Sodalis glossinidius str. 'morsitans' plasmid pSG1, complete sequence.
type: Entry
definition: Sodalis glossinidius str. 'morsitans' plasmid pSG1, complete sequence.
sequence version: NC_007713.1
sequence date: 2023-04-17
sequence: sequence
division: CON
label: NC_007713.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00061079
keyword: RefSeq
source: Sodalis glossinidius str. 'morsitans'
organism: Sodalis glossinidius str. 'morsitans'
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Bruguierivoracaceae; Sodalis.
reference: 1
references: 16365377
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP008233.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/17/2023 01:23:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,017\nCDSs (total) :: 4,918\nGenes (coding) :: 3,718\nCDSs (with protein) :: 3,718\nGenes (RNA) :: 99\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 71\nncRNAs :: 6\nPseudo Genes (total) :: 1,200\nCDSs (without protein) :: 1,200\nPseudo Genes (ambiguous residues) :: 0 of 1,200\nPseudo Genes (frameshifted) :: 890 of 1,200\nPseudo Genes (incomplete) :: 445 of 1,200\nPseudo Genes (internal stop) :: 423 of 1,200\nPseudo Genes (multiple problems) :: 498 of 1,200\nPseudo Genes (short protein) :: 1 of 1,200\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 83306
topology: circular
so has quality: SO_0000988
location: 1..83306
location: region:1-83306:1
RO_0002162: 343509

NC_007713
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00061079
type: BioSample
SIO_000068: biosample

1
title: Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host
author: Toh, H.
author: Weiss, B.L.
author: Perkin, S.A.
author: Yamashita, A.
author: Oshima, K.
author: Hattori, M.
author: Aksoy, S.
journal: Genome Res
volume: 16
issue: 2
pages: 149-156
year: 2006
pubmed: 16365377

16365377
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Hattori, M.
author: Yamashita, A.
author: Toh, H.
author: Oshima, K.
author: Shiba, T.
journal: Submitted (14-DEC-2004) Contact:Masahira Hattori Graduate School of Frontier Sciences, University of Tokyo; 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8561, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:83306:1
position: 83306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-83306:1:source
so part of: sequence
organism: Sodalis glossinidius str. 'morsitans'
mol type: genomic DNA
strain: morsitans
isolation source: isolated from secondary symbiont of Glossina morsitans morsitans
host: Glossina morsitans morsitans
plasmid: pSG1

343509
type: Taxonomy
SIO_000068: taxonomy

SGP1_RS25235
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS25235
so part of: sequence
location: join(83247..83306,1..153)
location: region:1-83306:1
so has part: feature:83247-83306:1:exon
so has part: feature:1-153:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:83247-83306:1:exon

position:83247:1
position: 83247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-153:1:exon

position:153:1
position: 153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SGP1_RS25235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS25235
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQELIMKDLNRYTAVVDSDEFLSVRNFASMSLNYGDYHCKTEKAEKLMKKREKYFSKRYLSRLGVEKPVM
SIO_010081: SGP1_RS25235
subclass of: SO_0000673
so part of: SGP1_RS25235
location: join(83247..83306,1..153)
location: region:1-83306:1
so has part: feature:83247-83306:1:exon
so has part: feature:1-153:1:exon

WP_050747958.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:83247-83306:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-153:1:exon

SGP1_RS22070
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22070
pseudo: true
so part of: sequence
location: 564..2231
location: region:564-2231:1
so has part: feature:564-2231:1:exon
subclass of: SO_0000010

position:564:1
position: 564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2231:1
position: 2231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:564-2231:1:exon

SGP1_RS22070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016247728.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO process: GO:0006265 - DNA topological change [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DNA topoisomerase
SIO_010081: SGP1_RS22070
subclass of: SO_0000673
so part of: SGP1_RS22070
location: 564..2231
location: region:564-2231:1
so has part: feature:564-2231:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:564-2231:1:exon

SGP1_RS22075
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22075
old locus tag: SGP1_0001
so part of: sequence
location: 2282..2494
location: region:2282-2494:1
so has part: feature:2282-2494:1:exon
subclass of: SO_0000010

position:2282:1
position: 2282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2494:1
position: 2494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2282-2494:1:exon

SGP1_RS22075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22075
old locus tag: SGP1_0001
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000453335.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Hha/YmoA family nucleoid-associated regulatory protein
translation: MQHKNKIEWLLQFRRYSTKETVEKMAERIAERLDGNEYLYFQSAVDHRLAELTMNRLYDKIPAKVWHYVK
SIO_010081: SGP1_RS22075
subclass of: SO_0000673
so part of: SGP1_RS22075
location: 2282..2494
location: region:2282-2494:1
so has part: feature:2282-2494:1:exon

WP_011412238.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2282-2494:1:exon

SGP1_RS22080
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22080
old locus tag: SGP1_0002
so part of: sequence
location: 2509..2943
location: region:2509-2943:1
so has part: feature:2509-2943:1:exon
subclass of: SO_0000010

position:2509:1
position: 2509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2943:1
position: 2943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2509-2943:1:exon

SGP1_RS22080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22080
old locus tag: SGP1_0002
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001293125.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: H-NS family nucleoid-associated regulatory protein
translation: MSEKESYGEIRRVLSNIRSTRAFARETNFELLKEMHEKLGAVIEERRTDAEKEAAERALREEKRKEILQLIEGEGFTAEELLGDDVNISKKRSKKPKAPAKYEFVENGETKTWTGKGRKPKPIAEALSAGRTLEEFLINKSEIQ
SIO_010081: SGP1_RS22080
subclass of: SO_0000673
so part of: SGP1_RS22080
location: 2509..2943
location: region:2509-2943:1
so has part: feature:2509-2943:1:exon

WP_011412239.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2509-2943:1:exon

SGP1_RS22085
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
gene: stbC
locus tag: SGP1_RS22085
so part of: sequence
location: complement(3104..3412)
location: region:3104-3412:-1
so has part: feature:3104-3412:-1:exon
subclass of: SO_0000010

position:3104:-1
position: 3104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3412:-1
position: 3412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3104-3412:-1:exon

SGP1_RS22085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
gene: stbC
locus tag: SGP1_RS22085
function: putative stable plasmid inheritance protein
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873781.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid stabilization protein StbC
translation: MDKQPDKLEVLMDWFLGDAKEINETQKKMLGKQTALLERVDELNKCIDSKIEKSIRDVIIRVSDSCNETKSKIKRRRFITIILLCSVLSALIGVELTLFIIK
SIO_010081: SGP1_RS22085
subclass of: SO_0000673
so part of: SGP1_RS22085
location: complement(3104..3412)
location: region:3104-3412:-1
so has part: feature:3104-3412:-1:exon

WP_011279205.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3104-3412:-1:exon

SGP1_RS22090
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
gene: stbB
locus tag: SGP1_RS22090
old locus tag: SGP1_0003
so part of: sequence
location: complement(3414..4130)
location: region:3414-4130:-1
so has part: feature:3414-4130:-1:exon
subclass of: SO_0000010

position:3414:-1
position: 3414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4130:-1
position: 4130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3414-4130:-1:exon

SGP1_RS22090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
gene: stbB
locus tag: SGP1_RS22090
old locus tag: SGP1_0003
function: putative stable plasmid inheritance protein
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011279206.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: StbB family protein
translation: MKVAVINYSGSVGKTLVSTYLLAPRMKNVKFFSIETINQSATDLGIKDVVSFKGDDFSKLIEDIFFEDSAIIDIGASNVEQFLMSMSRFDGGANEFDLYFIPVTKEDKAIKESMKTAHALNKVGVEREKIVFVPNRITPGEDVEKVLEAVFSFVKETKIGKIDKNSVIYDSEVYEYLAHHKISFESLTEEDAEEFKVRAKQSNDVDERRKMARRYTYMKQAIPVKNNLDKTYSLLIGE
SIO_010081: SGP1_RS22090
subclass of: SO_0000673
so part of: SGP1_RS22090
location: complement(3414..4130)
location: region:3414-4130:-1
so has part: feature:3414-4130:-1:exon

WP_011279206.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3414-4130:-1:exon

SGP1_RS22095
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
gene: stbA
locus tag: SGP1_RS22095
so part of: sequence
location: complement(4139..4519)
location: region:4139-4519:-1
so has part: feature:4139-4519:-1:exon
subclass of: SO_0000010

position:4139:-1
position: 4139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4519:-1
position: 4519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4139-4519:-1:exon

SGP1_RS22095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
gene: stbA
locus tag: SGP1_RS22095
function: prevention of the induction of SOS-responses
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020323173.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid stabilization protein StbA
translation: MKPKSIRAAIQMMLQEVEEMLSLGVSREDVFKVVSERFNIANVNVRSFDTALYRARVKRSKLEKSTNLSYRKDRVEISKDPLLSKKRQTEEKKEERSNIPNKGIIGKEFFDEINNSFDPNKFIDKY
SIO_010081: SGP1_RS22095
subclass of: SO_0000673
so part of: SGP1_RS22095
location: complement(4139..4519)
location: region:4139-4519:-1
so has part: feature:4139-4519:-1:exon

WP_011279207.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4139-4519:-1:exon

SGP1_RS28660
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS28660
so part of: sequence
location: complement(4777..5025)
location: region:4777-5025:-1
so has part: feature:4777-5025:-1:exon
subclass of: SO_0000010

position:4777:-1
position: 4777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5025:-1
position: 5025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4777-5025:-1:exon

SGP1_RS28660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS28660
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001180119.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNSGANEVKPSPEDVKQMRIAAGLTLKECTNIFGISLRIWQKKEESNNVSSRSITKGEYLYLLLLAGKHPEFTLNKRTDIEE
SIO_010081: SGP1_RS28660
subclass of: SO_0000673
so part of: SGP1_RS28660
location: complement(4777..5025)
location: region:4777-5025:-1
so has part: feature:4777-5025:-1:exon

WP_011279208.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4777-5025:-1:exon

SGP1_RS22100
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22100
so part of: sequence
location: complement(5838..6026)
location: region:5838-6026:-1
so has part: feature:5838-6026:-1:exon
subclass of: SO_0000010

position:5838:-1
position: 5838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6026:-1
position: 6026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5838-6026:-1:exon

SGP1_RS22100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22100
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIYGSVDYYHYSYGKLKKCSVSLTRNASAIAKDIKRKILITAVDEIRKANEYHQKEQEKKEF
SIO_010081: SGP1_RS22100
subclass of: SO_0000673
so part of: SGP1_RS22100
location: complement(5838..6026)
location: region:5838-6026:-1
so has part: feature:5838-6026:-1:exon

WP_041867723.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5838-6026:-1:exon

SGP1_RS31615
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS31615
pseudo: true
so part of: sequence
location: complement(6273..6775)
location: region:6273-6775:-1
so has part: feature:6273-6775:-1:exon
subclass of: SO_0000010

position:6273:-1
position: 6273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6775:-1
position: 6775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6273-6775:-1:exon

SGP1_RS31615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS31615
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001025391.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: molecular chaperone DnaJ
SIO_010081: SGP1_RS31615
subclass of: SO_0000673
so part of: SGP1_RS31615
location: complement(6273..6775)
location: region:6273-6775:-1
so has part: feature:6273-6775:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6273-6775:-1:exon

