016
so part of: sequence
location: complement(19992..20555)
location: region:19992-20555:-1
so has part: feature:19992-20555:-1:exon
subclass of: SO_0000010

position:19992:-1
position: 19992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20555:-1
position: 20555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19992-20555:-1:exon

SGP1_RS22650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22650
old locus tag: SGP2_0016
inference: COORDINATES: protein motif:HMM:NF022590.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2913 family protein
translation: MAFCALVALHFAREDGIASSPYAENLFLIRWLAQAQKQKRFPKSVAVDIEWLLEKGRKQGPAGKLKQHLEYLWQSCSGDVIAQSDLFRLTFATEYLKDQGWNNEVMSEREWLSGRFTESESNQNGFYAEKSALNAAYSEKGKQLHALECRLTGQVNIFMDTLKKYGLITHRAASDSQYHPVMLTPNK
SIO_010081: SGP1_RS22650
subclass of: SO_0000673
so part of: SGP1_RS22650
location: complement(19992..20555)
location: region:19992-20555:-1
so has part: feature:19992-20555:-1:exon

WP_243466342.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19992-20555:-1:exon

SGP1_RS28780
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS28780
so part of: sequence
location: 20979..21239
location: region:20979-21239:1
so has part: feature:20979-21239:1:exon
subclass of: SO_0000010

position:20979:1
position: 20979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21239:1
position: 21239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20979-21239:1:exon

SGP1_RS28780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS28780
inference: COORDINATES: protein motif:HMM:NF012422.2
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LuxR C-terminal-related transcriptional regulator
translation: MKKSIVDDFCMNNSFTSKLSEKELEVLLMSCAGFSRDEIAMKLNVSVNTIGSHIKSSSKKYELDTFSQLKALFFFNFLRMIINHIE
SIO_010081: SGP1_RS28780
subclass of: SO_0000673
so part of: SGP1_RS28780
location: 20979..21239
location: region:20979-21239:1
so has part: feature:20979-21239:1:exon

WP_083765160.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20979-21239:1:exon

SGP1_RS25330
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS25330
old locus tag: SGP2_0017
so part of: sequence
location: 21849..22469
location: region:21849-22469:1
so has part: feature:21849-22469:1:exon
subclass of: SO_0000010

position:21849:1
position: 21849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22469:1
position: 22469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21849-22469:1:exon

SGP1_RS25330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS25330
old locus tag: SGP2_0017
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MANFFDWLDAKKIHFSRTPGGQTLISDDVDLAGSDIQRLPDELLVGGHLILRNTPLATLPIGLNVLEDLDLRNTSITALPPDLSVGGGLFLENTRIVSLPESFRVEDALDLENSLITTLPRNLWVGGYLNLRGTAISSLPEDWYVEGPLLLDVEKIASPLAWRYIKLADLNADDHLMGDYCLDTSSVGDFFDKADKEGVEVFAVWV
SIO_010081: SGP1_RS25330
subclass of: SO_0000673
so part of: SGP1_RS25330
location: 21849..22469
location: region:21849-22469:1
so has part: feature:21849-22469:1:exon

WP_011279248.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21849-22469:1:exon

SGP1_RS22660
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22660
old locus tag: SGP2_0018
so part of: sequence
location: 22521..22811
location: region:22521-22811:1
so has part: feature:22521-22811:1:exon
subclass of: SO_0000010

position:22521:1
position: 22521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22811:1
position: 22811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22521-22811:1:exon

SGP1_RS22660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22660
old locus tag: SGP2_0018
function: putative type IV prepilin peptidase
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGDDTSDTFQQMVLFMLVCNLWVKGDRQGALFGEGDIYLITAVGLWLSPIFSFVYIGIAYVMAMAWSWRKKHVAFVPFLYLTFYIYVVIEPSINPL
SIO_010081: SGP1_RS22660
subclass of: SO_0000673
so part of: SGP1_RS22660
location: 22521..22811
location: region:22521-22811:1
so has part: feature:22521-22811:1:exon