SGP1_RS22105
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22105
pseudo: true
so part of: sequence
location: 7705..8637
location: region:7705-8637:1
so has part: feature:7705-8637:1:exon
subclass of: SO_0000010

position:7705:1
position: 7705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8637:1
position: 8637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7705-8637:1:exon

SGP1_RS22105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22105
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006708696.1
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: replication initiator protein A
SIO_010081: SGP1_RS22105
subclass of: SO_0000673
so part of: SGP1_RS22105
location: 7705..8637
location: region:7705-8637:1
so has part: feature:7705-8637:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7705-8637:1:exon

SGP1_RS22110
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22110
so part of: sequence
location: 8634..8951
location: region:8634-8951:1
so has part: feature:8634-8951:1:exon
subclass of: SO_0000010

position:8634:1
position: 8634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8951:1
position: 8951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8634-8951:1:exon

SGP1_RS22110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22110
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNNIYQFPQGAERQVVKKSINTVKRKRKLGKVRRTIMTGIRWLWFALRITLANMLHIATVTFFAFLHAFKGFIFVIIGLGCIIILIIILRHQIIIPFPFLWRFG
SIO_010081: SGP1_RS22110
subclass of: SO_0000673
so part of: SGP1_RS22110
location: 8634..8951
location: region:8634-8951:1
so has part: feature:8634-8951:1:exon

WP_242451006.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8634-8951:1:exon

SGP1_RS22115
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22115
so part of: sequence
location: 9075..9665
location: region:9075-9665:1
so has part: feature:9075-9665:1:exon
subclass of: SO_0000010

position:9075:1
position: 9075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9665:1
position: 9665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9075-9665:1:exon

SGP1_RS22115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22115
function: putative endonuclease
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014888259.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phospholipase D family protein
translation: MSKPVKVTAAIVLFLLTFTSPLSASTIIQDMEVGFSPGRTAQQIVMTAIEEAETSIDIAAYSFTSKPITLALVDAQNRGVNVRVVADKKSNGGKYTAVTYLANHRVPVRLNDKYAIMHNKFMIVDGRSVETGSFNYTQSAASRNAENVIYLRNRPDIAEKYTREFNRLWSEAADTKATYQHTMQDRRSGILGGKNG
SIO_010081: SGP1_RS22115
subclass of: SO_0000673
so part of: SGP1_RS22115
location: 9075..9665
location: region:9075-9665:1
so has part: feature:9075-9665:1:exon

WP_011279209.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9075-9665:1:exon

SGP1_RS22120
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22120
old locus tag: SGP1_0005
so part of: sequence
location: 9771..10040
location: region:9771-10040:1
so has part: feature:9771-10040:1:exon
subclass of: SO_0000010

position:9771:1
position: 9771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10040:1
position: 10040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9771-10040:1:exon

SGP1_RS22120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22120
old locus tag: SGP1_0005
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKMLRFRVTDEQYQELKTISSEKGCRSANAFLKDIALAILSKDKKIDSNKNDLDRDYLSVNMRFNVDEVTYDKISERAKKHGWTLSKEI
SIO_010081: SGP1_RS22120
subclass of: SO_0000673
so part of: SGP1_RS22120
location: 9771..10040
location: region:9771-10040:1
so has part: feature:9771-10040:1:exon

WP_011412241.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9771-10040:1:exon

SGP1_RS22125
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22125
old locus tag: SGP1_0006
so part of: sequence
location: 10077..10301
location: region:10077-10301:1
so has part: feature:10077-10301:1:exon
subclass of: SO_0000010

position:10077:1
position: 10077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10301:1
position: 10301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10077-10301:1:exon

SGP1_RS22125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22125
old locus tag: SGP1_0006
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLENEIRELRKTRNKIVRIGQNIYYLIAQRQLLPVNDKNMWADIKKLSALIEDVKRKINYLADARENILQVKRG
SIO_010081: SGP1_RS22125
subclass of: SO_0000673
so part of: SGP1_RS22125
location: 10077..10301
location: region:10077-10301:1
so has part: feature:10077-10301:1:exon

WP_011412242.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10077-10301:1:exon

SGP1_RS34680
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34680
so part of: sequence
location: 10301..10762
location: region:10301-10762:1
so has part: feature:10301-10762:1:exon
subclass of: SO_0000010

position:10762:1
position: 10762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10301-10762:1:exon

SGP1_RS34680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34680
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMGVKVKKEDRIRRVSEQRREKIRRFPEAHKVRHGGKNYAKGVRDRAFKNGNSCEVLVRITGSGRTPRGVKNEINYIAREGELTLRDSDGKEYFIKEREERKQSYSFMTDREDKQIHKDESAPKLVHNMVFSSPNVVSVSEADAFKAVETTLK
SIO_010081: SGP1_RS34680
subclass of: SO_0000673
so part of: SGP1_RS34680
location: 10301..10762
location: region:10301-10762:1
so has part: feature:10301-10762:1:exon

WP_242451007.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10301-10762:1:exon

SGP1_RS34685
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34685
so part of: sequence
location: 10787..11122
location: region:10787-11122:1
so has part: feature:10787-11122:1:exon
subclass of: SO_0000010

position:10787:1
position: 10787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11122:1
position: 11122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10787-11122:1:exon

SGP1_RS34685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34685
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAYHKDTYSHHVHVLLRIPDNYGKRINIRKQDLRELREKFAGPLQKMGYSVTCTHKYQFGLKSELKREHDRQRGLYEVVKFGRASYRFNPKNGNQNYITLRTLKNKKEVTY
SIO_010081: SGP1_RS34685
subclass of: SO_0000673
so part of: SGP1_RS34685
location: 10787..11122
location: region:10787-11122:1
so has part: feature:10787-11122:1:exon

WP_243466336.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10787-11122:1:exon

SGP1_RS34690
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34690
so part of: sequence
location: 11126..11464
location: region:11126-11464:1
so has part: feature:11126-11464:1:exon
subclass of: SO_0000010

position:11126:1
position: 11126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11464:1
position: 11464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11126-11464:1:exon

SGP1_RS34690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34690
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNLEEEIEREQIKHGSVISFKKEEATAVKVPKLDRQGKQVGWTETHRNNWRIENQGLMGIKTKPFPKEIKLDSPEQLMKHKRSMVVFKQSKAAMLALKEQLKKGIKIGSIKF
SIO_010081: SGP1_RS34690
subclass of: SO_0000673
so part of: SGP1_RS34690
location: 11126..11464
location: region:11126-11464:1
so has part: feature:11126-11464:1:exon

WP_243466337.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11126-11464:1:exon

SGP1_RS22135
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22135
pseudo: true
so part of: sequence
location: 11510..12455
location: region:11510-12455:1
so has part: feature:11510-12455:1:exon
subclass of: SO_0000010

position:11510:1
position: 11510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12455:1
position: 12455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11510-12455:1:exon

SGP1_RS22135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22135
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015981317.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Rpn family recombination-promoting nuclease/putative transposase
SIO_010081: SGP1_RS22135
subclass of: SO_0000673
so part of: SGP1_RS22135
location: 11510..12455
location: region:11510-12455:1
so has part: feature:11510-12455:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11510-12455:1:exon

SGP1_RS22140
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22140
so part of: sequence
location: 12459..12971
location: region:12459-12971:1
so has part: feature:12459-12971:1:exon
subclass of: SO_0000010

position:12459:1
position: 12459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12971:1
position: 12971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12459-12971:1:exon

SGP1_RS22140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22140
EC number: 3.2.2.-
function: putative DNA-3-methyladenine glycosylase
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016857296.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-3-methyladenine glycosylase
translation: MLSNTILSRSFYKRDTLCVAKDLLGKVLKFADYYGVINEVEAYIGQDDPACHAARGYTPRTAAMFGAAGFSYVYLIYGMYHCLNIVTEREGFPAAVLIRGIDLYKPTVLSLNGPGKLCKKLNITKNNNKIDLTQSHGFCVYNTTARPEYMATPRIGIKVGTDKLWRFKSM
SIO_010081: SGP1_RS22140
subclass of: SO_0000673
so part of: SGP1_RS22140
location: 12459..12971
location: region:12459-12971:1
so has part: feature:12459-12971:1:exon

WP_011279210.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12459-12971:1:exon

SGP1_RS22145
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22145
old locus tag: SGP1_0007
so part of: sequence
location: 13319..13930
location: region:13319-13930:1
so has part: feature:13319-13930:1:exon
subclass of: SO_0000010

position:13319:1
position: 13319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13930:1
position: 13930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13319-13930:1:exon

SGP1_RS22145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22145
old locus tag: SGP1_0007
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016857298.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LuxR C-terminal-related transcriptional regulator
translation: MNIPIKQFCQSLTIPCGFTDAQSQDYTNAAMTDILGMTVESSQVLDVFHTHENHKKLPLSLLSTLPGGYKEPPQPWRFDFFPRFDEKDVYEGAFFYAQPFLFLSLLEYIEGELPYPVVLSQPNDMFTDREWDVLFLSLQRLSCKEIAKWLDIAVKTAEVHLSNTYNKDDVHHANQLRLFCREKGINRYLPPKFLPSGSHLISV
SIO_010081: SGP1_RS22145
subclass of: SO_0000673
so part of: SGP1_RS22145
location: 13319..13930
location: region:13319-13930:1
so has part: feature:13319-13930:1:exon

WP_011412243.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13319-13930:1:exon

SGP1_RS28670
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS28670
so part of: sequence
location: 13988..14254
location: region:13988-14254:1
so has part: feature:13988-14254:1:exon
subclass of: SO_0000010

position:13988:1
position: 13988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14254:1
position: 14254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13988-14254:1:exon

SGP1_RS28670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS28670
inference: COORDINATES: protein motif:HMM:NF012422.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MKYFRIEDFTSYSTLFPKLSRREIEILSLFRVSLTRSEIALKLNVSVRTIDTHLNSAMHKYELNSSSKLKSLFNFIIQDTFINLIAST
SIO_010081: SGP1_RS28670
subclass of: SO_0000673
so part of: SGP1_RS28670
location: 13988..14254
location: region:13988-14254:1
so has part: feature:13988-14254:1:exon

WP_083765147.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13988-14254:1:exon

SGP1_RS22150
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22150
so part of: sequence
location: 14879..15109
location: region:14879-15109:1
so has part: feature:14879-15109:1:exon
subclass of: SO_0000010

position:14879:1
position: 14879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15109:1
position: 15109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14879-15109:1:exon

SGP1_RS22150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22150
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006708968.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFKQLSRPGKNIYVGAVLRDRLDKIVLDIGHYIGRPVTISEFIHYVVERHGDEAKDNLKRILGTEEERTLPDKKRR
SIO_010081: SGP1_RS22150
subclass of: SO_0000673
so part of: SGP1_RS22150
location: 14879..15109
location: region:14879-15109:1
so has part: feature:14879-15109:1:exon

WP_041867724.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14879-15109:1:exon

SGP1_RS28675
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS28675
pseudo: true
so part of: sequence
location: 15114..15703
location: region:15114-15703:1
so has part: feature:15114-15703:1:exon
subclass of: SO_0000010

position:15114:1
position: 15114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15703:1
position: 15703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15114-15703:1:exon

SGP1_RS28675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS28675
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000953539.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: lytic transglycosylase domain-containing protein
SIO_010081: SGP1_RS28675
subclass of: SO_0000673
so part of: SGP1_RS28675
location: 15114..15703
location: region:15114-15703:1
so has part: feature:15114-15703:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15114-15703:1:exon

SGP1_RS34695
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34695
so part of: sequence
location: 15866..15997
location: region:15866-15997:1
so has part: feature:15866-15997:1:exon
subclass of: SO_0000010

position:15866:1
position: 15866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15997:1
position: 15997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15866-15997:1:exon

SGP1_RS34695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34695
inference: COORDINATES: protein motif:HMM:NF016820.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MALAALIIGFRVMFRGETIRDCWGIILGASLIASAAEIGKWLA
SIO_010081: SGP1_RS34695
subclass of: SO_0000673
so part of: SGP1_RS34695
location: 15866..15997
location: region:15866-15997:1
so has part: feature:15866-15997:1:exon

WP_242451022.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15866-15997:1:exon

SGP1_RS28680
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS28680
so part of: sequence
location: 16012..16377
location: region:16012-16377:1
so has part: feature:16012-16377:1:exon
subclass of: SO_0000010

position:16012:1
position: 16012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16377:1
position: 16377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16012-16377:1:exon

SGP1_RS28680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS28680
inference: COORDINATES: protein motif:HMM:NF016957.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VirB3 family type IV secretion system protein
translation: MSTIYKALTRQPVLPGIGVPIVPFVVVEGALISLSANISWFFLIVAFAAWYIMKLMTQEDEAIFHLMRLKMRTLGIYVINRFYGTTVFSASQYDTVDIKEISDCMKLNQRLQLENLIPHIL
SIO_010081: SGP1_RS28680
subclass of: SO_0000673
so part of: SGP1_RS28680
location: 16012..16377
location: region:16012-16377:1
so has part: feature:16012-16377:1:exon

WP_050747942.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16012-16377:1:exon

SGP1_RS30430
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS30430
so part of: sequence
location: 16374..16952
location: region:16374-16952:1
so has part: feature:16374-16952:1:exon
subclass of: SO_0000010

position:16374:1
position: 16374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16952:1
position: 16952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16374-16952:1:exon

SGP1_RS30430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS30430
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKTRENDELATWEVIGVPFECEDDNDLAIINSQLNTMIRAWEGKPVTFYTHRIREKFYDHLDTPIGNPVADKISKKYYEGIKKSQLYQNRLFFTVCYAPFGKEHKMQHKMRNIYDKRKAIAETLPEMREIVSKISASLTRFHAQPLGIFENKKGVYSSQLSFYQYLLSGHWQEVRLSSTPLYEVLGGVDIFL
SIO_010081: SGP1_RS30430
subclass of: SO_0000673
so part of: SGP1_RS30430
location: 16374..16952
location: region:16374-16952:1
so has part: feature:16374-16952:1:exon

WP_050747943.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16374-16952:1:exon

SGP1_RS26020
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS26020
so part of: sequence
location: 17064..18542
location: region:17064-18542:1
so has part: feature:17064-18542:1:exon
subclass of: SO_0000010

position:17064:1
position: 17064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18542:1
position: 18542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17064-18542:1:exon

SGP1_RS26020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS26020
inference: COORDINATES: protein motif:HMM:NF015118.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSITYVMTTSFTALVKQEAQAAIKDKIRKLKSAGDEVASQLLDLEVAKDLHGSGVIAFGKYHYSLVIYADSLDELTAHTNQVITELEDLGLIVALSMLSLGAAYLAQLPGVYHLHPRLALMSSQNFVDFESFHNFFSGKSKGVPWGEPLVQLKTPAGGKYDLNLHNTLMGVNELGKKTLGHTDVLGQAGSGKTVLLMFMMVMMQKWRNTALFPINSPVKQLTTVFFDKDRATEPGIRALGGQYFSIKSGEMTEFAPFMLNTTKCNVIFVKQLMKIICTLNGNTLTTREELRLNTGVERVMALPRDVRRFGVTALINHISEPDNREARENGVKIRLARWAQGGDLAWVFDNDNDNFDLSQYDNFGIDGTEFLDNPDVCPAIAFYLLYRVTSLLDGCRLVISMDEFWQWIGNPAFADFVYNRLKTMRKLNGIIIPATQSPEEILKSSVSGAMREQCTTHIYLANPKADYEQYVNRLKVPERYFNIIKNLDPLSR
SIO_010081: SGP1_RS26020
subclass of: SO_0000673
so part of: SGP1_RS26020
location: 17064..18542
location: region:17064-18542:1
so has part: feature:17064-18542:1:exon

WP_243466340.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17064-18542:1:exon

SGP1_RS31055
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS31055
so part of: sequence
location: 18579..18743
location: region:18579-18743:1
so has part: feature:18579-18743:1:exon
subclass of: SO_0000010

position:18579:1
position: 18579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18743:1
position: 18743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18579-18743:1:exon

SGP1_RS31055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS31055
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNDFAALVTLDLSGLGVTTKLLSTDKDDLEVFDTLFQDGMRPDEWIDAYLKLVA
SIO_010081: SGP1_RS31055
subclass of: SO_0000673
so part of: SGP1_RS31055
location: 18579..18743
location: region:18579-18743:1
so has part: feature:18579-18743:1:exon

WP_158302480.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18579-18743:1:exon

SGP1_RS22170
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22170
pseudo: true
so part of: sequence
location: 18832..19489
location: region:18832-19489:1
so has part: feature:18832-19489:1:exon
subclass of: SO_0000010

position:18832:1
position: 18832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19489:1
position: 19489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18832-19489:1:exon

SGP1_RS22170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011191403.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type IV secretion system protein
SIO_010081: SGP1_RS22170
subclass of: SO_0000673
so part of: SGP1_RS22170
location: 18832..19489
location: region:18832-19489:1
so has part: feature:18832-19489:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18832-19489:1:exon

SGP1_RS22175
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22175
so part of: sequence
location: 19497..19745
location: region:19497-19745:1
so has part: feature:19497-19745:1:exon
subclass of: SO_0000010

position:19497:1
position: 19497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19745:1
position: 19745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19497-19745:1:exon

SGP1_RS22175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22175
function: putative surface exclusion lipoprotein
inference: COORDINATES: protein motif:HMM:NF033894.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: EexN family lipoprotein
translation: MMKKIGFMTVMIGCIILLGCKEEVKSEEWYNQHPDETYNVYSKYLKDRESSQNFEKARRAKNNFVNLGTEEQKTRFSELNIK
SIO_010081: SGP1_RS22175
subclass of: SO_0000673
so part of: SGP1_RS22175
location: 19497..19745
location: region:19497-19745:1
so has part: feature:19497-19745:1:exon

WP_011279214.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19497-19745:1:exon

SGP1_RS25270
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS25270
pseudo: true
so part of: sequence
location: 19874..20932
location: region:19874-20932:1
so has part: feature:19874-20932:1:exon
subclass of: SO_0000010

position:19874:1
position: 19874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20932:1
position: 20932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19874-20932:1:exon

SGP1_RS25270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS25270
inference: COORDINATES: protein motif:HMM:NF016491.2
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type IV secretion system protein
SIO_010081: SGP1_RS25270
subclass of: SO_0000673
so part of: SGP1_RS25270
location: 19874..20932
location: region:19874-20932:1
so has part: feature:19874-20932:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19874-20932:1:exon

SGP1_RS34700
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34700
so part of: sequence
location: 21147..21401
location: region:21147-21401:1
so has part: feature:21147-21401:1:exon
subclass of: SO_0000010

position:21147:1
position: 21147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21401:1
position: 21401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21147-21401:1:exon

SGP1_RS34700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34700
function: putative pilus assembly protein
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: TriG protein
translation: MMFTKKAAYLKTAQEFELKWRQRDKRDKTIVFIIASIGTAFWLLSLIAIIILLPLKQTNTELYIADKLTGKVFYPAICALAGRL
SIO_010081: SGP1_RS34700
subclass of: SO_0000673
so part of: SGP1_RS34700
location: 21147..21401
location: region:21147-21401:1
so has part: feature:21147-21401:1:exon

WP_011279216.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21147-21401:1:exon

SGP1_RS22190
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22190
pseudo: true
so part of: sequence
location: 21944..22579
location: region:21944-22579:1
so has part: feature:21944-22579:1:exon
subclass of: SO_0000010

position:21944:1
position: 21944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22579:1
position: 22579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21944-22579:1:exon

SGP1_RS22190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22190
inference: COORDINATES: protein motif:HMM:NF015487.2
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: TrbG/VirB9 family P-type conjugative transfer protein
SIO_010081: SGP1_RS22190
subclass of: SO_0000673
so part of: SGP1_RS22190
location: 21944..22579
location: region:21944-22579:1
so has part: feature:21944-22579:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21944-22579:1:exon

SGP1_RS31060
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS31060
so part of: sequence
location: 22576..22725
location: region:22576-22725:1
so has part: feature:22576-22725:1:exon
subclass of: SO_0000010

position:22576:1
position: 22576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22725:1
position: 22725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22576-22725:1:exon

SGP1_RS31060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS31060
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNHKEKTTDDIEREARKHLAGEAETSPAEIANDAVDAKPEEDGTTTEKP
SIO_010081: SGP1_RS31060
subclass of: SO_0000673
so part of: SGP1_RS31060
location: 22576..22725
location: region:22576-22725:1
so has part: feature:22576-22725:1:exon

WP_158302481.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22576-22725:1:exon

SGP1_RS22195
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
gene: virB10
locus tag: SGP1_RS22195
pseudo: true
so part of: sequence
location: <22741..23949
location: region:22741-23949:1
so has part: feature:22741-23949:1:exon
subclass of: SO_0000010

position:22741:1
position: 22741
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:23949:1
position: 23949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22741-23949:1:exon

SGP1_RS22195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
gene: virB10
locus tag: SGP1_RS22195
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873770.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: VirB10/TraB/TrbI family type IV secretion system protein
SIO_010081: SGP1_RS22195
subclass of: SO_0000673
so part of: SGP1_RS22195
location: <22741..23949
location: region:22741-23949:1
so has part: feature:22741-23949:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22741-23949:1:exon

SGP1_RS22200
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
gene: virB11
locus tag: SGP1_RS22200
old locus tag: SGP1_0008
so part of: sequence
location: 23946..24893
location: region:23946-24893:1
so has part: feature:23946-24893:1:exon
subclass of: SO_0000010

position:23946:1
position: 23946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24893:1
position: 24893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23946-24893:1:exon