WP_011279247.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22521-22811:1:exon

SGP1_RS22665
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22665
old locus tag: SGP2_0019
so part of: sequence
location: 22907..23347
location: region:22907-23347:1
so has part: feature:22907-23347:1:exon
subclass of: SO_0000010

position:22907:1
position: 22907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23347:1
position: 23347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22907-23347:1:exon

SGP1_RS22665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22665
old locus tag: SGP2_0019
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011988434.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lytic transglycosylase domain-containing protein
translation: MAACFESAARTYRIDPLLLIAIAEVESGMNPRAVGLNRRQGKVVSEDVGLMQINSSWFPFLKNKWGITREKLLNDPCQNIYVGAYILAKNISANGVNWESVGAYNAGFKNANAPFRMWYAKRVYARYLSFLDKERGDVFSRLSMLK
SIO_010081: SGP1_RS22665
subclass of: SO_0000673
so part of: SGP1_RS22665
location: 22907..23347
location: region:22907-23347:1
so has part: feature:22907-23347:1:exon

WP_148203697.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22907-23347:1:exon

SGP1_RS22675
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22675
pseudo: true
so part of: sequence
location: 23728..>24054
location: region:23728-24054:1
so has part: feature:23728-24054:1:exon
subclass of: SO_0000010

position:23728:1
position: 23728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24054:1
position: 24054
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23728-24054:1:exon

SGP1_RS22675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22675
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076612175.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: SGP1_RS22675
subclass of: SO_0000673
so part of: SGP1_RS22675
location: 23728..>24054
location: region:23728-24054:1
so has part: feature:23728-24054:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23728-24054:1:exon

SGP1_RS30470
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS30470
pseudo: true
so part of: sequence
location: complement(<24090..24257)
location: region:24090-24257:-1
so has part: feature:24090-24257:-1:exon
subclass of: SO_0000010

position:24090:-1
position: 24090
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:24257:-1
position: 24257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24090-24257:-1:exon

SGP1_RS30470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS30470
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011410598.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Rpn family recombination-promoting nuclease/putative transposase
SIO_010081: SGP1_RS30470
subclass of: SO_0000673
so part of: SGP1_RS30470
location: complement(<24090..24257)
location: region:24090-24257:-1
so has part: feature:24090-24257:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24090-24257:-1:exon

SGP1_RS31265
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS31265
old locus tag: SGP2_0023
so part of: sequence
location: complement(24250..24465)
location: region:24250-24465:-1
so has part: feature:24250-24465:-1:exon
subclass of: SO_0000010

position:24250:-1
position: 24250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24465:-1
position: 24465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24250-24465:-1:exon

SGP1_RS31265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS31265
old locus tag: SGP2_0023
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSLLLQRVECMKEYSRLAGLAEEREARGEWRQVAALWERAAEAGRQVNHGDKAIARLAACRRRIENQENDD
SIO_010081: SGP1_RS31265
subclass of: SO_0000673
so part of: SGP1_RS31265
location: complement(24250..24465)
location: region:24250-24465:-1
so has part: feature:24250-24465:-1:exon

WP_011412280.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24250-24465:-1:exon

SGP1_RS22685
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22685
pseudo: true
so part of: sequence
location: complement(24888..26077)
location: region:24888-26077:-1
so has part: feature:24888-26077:-1:exon
subclass of: SO_0000010

position:24888:-1
position: 24888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26077:-1
position: 26077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24888-26077:-1:exon

SGP1_RS22685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22685
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611134.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS3 family transposase
SIO_010081: SGP1_RS22685
subclass of: SO_0000673
so part of: SGP1_RS22685
location: complement(24888..26077)
location: region:24888-26077:-1
so has part: feature:24888-26077:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24888-26077:-1:exon