SGP1_RS22200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
gene: virB11
locus tag: SGP1_RS22200
old locus tag: SGP1_0008
function: putative ATP-binding protein
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003036362.1
GO component: GO:0043684 - type IV secretion system complex [Evidence IEA]
GO process: GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type DNA transfer ATPase VirB11
translation: MNDTQNPTLMYYRDSLFGALLATEGLTELAVNRPNQIFTKVNGEWQEHNATISYEECMTFAAVLANHNDDHIDDLKPILSATLESGERCQIVIPPSCERGTVSITIRKPPYLQISHQSWIESGFYDQLTGQEKTEIHDDVLIQLFKDNAFPGFMEKAMEFSKTTVFGGGTGSGKTTYEKTLFNCIPSHLRLVSIEDNPEVKFYSHRNHVHLFYNAEAPEGAIVTPASLLRANFRMNPDRILLTEVRGPETWDFMKAQSSGHEGGVTSLHAPTPEAVIDGIIERCYQNPECCNLPYNVMLRKVLQHRCDRLNDGTG
SIO_010081: SGP1_RS22200
subclass of: SO_0000673
so part of: SGP1_RS22200
location: 23946..24893
location: region:23946-24893:1
so has part: feature:23946-24893:1:exon

WP_011279218.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23946-24893:1:exon

SGP1_RS22205
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22205
old locus tag: SGP1_0009
so part of: sequence
location: 24961..25425
location: region:24961-25425:1
so has part: feature:24961-25425:1:exon
subclass of: SO_0000010

position:24961:1
position: 24961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25425:1
position: 25425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24961-25425:1:exon

SGP1_RS22205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22205
old locus tag: SGP1_0009
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDKCKLTPGQWGFIGLLVCLLTVGIASVLVYPMNGVGLRRFLHTYQFSMLERILFDSNIRDDIRWNAVLSLLYGFLASVVIAGSLIIKTAMQKPSLYGDAKFASDADIRRSKAVTWGDESKGGVIIARTPLNAKRHCILMPPTLWTGYARCHRS
SIO_010081: SGP1_RS22205
subclass of: SO_0000673
so part of: SGP1_RS22205
location: 24961..25425
location: region:24961-25425:1
so has part: feature:24961-25425:1:exon

WP_011412244.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24961-25425:1:exon

SGP1_RS25275
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS25275
old locus tag: SGP1_0010
so part of: sequence
location: complement(25572..26675)
location: region:25572-26675:-1
so has part: feature:25572-26675:-1:exon
subclass of: SO_0000010

position:25572:-1
position: 25572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26675:-1
position: 26675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25572-26675:-1:exon

SGP1_RS25275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS25275
old locus tag: SGP1_0010
inference: COORDINATES: protein motif:HMM:NF021021.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: M64 family metallopeptidase
translation: MERYFISSYLKIKEKNIFEAFNPDSGDIDRVKSIDVSSIDAEVIIPYHENLESIKFEEVSDDVLYRKRKPYVATFKIHDLLLRNKDDFISGSRCFNHEIISRQGEVQKNKMIIAIMGDGYSFNDMEQWKKDANIVMSGFLSDPLMNEFKDCFEFMRIDVISKDSGISITGQQKKDTALETVLGCYDLDRLLCVNIKLVKKFANESLGFGGYDQVLVIGNTKEYGGAGYDGIGTLTMHKQSVELALHEFGHSAYHLADEYDYGNCVIEGDENEKANVTKETDRNKIKWRHLIKPTTQIPTLNTENGIIGLFEGAAYCKKGKYRPVFSSKMKNLGASWHAVNEEHIKKIMMHYNYRGDPTKKSKYFKIN
SIO_010081: SGP1_RS25275
subclass of: SO_0000673
so part of: SGP1_RS25275
location: complement(25572..26675)
location: region:25572-26675:-1
so has part: feature:25572-26675:-1:exon

WP_011412245.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25572-26675:-1:exon

SGP1_RS22215
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22215
so part of: sequence
location: 27157..27567
location: region:27157-27567:1
so has part: feature:27157-27567:1:exon
subclass of: SO_0000010

position:27157:1
position: 27157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27567:1
position: 27567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27157-27567:1:exon

SGP1_RS22215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22215
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLSFITTTITRYINPRNTLSIKNDNDVHVSALWENIKHLFHHDKINDAQRLVYDLCYPNDNDASFKKSMKCFLKLRRMARDEYKTQFVYRKDTDESKKICELIDNKGYPLITIAKGINDSDSLYKYTIAGIESTFL
SIO_010081: SGP1_RS22215
subclass of: SO_0000673
so part of: SGP1_RS22215
location: 27157..27567
location: region:27157-27567:1
so has part: feature:27157-27567:1:exon

WP_011279220.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27157-27567:1:exon

SGP1_RS30435
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS30435
so part of: sequence
location: 27809..28057
location: region:27809-28057:1
so has part: feature:27809-28057:1:exon
subclass of: SO_0000010

position:27809:1
position: 27809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28057:1
position: 28057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27809-28057:1:exon

SGP1_RS30435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS30435
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKFIVLTVGGIFLADCSSPLPVNWSGIAIEINSTMLDWKENNVVIPSPVITGQKRFVILMEKKGAIFPMITLLSLMPIRLWY
SIO_010081: SGP1_RS30435
subclass of: SO_0000673
so part of: SGP1_RS30435
location: 27809..28057
location: region:27809-28057:1
so has part: feature:27809-28057:1:exon

WP_148203690.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27809-28057:1:exon

SGP1_RS22220
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22220
old locus tag: SGP1_0011
so part of: sequence
location: 27973..28440
location: region:27973-28440:1
so has part: feature:27973-28440:1:exon
subclass of: SO_0000010

position:27973:1
position: 27973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28440:1
position: 28440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27973-28440:1:exon

SGP1_RS22220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22220
old locus tag: SGP1_0011
inference: COORDINATES: protein motif:HMM:NF024517.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cag pathogenicity island Cag12 family protein
translation: MCNFDGEKGSYLPDDYFAVTHANQIVVLTKTSAGYFNAKRWLRTHGAKEAIDYQVKQGCIGCSETDIYFYRINKPVDIHPLPEKKKPERMLPAKNPVQNNSSLTSKLLTVIQSPQIIGVKNNVSPAQRNKPLIHAQLMIIPQKTTMLHTDKPFLC
SIO_010081: SGP1_RS22220
subclass of: SO_0000673
so part of: SGP1_RS22220
location: 27973..28440
location: region:27973-28440:1
so has part: feature:27973-28440:1:exon

WP_148203691.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27973-28440:1:exon

SGP1_RS30440
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS30440
pseudo: true
so part of: sequence
location: 28800..>28994
location: region:28800-28994:1
so has part: feature:28800-28994:1:exon
subclass of: SO_0000010

position:28800:1
position: 28800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28994:1
position: 28994
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28800-28994:1:exon

SGP1_RS30440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS30440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003854066.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: SGP1_RS30440
subclass of: SO_0000673
so part of: SGP1_RS30440
location: 28800..>28994
location: region:28800-28994:1
so has part: feature:28800-28994:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28800-28994:1:exon

SGP1_RS22225
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
gene: repA
locus tag: SGP1_RS22225
old locus tag: SGP1_0012
so part of: sequence
location: complement(29831..30727)
location: region:29831-30727:-1
so has part: feature:29831-30727:-1:exon
subclass of: SO_0000010

position:29831:-1
position: 29831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30727:-1
position: 30727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29831-30727:-1:exon

SGP1_RS22225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
gene: repA
locus tag: SGP1_RS22225
old locus tag: SGP1_0012
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011412274.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication initiator RepA
translation: MTELFTPASQPTLNSPVRDCYVSNPYPCYRSPTPEAAKPAIVKALVKAAQNSNPARHEAWYTTPRLDVKTGLKKPFIKRMNAHRARAVNALMVAMADRLNIVSGKVEASVEQLSDWCGLSTGNGAKKSISRASRALTTLEELGAIKCERVWDDSTHSYIPKIIWVTELFFVLIDYEVGKFLSAQNQQLAWENKKLREKGEGPITLSEARRRAKEKHIKNAFDYRLKKRAFNKQRRHARKIDEMAPSQARHFIINDLVKLHSKDELEAMGHQGLRRLVDQRYHALRKLAASTAPPPDTP
SIO_010081: SGP1_RS22225
subclass of: SO_0000673
so part of: SGP1_RS22225
location: complement(29831..30727)
location: region:29831-30727:-1
so has part: feature:29831-30727:-1:exon

WP_243466338.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29831-30727:-1:exon

SGP1_RS35415
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS35415
so part of: sequence
location: complement(31037..31162)
location: region:31037-31162:-1
so has part: feature:31037-31162:-1:exon
subclass of: SO_0000010

position:31037:-1
position: 31037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31162:-1
position: 31162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31037-31162:-1:exon

SGP1_RS35415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS35415
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTHFDPHRGERRTLPAVVQFTPLQQDVIKLLALGLVAGWAG
SIO_010081: SGP1_RS35415
subclass of: SO_0000673
so part of: SGP1_RS35415
location: complement(31037..31162)
location: region:31037-31162:-1
so has part: feature:31037-31162:-1:exon

WP_279379481.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31037-31162:-1:exon

SGP1_RS22235
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22235
old locus tag: SGP1_0013
so part of: sequence
location: complement(31149..31640)
location: region:31149-31640:-1
so has part: feature:31149-31640:-1:exon
subclass of: SO_0000010

position:31149:-1
position: 31149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31640:-1
position: 31640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31149-31640:-1:exon

SGP1_RS22235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22235
old locus tag: SGP1_0013
inference: COORDINATES: protein motif:HMM:NF022337.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2726 domain-containing protein
translation: MDITLWGALIVLLAIFFALCRLMKNLIGGRSAPGGVYVRKPFLTNGERAFLSQLQEFMPDGDSVMAKVRVVDLVEVNPKQAIDATMRLRFLKPLAHWHADFVWLDPQLRVKAVIMLDEITHQFKKRLRLDKPFHQAMAQAGIRVLRVNGFTDFTEQATHCDAL
SIO_010081: SGP1_RS22235
subclass of: SO_0000673
so part of: SGP1_RS22235
location: complement(31149..31640)
location: region:31149-31640:-1
so has part: feature:31149-31640:-1:exon

WP_011279158.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31149-31640:-1:exon

SGP1_RS34705
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34705
old locus tag: SGP1_0014
so part of: sequence
location: complement(31671..32036)
location: region:31671-32036:-1
so has part: feature:31671-32036:-1:exon
subclass of: SO_0000010

position:31671:-1
position: 31671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32036:-1
position: 32036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31671-32036:-1:exon

SGP1_RS34705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34705
old locus tag: SGP1_0014
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGVTPRSAVARPPDVPLTLPETPEEKQQCALQEQIERQARQPASPRQLDGLSDDQLLRLLQAGDIRPEALAPMRQQTAAIIGQVVRESAASRSQLLPPAPGIVPDEAQRSERIKEKTLGGD
SIO_010081: SGP1_RS34705
subclass of: SO_0000673
so part of: SGP1_RS34705
location: complement(31671..32036)
location: region:31671-32036:-1
so has part: feature:31671-32036:-1:exon

WP_011412249.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31671-32036:-1:exon

SGP1_RS34710
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34710
so part of: sequence
location: complement(32027..32203)
location: region:32027-32203:-1
so has part: feature:32027-32203:-1:exon
subclass of: SO_0000010

position:32027:-1
position: 32027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32203:-1
position: 32203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32027-32203:-1:exon

SGP1_RS34710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34710
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQFVELQASAHQETRLAVSMKEGIARAARYPHSGVVVQLQGDGVPFNPQAMTGGRLWV
SIO_010081: SGP1_RS34710
subclass of: SO_0000673
so part of: SGP1_RS34710
location: complement(32027..32203)
location: region:32027-32203:-1
so has part: feature:32027-32203:-1:exon

WP_242451012.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32027-32203:-1:exon

SGP1_RS34715
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34715
so part of: sequence
location: complement(32258..32680)
location: region:32258-32680:-1
so has part: feature:32258-32680:-1:exon
subclass of: SO_0000010

position:32258:-1
position: 32258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32680:-1
position: 32680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32258-32680:-1:exon

SGP1_RS34715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34715
inference: COORDINATES: protein motif:HMM:NF018726.2
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugative transfer relaxase/helicase TraI
translation: MAYAITVHGAQGASERFAITLNGVEGRREQMVNRASAYVALSRAKEHVQVYTDDEAGWLKAIEKVKERTTAHDVVLGMAPGSEKAASTLYGKTSPLDGAALGPAVLCGGGLSGHSLAHFVAPGKKYPQPHAILPVPGWPR
SIO_010081: SGP1_RS34715
subclass of: SO_0000673
so part of: SGP1_RS34715
location: complement(32258..32680)
location: region:32258-32680:-1
so has part: feature:32258-32680:-1:exon

WP_070108807.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32258-32680:-1:exon

SGP1_RS34720
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34720
so part of: sequence
location: complement(32742..32975)
location: region:32742-32975:-1
so has part: feature:32742-32975:-1:exon
subclass of: SO_0000010

position:32742:-1
position: 32742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32975:-1
position: 32975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32742-32975:-1:exon

SGP1_RS34720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34720
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSGIDSASRTVSLQDSDCIRRQYSPANAVREGVTLYTPRDIEISMGDRLRFSKSDVELGHVANSTWTVQEMRVTLSH
SIO_010081: SGP1_RS34720
subclass of: SO_0000673
so part of: SGP1_RS34720
location: complement(32742..32975)
location: region:32742-32975:-1
so has part: feature:32742-32975:-1:exon

WP_070108808.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32742-32975:-1:exon

SGP1_RS34725
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34725
so part of: sequence
location: complement(33228..33764)
location: region:33228-33764:-1
so has part: feature:33228-33764:-1:exon
subclass of: SO_0000010

position:33228:-1
position: 33228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33764:-1
position: 33764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33228-33764:-1:exon

SGP1_RS34725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34725
inference: COORDINATES: protein motif:HMM:NF024991.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MPAVLNDAPELTPGQRQAVELVLTTRDRFVSIQGYVGVGKTTQFQAVLAGINALPVVQQPRVIGLAPTNRAVGEMQSAGVDAQTLASFLHEVGTILAAGETHDYHRHTLFLVDESSMIGNSDMAKAYALIAEGGGRAVMSGDEAQLQPISPCTPFRLVQGRSAIDMAVMKEIVRQTPR
SIO_010081: SGP1_RS34725
subclass of: SO_0000673
so part of: SGP1_RS34725
location: complement(33228..33764)
location: region:33228-33764:-1
so has part: feature:33228-33764:-1:exon

WP_243466339.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33228-33764:-1:exon

SGP1_RS34730
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34730
so part of: sequence
location: complement(33939..34160)
location: region:33939-34160:-1
so has part: feature:33939-34160:-1:exon
subclass of: SO_0000010

position:33939:-1
position: 33939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34160:-1
position: 34160
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33939-34160:-1:exon

SGP1_RS34730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34730
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGEQVIALAGTDSLDDALTRKKAVLFTPAQQAIHLAIPTPEGEAVAFSQSRLLAGELTFADKGVGINALQGGS
SIO_010081: SGP1_RS34730
subclass of: SO_0000673
so part of: SGP1_RS34730
location: complement(33939..34160)
location: region:33939-34160:-1
so has part: feature:33939-34160:-1:exon

WP_242451015.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33939-34160:-1:exon

SGP1_RS34735
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34735
so part of: sequence
location: complement(34106..34357)
location: region:34106-34357:-1
so has part: feature:34106-34357:-1:exon
subclass of: SO_0000010

position:34106:-1
position: 34106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34357:-1
position: 34357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34106-34357:-1:exon

SGP1_RS34735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34735
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAPAYVESLGASVSDQAVVDAAVKKSELNSETLSGIAHSGKQVNLYSALDTRKTLEKVAQHRLTVWWGSRSLPWRGRIASMMP
SIO_010081: SGP1_RS34735
subclass of: SO_0000673
so part of: SGP1_RS34735
location: complement(34106..34357)
location: region:34106-34357:-1
so has part: feature:34106-34357:-1:exon

WP_050747950.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34106-34357:-1:exon

SGP1_RS34740
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34740
so part of: sequence
location: complement(34537..34743)
location: region:34537-34743:-1
so has part: feature:34537-34743:-1:exon
subclass of: SO_0000010

position:34537:-1
position: 34537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34743:-1
position: 34743
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34537-34743:-1:exon

SGP1_RS34740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34740
inference: COORDINATES: protein motif:HMM:NF037215.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVVLTPVWLDSKNRAACDTYREGRVIERVGVKTRTLVLRDAAGQTHPLALRDIDKNWSLFRAGTIAVA
SIO_010081: SGP1_RS34740
subclass of: SO_0000673
so part of: SGP1_RS34740
location: complement(34537..34743)
location: region:34537-34743:-1
so has part: feature:34537-34743:-1:exon

WP_041867727.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34537-34743:-1:exon

SGP1_RS34745
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34745
so part of: sequence
location: complement(34731..34862)
location: region:34731-34862:-1
so has part: feature:34731-34862:-1:exon
subclass of: SO_0000010

position:34731:-1
position: 34731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34862:-1
position: 34862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34731-34862:-1:exon

SGP1_RS34745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34745
inference: COORDINATES: protein motif:HMM:NF037306.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MREGIPAVAQVSGPADQRQLTSVVRAALKDAGLLGAKSRRWWY
SIO_010081: SGP1_RS34745
subclass of: SO_0000673
so part of: SGP1_RS34745
location: complement(34731..34862)
location: region:34731-34862:-1
so has part: feature:34731-34862:-1:exon

WP_242451016.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34731-34862:-1:exon

SGP1_RS34750
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34750
pseudo: true
so part of: sequence
location: complement(34802..>35035)
location: region:34802-35035:-1
so has part: feature:34802-35035:-1:exon
subclass of: SO_0000010

position:34802:-1
position: 34802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35035:-1
position: 35035
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34802-35035:-1:exon

SGP1_RS34750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34750
inference: COORDINATES: protein motif:HMM:NF025105.2
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: SGP1_RS34750
subclass of: SO_0000673
so part of: SGP1_RS34750
location: complement(34802..>35035)
location: region:34802-35035:-1
so has part: feature:34802-35035:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:34802-35035:-1:exon

SGP1_RS31620
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS31620
pseudo: true
so part of: sequence
location: complement(35191..>36029)
location: region:35191-36029:-1
so has part: feature:35191-36029:-1:exon
subclass of: SO_0000010

position:35191:-1
position: 35191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36029:-1
position: 36029
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35191-36029:-1:exon

SGP1_RS31620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS31620
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001756807.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: conjugal transfer protein TraN
SIO_010081: SGP1_RS31620
subclass of: SO_0000673
so part of: SGP1_RS31620
location: complement(35191..>36029)
location: region:35191-36029:-1
so has part: feature:35191-36029:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:35191-36029:-1:exon

SGP1_RS22270
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22270
so part of: sequence
location: complement(36227..36442)
location: region:36227-36442:-1
so has part: feature:36227-36442:-1:exon
subclass of: SO_0000010

position:36227:-1
position: 36227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36442:-1
position: 36442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36227-36442:-1:exon

SGP1_RS22270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22270
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVARRRTGARDVPGAVYRQTDGRAVHLEVQNALHAYGWPTTITVLGTQAGYGQSDWGSRDLGVGGVTLNEG
SIO_010081: SGP1_RS22270
subclass of: SO_0000673
so part of: SGP1_RS22270
location: complement(36227..36442)
location: region:36227-36442:-1
so has part: feature:36227-36442:-1:exon

WP_041867728.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36227-36442:-1:exon

SGP1_RS22280
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22280
so part of: sequence
location: complement(36801..37010)
location: region:36801-37010:-1
so has part: feature:36801-37010:-1:exon
subclass of: SO_0000010

position:36801:-1
position: 36801
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:37010:-1
position: 37010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36801-37010:-1:exon

SGP1_RS22280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22280
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKHSHAWCPLWLAALMSVAPEGFAEGDGVYRAGNAFADALSVQSVSTLETMKPAEVIPNYTDRPPEQVY
SIO_010081: SGP1_RS22280
subclass of: SO_0000673
so part of: SGP1_RS22280
location: complement(36801..37010)
location: region:36801-37010:-1
so has part: feature:36801-37010:-1:exon

WP_041867730.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36801-37010:-1:exon

SGP1_RS22285
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
gene: trbC
locus tag: SGP1_RS22285
old locus tag: SGP1_0015
so part of: sequence
location: complement(37007..37618)
location: region:37007-37618:-1
so has part: feature:37007-37618:-1:exon
subclass of: SO_0000010

position:37007:-1
position: 37007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:37618:-1
position: 37618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37007-37618:-1:exon

SGP1_RS22285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
gene: trbC
locus tag: SGP1_RS22285
old locus tag: SGP1_0015
function: putative pilus assembly protein
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001473203.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type-F conjugative transfer system pilin assembly protein TrbC
translation: MNAGLRIFIGMALLTAFRVGAEGDAERAWLREQERRSADLHVATERPAFLRPQVPLAPDDQRFIDRLAEKSRQAGDGKQPAENAVYFVSFSMPLEGLAAMLQETRRFGIPATLRGMVNNDMRETVQRVMALVKNGGADGVQIDPQPFHAFGIQSVPALVVQCERGFDVIRGNLHIEDGLRRIANDGDCAPVAQALLDKAEVAK
SIO_010081: SGP1_RS22285
subclass of: SO_0000673
so part of: SGP1_RS22285
location: complement(37007..37618)
location: region:37007-37618:-1
so has part: feature:37007-37618:-1:exon

WP_011279159.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:37007-37618:-1:exon

SGP1_RS22290
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
gene: traU
locus tag: SGP1_RS22290
old locus tag: SGP1_0016
pseudo: true
so part of: sequence
location: complement(37627..38459)
location: region:37627-38459:-1
so has part: feature:37627-38459:-1:exon
subclass of: SO_0000010

position:37627:-1
position: 37627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:38459:-1
position: 38459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37627-38459:-1:exon

SGP1_RS22290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
gene: traU
locus tag: SGP1_RS22290
old locus tag: SGP1_0016
inference: COORDINATES: similar to AA sequence:RefSeq:NP_490576.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: conjugal transfer pilus assembly protein TraU
SIO_010081: SGP1_RS22290
subclass of: SO_0000673
so part of: SGP1_RS22290
location: complement(37627..38459)
location: region:37627-38459:-1
so has part: feature:37627-38459:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:37627-38459:-1:exon

SGP1_RS22295
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
gene: traW
locus tag: SGP1_RS22295
pseudo: true
so part of: sequence
location: complement(38498..39126)
location: region:38498-39126:-1
so has part: feature:38498-39126:-1:exon
subclass of: SO_0000010

position:38498:-1
position: 38498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39126:-1
position: 39126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38498-39126:-1:exon

SGP1_RS22295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
gene: traW
locus tag: SGP1_RS22295
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004966201.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type-F conjugative transfer system protein TraW
SIO_010081: SGP1_RS22295
subclass of: SO_0000673
so part of: SGP1_RS22295
location: complement(38498..39126)
location: region:38498-39126:-1
so has part: feature:38498-39126:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:38498-39126:-1:exon

SGP1_RS22300
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22300
old locus tag: SGP1_0018
so part of: sequence
location: complement(39274..39609)
location: region:39274-39609:-1
so has part: feature:39274-39609:-1:exon
subclass of: SO_0000010

position:39274:-1
position: 39274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39609:-1
position: 39609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39274-39609:-1:exon

SGP1_RS22300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22300
old locus tag: SGP1_0018
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGAAQCQPTRVTGGAERRPASGSCEYLLAHPTVLLEVSEQLDAQKQRTVTQQVQTALTSQPTLQTALLHDAASPVVATFIEDNPDMCAWCSRRSLFLAVAGRCRCRRRGPD
SIO_010081: SGP1_RS22300
subclass of: SO_0000673
so part of: SGP1_RS22300
location: complement(39274..39609)
location: region:39274-39609:-1
so has part: feature:39274-39609:-1:exon

WP_041867731.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39274-39609:-1:exon

SGP1_RS22305
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22305
old locus tag: SGP1_0019
so part of: sequence
location: complement(39665..39961)
location: region:39665-39961:-1
so has part: feature:39665-39961:-1:exon
subclass of: SO_0000010

position:39665:-1
position: 39665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39961:-1
position: 39961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39665-39961:-1:exon

SGP1_RS22305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22305
old locus tag: SGP1_0019
inference: COORDINATES: protein motif:HMM:NF021213.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbI F-type domain-containing protein
translation: MSTALRVIPERGVVGLSVRRLALWAVLLSSLLTLWLVPRQLGVVRFDMKQTMAAFYLSAAKQSLTPARSEALSARFNEVLQRDIARRMQASREWEDTQ
SIO_010081: SGP1_RS22305
subclass of: SO_0000673
so part of: SGP1_RS22305
location: complement(39665..39961)
location: region:39665-39961:-1
so has part: feature:39665-39961:-1:exon

WP_041867732.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39665-39961:-1:exon

SGP1_RS28690
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS28690
pseudo: true
so part of: sequence
location: complement(39958..>40622)
location: region:39958-40622:-1
so has part: feature:39958-40622:-1:exon
subclass of: SO_0000010

position:39958:-1
position: 39958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40622:-1
position: 40622
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39958-40622:-1:exon

SGP1_RS28690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS28690
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005320903.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type IV secretion system protein TraC
SIO_010081: SGP1_RS28690
subclass of: SO_0000673
so part of: SGP1_RS28690
location: complement(39958..>40622)
location: region:39958-40622:-1
so has part: feature:39958-40622:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:39958-40622:-1:exon

SGP1_RS28695
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS28695
pseudo: true
so part of: sequence
location: complement(<40610..>41030)
location: region:40610-41030:-1
so has part: feature:40610-41030:-1:exon
subclass of: SO_0000010

position:40610:-1
position: 40610
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:41030:-1
position: 41030
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40610-41030:-1:exon

SGP1_RS28695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS28695
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001553749.1
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: conjugal transfer protein TrbI
SIO_010081: SGP1_RS28695
subclass of: SO_0000673
so part of: SGP1_RS28695
location: complement(<40610..>41030)
location: region:40610-41030:-1
so has part: feature:40610-41030:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:40610-41030:-1:exon

SGP1_RS31625
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
gene: traK
locus tag: SGP1_RS31625
pseudo: true
so part of: sequence
location: complement(41192..41936)
location: region:41192-41936:-1
so has part: feature:41192-41936:-1:exon
subclass of: SO_0000010

position:41192:-1
position: 41192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41936:-1
position: 41936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41192-41936:-1:exon

SGP1_RS31625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
gene: traK
locus tag: SGP1_RS31625
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008324157.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type-F conjugative transfer system secretin TraK
SIO_010081: SGP1_RS31625
subclass of: SO_0000673
so part of: SGP1_RS31625
location: complement(41192..41936)
location: region:41192-41936:-1
so has part: feature:41192-41936:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:41192-41936:-1:exon

SGP1_RS34755
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34755
pseudo: true
so part of: sequence
location: complement(<42015..42134)
location: region:42015-42134:-1
so has part: feature:42015-42134:-1:exon
subclass of: SO_0000010

position:42015:-1
position: 42015
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:42134:-1
position: 42134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42015-42134:-1:exon

SGP1_RS34755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34755
inference: COORDINATES: protein motif:HMM:NF017152.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: TraE/TraK family type IV conjugative transfer system protein
SIO_010081: SGP1_RS34755
subclass of: SO_0000673
so part of: SGP1_RS34755
location: complement(<42015..42134)
location: region:42015-42134:-1
so has part: feature:42015-42134:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:42015-42134:-1:exon

SGP1_RS34760
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34760
old locus tag: SGP1_0021
so part of: sequence
location: complement(42131..42487)
location: region:42131-42487:-1
so has part: feature:42131-42487:-1:exon
subclass of: SO_0000010

position:42131:-1
position: 42131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42487:-1
position: 42487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42131-42487:-1:exon

SGP1_RS34760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34760
old locus tag: SGP1_0021
inference: COORDINATES: protein motif:HMM:NF017152.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraE/TraK family type IV conjugative transfer system protein
translation: MKHAARLNSNKIIALSLVLLDAFLFLSVTANVILAITYYRLQGDRQVVVVPMLFKAPFALSENSMDASYLEQMALSFVALRLNVTPETVEASHQFLLSMVKPSAQKSLKLAWRKRRVR
SIO_010081: SGP1_RS34760
subclass of: SO_0000673
so part of: SGP1_RS34760
location: complement(42131..42487)
location: region:42131-42487:-1
so has part: feature:42131-42487:-1:exon

WP_011412255.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42131-42487:-1:exon

SGP1_RS22335
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
gene: traL
locus tag: SGP1_RS22335
old locus tag: SGP1_0022
so part of: sequence
location: complement(42497..42802)
location: region:42497-42802:-1
so has part: feature:42497-42802:-1:exon
subclass of: SO_0000010

position:42497:-1
position: 42497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42802:-1
position: 42802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42497-42802:-1:exon

SGP1_RS22335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
gene: traL
locus tag: SGP1_RS22335
old locus tag: SGP1_0022
function: putative pilus assembly protein
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020325114.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV conjugative transfer system protein TraL
translation: MSGDDIDNYHFPKTLSHQGRWFGLTPYELIPIVLSGCWFFWKGKQIVGLIVMALVYWAIRKLKKGKGSVWLRDLGYWYMPIFLLRDIHKKVPPSCFRQWIK
SIO_010081: SGP1_RS22335
subclass of: SO_0000673
so part of: SGP1_RS22335
location: complement(42497..42802)
location: region:42497-42802:-1
so has part: feature:42497-42802:-1:exon

WP_011279165.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42497-42802:-1:exon

SGP1_RS26035
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS26035
old locus tag: SGP1_0023
so part of: sequence
location: complement(42815..43012)
location: region:42815-43012:-1
so has part: feature:42815-43012:-1:exon
subclass of: SO_0000010

position:42815:-1
position: 42815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43012:-1
position: 43012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42815-43012:-1:exon

SGP1_RS26035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS26035
old locus tag: SGP1_0023
function: putative pilus subunit
inference: COORDINATES: protein motif:HMM:NF017337.2
GO component: GO:0005576 - extracellular region [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV conjugative transfer system pilin TraA
translation: MIYSSQVTLRSGRPLALNPLCTSGLSWGEVLAGMVLYVLTHSFKFLFGFIILSIIGNVGMKVAWY
SIO_010081: SGP1_RS26035
subclass of: SO_0000673
so part of: SGP1_RS26035
location: complement(42815..43012)
location: region:42815-43012:-1
so has part: feature:42815-43012:-1:exon

WP_011279166.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:42815-43012:-1:exon

SGP1_RS22340
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22340
so part of: sequence
location: complement(43235..43459)
location: region:43235-43459:-1
so has part: feature:43235-43459:-1:exon
subclass of: SO_0000010

position:43235:-1
position: 43235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43459:-1
position: 43459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43235-43459:-1:exon

SGP1_RS22340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22340
function: putative DNA-binding protein
inference: COORDINATES: protein motif:HMM:NF017333.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraY domain-containing protein
translation: MRHQRRDDNPNKLITFKLNQEYTALLYASIQKTGKSRSGEVKLWVQDHLKRFPDFNPDSREVMKSQITSESLSL
SIO_010081: SGP1_RS22340
subclass of: SO_0000673
so part of: SGP1_RS22340
location: complement(43235..43459)
location: region:43235-43459:-1
so has part: feature:43235-43459:-1:exon

WP_011279167.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43235-43459:-1:exon

SGP1_RS22345
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22345
old locus tag: SGP1_0024
so part of: sequence
location: complement(44439..45167)
location: region:44439-45167:-1
so has part: feature:44439-45167:-1:exon
subclass of: SO_0000010

position:44439:-1
position: 44439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45167:-1
position: 45167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44439-45167:-1:exon

SGP1_RS22345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22345
old locus tag: SGP1_0024
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011145283.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PAS and helix-turn-helix domain-containing protein
translation: MNSDNMSFSVNKDLDVHSKNFDAFISYMENSNDFWIIKNEESRFVYANDIMLYYSGLPKGFNIEGKLDSECPAPWSEFEEIIQCNDKNVMEKKKTIPVLNTFTYGGREKIVQPFMLEVTPLIRDGMSIGVVGRGKKLDIYSMYHFENGKPPGQLSFGKPGNVFTDREFDIVFFALQSLTSKEISKKLDISHRTVENRLQDIYNKLNIHSLHELKEYCICKGYNNYAPTRFINPNPYIPLSTD
SIO_010081: SGP1_RS22345
subclass of: SO_0000673
so part of: SGP1_RS22345
location: complement(44439..45167)
location: region:44439-45167:-1
so has part: feature:44439-45167:-1:exon

WP_011412256.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:44439-45167:-1:exon

SGP1_RS22350
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22350
pseudo: true
so part of: sequence
location: complement(46021..>46536)
location: region:46021-46536:-1
so has part: feature:46021-46536:-1:exon
subclass of: SO_0000010

position:46021:-1
position: 46021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:46536:-1
position: 46536
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46021-46536:-1:exon

SGP1_RS22350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22350
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001913678.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5 family transposase
SIO_010081: SGP1_RS22350
subclass of: SO_0000673
so part of: SGP1_RS22350
location: complement(46021..>46536)
location: region:46021-46536:-1
so has part: feature:46021-46536:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:46021-46536:-1:exon

SGP1_RS22355
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22355
old locus tag: SGP1_0026
so part of: sequence
location: complement(46959..47396)
location: region:46959-47396:-1
so has part: feature:46959-47396:-1:exon
subclass of: SO_0000010

position:46959:-1
position: 46959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:47396:-1
position: 47396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46959-47396:-1:exon

SGP1_RS22355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22355
old locus tag: SGP1_0026
function: putative cytoplasmic protein
inference: COORDINATES: protein motif:HMM:NF018792.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1380 family protein
translation: MYGTIKAISERLFHAYGGDEPLAVLIWDRPAIADIGRDDHVTDEEVLTVLEYIGSLPISLYRDAGINREGVEEMIYETIARRRRSVTVDAGMLESVLHLAASVLDSNTPEDMDAETRSGHLAIAVLVKVLHTCRPPPGGRQYSGG
SIO_010081: SGP1_RS22355
subclass of: SO_0000673
so part of: SGP1_RS22355
location: complement(46959..47396)
location: region:46959-47396:-1
so has part: feature:46959-47396:-1:exon

WP_011279171.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:46959-47396:-1:exon

SGP1_RS22360
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22360
old locus tag: SGP1_0027
so part of: sequence
location: complement(47517..47882)
location: region:47517-47882:-1
so has part: feature:47517-47882:-1:exon
subclass of: SO_0000010

position:47517:-1
position: 47517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:47882:-1
position: 47882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47517-47882:-1:exon

SGP1_RS22360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22360
old locus tag: SGP1_0027
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006322811.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: antirestriction protein
translation: MFHLPSAALRVEESDRLSFLPYLFGADFLYAEMQVYDYANCYLPEYNGGFWHFIRLPDGGGYMMPDVGPVLLVNDDNGFDRTVSSDVAGIILTSRVINHRCGLHHDRDRAGLVTLFIQREE
SIO_010081: SGP1_RS22360
subclass of: SO_0000673
so part of: SGP1_RS22360
location: complement(47517..47882)
location: region:47517-47882:-1
so has part: feature:47517-47882:-1:exon

WP_011412259.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:47517-47882:-1:exon

SGP1_RS22380
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22380
so part of: sequence
location: 50849..51325
location: region:50849-51325:1
so has part: feature:50849-51325:1:exon
subclass of: SO_0000010

position:50849:1
position: 50849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51325:1
position: 51325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50849-51325:1:exon

SGP1_RS22380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22380
function: putative transcriptional regulator
inference: COORDINATES: protein motif:HMM:NF020037.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PAS domain-containing protein
translation: MENNRKQWSIKDHESRYLFINKSALQYYGIPLNFDYHGCRDEELPHPGAELASEFQKNDKIILNKEIPITEIETHIYGKMKKLHSHICEKHPFYDKNKKLIGVICQGRNIENSFIYYNLIENTHGSPTTIPQLKYLQKENLKLFFYHFRDCPAKKSLK
SIO_010081: SGP1_RS22380
subclass of: SO_0000673
so part of: SGP1_RS22380
location: 50849..51325
location: region:50849-51325:1
so has part: feature:50849-51325:1:exon

WP_011279175.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:50849-51325:1:exon

SGP1_RS34765
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34765
so part of: sequence
location: complement(51492..51866)
location: region:51492-51866:-1
so has part: feature:51492-51866:-1:exon
subclass of: SO_0000010

position:51492:-1
position: 51492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51866:-1
position: 51866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51492-51866:-1:exon

SGP1_RS34765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34765
inference: COORDINATES: protein motif:HMM:NF012993.2
GO process: GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: nitrilase-related carbon-nitrogen hydrolase
translation: MVCYDIGFPEVARIFAMNNVQILFVPAVWPEYAIDIWNINCAARALENGIYLAAVNRWGKEADTRMFGGSKIVSPEGNTMILVSEKGEDIIFFNIDLALQAKTRIALPYLKDMRVSFYKEHYKE
SIO_010081: SGP1_RS34765
subclass of: SO_0000673
so part of: SGP1_RS34765
location: complement(51492..51866)
location: region:51492-51866:-1
so has part: feature:51492-51866:-1:exon

WP_050747955.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:51492-51866:-1:exon

SGP1_RS34770
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34770
so part of: sequence
location: complement(51893..52123)
location: region:51893-52123:-1
so has part: feature:51893-52123:-1:exon
subclass of: SO_0000010

position:51893:-1
position: 51893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:52123:-1
position: 52123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51893-52123:-1:exon

SGP1_RS34770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34770
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKVEVVKLICYVSKLANDLDLIIISEFVERGENPGQVYNSAGIWVPGGDSWKHVHRKIHLWGDEKNGSAKVVIVKS
SIO_010081: SGP1_RS34770
subclass of: SO_0000673
so part of: SGP1_RS34770
location: complement(51893..52123)
location: region:51893-52123:-1
so has part: feature:51893-52123:-1:exon

WP_243466341.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:51893-52123:-1:exon

SGP1_RS34775
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34775
so part of: sequence
location: complement(52074..52304)
location: region:52074-52304:-1
so has part: feature:52074-52304:-1:exon
subclass of: SO_0000010

position:52074:-1
position: 52074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:52304:-1
position: 52304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52074-52304:-1:exon

SGP1_RS34775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34775
inference: COORDINATES: protein motif:HMM:NF012993.2
GO process: GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: nitrilase-related carbon-nitrogen hydrolase
translation: MINVALAQIDTVLGNKGKNLDHIKSFFHRAADNKANIICFPELATTGYTPDLLGTSLWNLSESRGGETDLLCKQTG
SIO_010081: SGP1_RS34775
subclass of: SO_0000673
so part of: SGP1_RS34775
location: complement(52074..52304)
location: region:52074-52304:-1
so has part: feature:52074-52304:-1:exon

WP_242451019.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:52074-52304:-1:exon

SGP1_RS28720
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS28720
pseudo: true
so part of: sequence
location: 52347..53637
location: region:52347-53637:1
so has part: feature:52347-53637:1:exon
subclass of: SO_0000010

position:52347:1
position: 52347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53637:1
position: 53637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52347-53637:1:exon

SGP1_RS28720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS28720
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011411299.1
note: frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: cytosine permease
SIO_010081: SGP1_RS28720
subclass of: SO_0000673
so part of: SGP1_RS28720
location: 52347..53637
location: region:52347-53637:1
so has part: feature:52347-53637:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:52347-53637:1:exon

SGP1_RS22390
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22390
old locus tag: SGP1_0028
so part of: sequence
location: complement(53722..54648)
location: region:53722-54648:-1
so has part: feature:53722-54648:-1:exon
subclass of: SO_0000010

position:53722:-1
position: 53722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54648:-1
position: 54648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53722-54648:-1:exon

SGP1_RS22390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22390
old locus tag: SGP1_0028
function: putative transposase
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011147726.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Rpn family recombination-promoting nuclease/putative transposase
translation: MSKKFTPTPHDAVFRQFLHDKATAQDFFDIWLPDDIKALCDWETLKPESGSFIDPDMKPYQSDILYSVNANGVDGYVYCLIEHQSTPDKLMAWRLMRYSMAAMQRHLEAGHDKLPLVFPVLFYCGEKSPHPYSTNWLDCFERPDIAAKIYSQPFRLMDVTTLDDDAIMQHRRMALLELIQKHIRRRDMTELLDSIVKLLSYNYYTDTQVVTMMNYLVQEGNAASPRTFITEIAKRAEKHEEALMTIAEALKQEGYQIGRDDGRQEGIQQGEHAAAMKIARQMLSRGIARDAVKACTGLSDNALDNLMC
SIO_010081: SGP1_RS22390
subclass of: SO_0000673
so part of: SGP1_RS22390
location: complement(53722..54648)
location: region:53722-54648:-1
so has part: feature:53722-54648:-1:exon

WP_011279176.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53722-54648:-1:exon

SGP1_RS22395
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22395
old locus tag: SGP1_0029
so part of: sequence
location: complement(54645..55136)
location: region:54645-55136:-1
so has part: feature:54645-55136:-1:exon
subclass of: SO_0000010

position:54645:-1
position: 54645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:55136:-1
position: 55136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54645-55136:-1:exon

SGP1_RS22395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22395
old locus tag: SGP1_0029
inference: COORDINATES: protein motif:HMM:NF016255.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ProQ/FINO family protein
translation: MTEPRLPLLSIRRKPKIYVNPKPADKPAPAPKSAKPPKAKAPKPVKEPKLKQPPPKPLSREERIARNRAKKLRQGQEAIASLVANWPSLFDLGYPKLLKVGIAADILDDIKARELDLTRAKASATLMFYTQRVFYQQAHALKQLEKWRVETESAVSPGEEPTP
SIO_010081: SGP1_RS22395
subclass of: SO_0000673
so part of: SGP1_RS22395
location: complement(54645..55136)
location: region:54645-55136:-1
so has part: feature:54645-55136:-1:exon

WP_011412260.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:54645-55136:-1:exon

SGP1_RS22400
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22400
old locus tag: SGP1_0030
so part of: sequence
location: complement(55387..55899)
location: region:55387-55899:-1
so has part: feature:55387-55899:-1:exon
subclass of: SO_0000010

position:55387:-1
position: 55387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:55899:-1
position: 55899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55387-55899:-1:exon

SGP1_RS22400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22400
old locus tag: SGP1_0030
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSCQRVSTPDGRVTYNPLTHRTLAVQTGSCAFTDAAGSLFANAPMQRMLGCDERACGNDSPLVSLFLVQETLARQQRQPLWVFNSQPYGAYGITQLWLFCFLPDVDDYGGCNGIFCHARPFPFLSLPDYLECVNPGTVEDWHRFTDRERGIIFLSLQRLRSKRIGQWLRI
SIO_010081: SGP1_RS22400
subclass of: SO_0000673
so part of: SGP1_RS22400
location: complement(55387..55899)
location: region:55387-55899:-1
so has part: feature:55387-55899:-1:exon

WP_158302482.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:55387-55899:-1:exon

SGP1_RS22405
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22405
old locus tag: SGP1_0031
so part of: sequence
location: complement(55853..56137)
location: region:55853-56137:-1
so has part: feature:55853-56137:-1:exon
subclass of: SO_0000010

position:55853:-1
position: 55853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:56137:-1
position: 56137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55853-56137:-1:exon

SGP1_RS22405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22405
old locus tag: SGP1_0031
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPLSSLTPDDPILQDYFLPAAQDEAVSGSLAVEEQGVEVFAVWVCGEIRVFAGRHVASAAGFDHLGASALFQQAAHACVDELSARLNAGWEGNL
SIO_010081: SGP1_RS22405
subclass of: SO_0000673
so part of: SGP1_RS22405
location: complement(55853..56137)
location: region:55853-56137:-1
so has part: feature:55853-56137:-1:exon

WP_011412262.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:55853-56137:-1:exon

SGP1_RS34780
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34780
pseudo: true
so part of: sequence
location: complement(<56552..>56697)
location: region:56552-56697:-1
so has part: feature:56552-56697:-1:exon
subclass of: SO_0000010

position:56552:-1
position: 56552
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:56697:-1
position: 56697
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56552-56697:-1:exon

SGP1_RS34780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34780
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001743492.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: SGP1_RS34780
subclass of: SO_0000673
so part of: SGP1_RS34780
location: complement(<56552..>56697)
location: region:56552-56697:-1
so has part: feature:56552-56697:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:56552-56697:-1:exon

SGP1_RS34785
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS34785
pseudo: true
so part of: sequence
location: <56818..57039
location: region:56818-57039:1
so has part: feature:56818-57039:1:exon
subclass of: SO_0000010

position:56818:1
position: 56818
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:57039:1
position: 57039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56818-57039:1:exon

SGP1_RS34785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS34785
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611450.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS3 family transposase
SIO_010081: SGP1_RS34785
subclass of: SO_0000673
so part of: SGP1_RS34785
location: <56818..57039
location: region:56818-57039:1
so has part: feature:56818-57039:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:56818-57039:1:exon

SGP1_RS22415
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
gene: tnpB
locus tag: SGP1_RS22415
so part of: sequence
location: complement(57007..57231)
location: region:57007-57231:-1
so has part: feature:57007-57231:-1:exon
subclass of: SO_0000010

position:57007:-1
position: 57007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57231:-1
position: 57231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57007-57231:-1:exon

SGP1_RS22415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
gene: tnpB
locus tag: SGP1_RS22415
function: putative transposase
inference: COORDINATES: protein motif:HMM:NF033819.0
note: TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS66 family insertion sequence element accessory protein TnpB
translation: MKMFVDVPAIYLYPGHVDFRKSINGLVLIIEQNMAHSPFDEALFVFCNRPARAVSVKVVVASVNSCSGSFPLRI
SIO_010081: SGP1_RS22415
subclass of: SO_0000673
so part of: SGP1_RS22415
location: complement(57007..57231)
location: region:57007-57231:-1
so has part: feature:57007-57231:-1:exon

WP_011279180.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:57007-57231:-1:exon

SGP1_RS31065
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS31065
so part of: sequence
location: complement(57423..57578)
location: region:57423-57578:-1
so has part: feature:57423-57578:-1:exon
subclass of: SO_0000010

position:57423:-1
position: 57423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57578:-1
position: 57578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57423-57578:-1:exon

SGP1_RS31065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS31065
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSMHRTRDEWRAIIEEQRRSVLVSDKLNFVTSTILRAPLSPMLNSVFRPLA
SIO_010081: SGP1_RS31065
subclass of: SO_0000673
so part of: SGP1_RS31065
location: complement(57423..57578)
location: region:57423-57578:-1
so has part: feature:57423-57578:-1:exon

WP_011279181.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:57423-57578:-1:exon

SGP1_RS22420
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22420
old locus tag: SGP1_0033
so part of: sequence
location: complement(57659..58294)
location: region:57659-58294:-1
so has part: feature:57659-58294:-1:exon
subclass of: SO_0000010

position:57659:-1
position: 57659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:58294:-1
position: 58294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57659-58294:-1:exon

SGP1_RS22420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22420
old locus tag: SGP1_0033
function: putative demethylmenaquinone methyltransferase
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017131171.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RraA family protein
translation: MSYVIMPRRQGVEADILQHYRQVNASTLGHLTTEGYLPGLRPRVEQCHMVGNVVTVKLFPPDGAILREALLLSQPGDVLVIDSSADEHCACWGELRNLAGLIKQLAGVVVVGAVTDITALRCQRLPVFSLGISAVTTRSLAERGEINTSLHVMEGTIHPGDLALGDDDGVFMVNARQAVELLPQLLLKEQQDQQKRTLLAQRLKACCSARQ
SIO_010081: SGP1_RS22420
subclass of: SO_0000673
so part of: SGP1_RS22420
location: complement(57659..58294)
location: region:57659-58294:-1
so has part: feature:57659-58294:-1:exon

WP_011279182.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:57659-58294:-1:exon

SGP1_RS22425
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22425
old locus tag: SGP1_0034
so part of: sequence
location: complement(58291..59061)
location: region:58291-59061:-1
so has part: feature:58291-59061:-1:exon
subclass of: SO_0000010

position:58291:-1
position: 58291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:59061:-1
position: 59061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58291-59061:-1:exon

SGP1_RS22425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22425
old locus tag: SGP1_0034
function: putative uncharacterized Fe-S protein
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019361519.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IucA/IucC family C-terminal-domain containing protein
translation: MTFSLEQWAQLSGGLLLTTATQADPARSLPAATLLDDACCEQLLRTLTPTIGSPSLAITASFLAKRVSFLTTGACLYAMSAYDQGLRLSLDNALIEYGHDDGRWTSKMPLHNISPFGYQPGEREMWRAEIVTILFEGLLAPLWQTFSRVAGISAQILWENSAVRVYSLYERRMAKIDDEFIRKRCETDFFWLCEQAEPALFGLDINPLRHFRRPVTAVEGQDCGVRFRRTCCFYYKASTPVEYCSTCPLLKPGKNA
SIO_010081: SGP1_RS22425
subclass of: SO_0000673
so part of: SGP1_RS22425
location: complement(58291..59061)
location: region:58291-59061:-1
so has part: feature:58291-59061:-1:exon

WP_011279183.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:58291-59061:-1:exon

SGP1_RS22430
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22430
old locus tag: SGP1_0035
so part of: sequence
location: complement(59058..59846)
location: region:59058-59846:-1
so has part: feature:59058-59846:-1:exon
subclass of: SO_0000010

position:59058:-1
position: 59058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:59846:-1
position: 59846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59058-59846:-1:exon

SGP1_RS22430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22430
old locus tag: SGP1_0035
function: putative ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase component
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013317301.1
GO function: GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MMSFATRALTLCYQRQTIIEDLDIVLPRGKVSVLIGSNGCGKSTLLKSFARLLKPQQGAVILNGTDIWHKPTATVARELAILPQMPSAPEGITVRQLVSLGRYPYQNWLQQWSSEDEAMVNRALRQTGVEALADRPVDTLSGGQRQRAWIAMTLAQDTEIVLLDEPTTFLDLAHQVEVLELLRELNQRENKTIIMVLHDLNLACRYADHLVAVHNRTVVAQGEPQAILTEELVKCVFDLNCRIIEDPFFSTPLCIPFGRERS
SIO_010081: SGP1_RS22430
subclass of: SO_0000673
so part of: SGP1_RS22430
location: complement(59058..59846)
location: region:59058-59846:-1
so has part: feature:59058-59846:-1:exon

WP_011279184.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:59058-59846:-1:exon

SGP1_RS22435
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22435
old locus tag: SGP1_0036
so part of: sequence
location: complement(59860..60891)
location: region:59860-60891:-1
so has part: feature:59860-60891:-1:exon
subclass of: SO_0000010

position:59860:-1
position: 59860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:60891:-1
position: 60891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59860-60891:-1:exon

SGP1_RS22435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22435
old locus tag: SGP1_0036
function: putative ABC-type Fe3+-siderophore transport system, permease component
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007925441.1
GO function: GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO process: GO:0006826 - iron ion transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: iron ABC transporter permease
translation: MANTVIWRYGRFLCRINVSTLWRVLLTGVLALMVAGFSAAQGAVAVSPLALLHVLSGSADPALSFIIGQLRLPRILLAALVGGALGVSGLILQSIIRNPLASPDLLGISSGASTAAVVYLSFFSMTLGGQYLPLAAMTGAAIAMLAVYGLAWQRGVSPLRLVLIGVGVSALLTAITTFLLVFSPLSTTLSAYVWMAGSVYGANWDDVRTLGLWLLALLPWLALLARQVMFQQLDDGLATGIGVRVQWLRGGLLLLSVALAGTAIAWGGAMAFVGLIAPHIARRLVAPTFSGQALMSTLTGAILVMLADSVGRVLFLPADLPAGIFVAVLGAPFFLYLLIRQRQ
SIO_010081: SGP1_RS22435
subclass of: SO_0000673
so part of: SGP1_RS22435
location: complement(59860..60891)
location: region:59860-60891:-1
so has part: feature:59860-60891:-1:exon

WP_011279185.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:59860-60891:-1:exon

SGP1_RS22440
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22440
old locus tag: SGP1_0037
so part of: sequence
location: complement(60884..61870)
location: region:60884-61870:-1
so has part: feature:60884-61870:-1:exon
subclass of: SO_0000010

position:60884:-1
position: 60884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:61870:-1
position: 61870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60884-61870:-1:exon

SGP1_RS22440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22440
old locus tag: SGP1_0037
function: putative Achromobactin transport system permease protein
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008047304.1
GO function: GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO process: GO:0006826 - iron ion transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: iron ABC transporter permease
translation: MSNGMKLLLATGGVSLLMLLSLMVGARWILPSQVMAALLSPDALNVNHILVTTRLSRTLMAVTVGASLAVAGVLMQALTRNPLASPGLFGVNAGATFFVILFSSLFSLHAPGGWLWSAFAGAAIAGALVWLIGNMGQGSLSPLRIVLAGAAITALFSALSQALLVVDQEGLDTVLFYLAGSLSERSLPLVLPLVGGCLAALLAAFTMAGQVNVLNAGDEIATGLGQRTGMIRALMSFIIIILVSSAVALAGSIGFIGLVVPHMVRKGLAIDHRWLLPGSALLGAGLLLLADMLARVVILPQEVPVGVMTALFGAPFFIMLARRGGLNG
SIO_010081: SGP1_RS22440
subclass of: SO_0000673
so part of: SGP1_RS22440
location: complement(60884..61870)
location: region:60884-61870:-1
so has part: feature:60884-61870:-1:exon

WP_011279222.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:60884-61870:-1:exon

SGP1_RS22445
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22445
old locus tag: SGP1_0038
so part of: sequence
location: complement(61867..62784)
location: region:61867-62784:-1
so has part: feature:61867-62784:-1:exon
subclass of: SO_0000010

position:61867:-1
position: 61867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:62784:-1
position: 62784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:61867-62784:-1:exon

SGP1_RS22445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22445
old locus tag: SGP1_0038
function: putative Achromobactin-binding periplasmic protein precursor
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017802376.1
GO process: GO:0015891 - siderophore transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: iron-siderophore ABC transporter substrate-binding protein
translation: MTNRPLHQPTRRRLLRLAAGWLAGSVIASGRAQTISPRVVTLFQGATDSAVALGVTPVAVVDSWSEKPTYKYLRQALQGVPHVGLETQPSLEHIALLQPDLIVVSRFRHQRIAPLLQQIAPLVMLDNVFEFKQTLSVTAAALHRQAQAEVCLQQWQQRVANLRSQLQQRFAGHWPPTVSVLDIREDHIRSYLPGSFPGWVLSELGFGWNTTAQTTQGVSIKLSGKESLPIVNADIFFVFLRSESAGVQRNYHSLLQHPLWLQLRAPQQQQVWLVNGVVWSLSGGILGANLMLDDIERQVIPGTTA
SIO_010081: SGP1_RS22445
subclass of: SO_0000673
so part of: SGP1_RS22445
location: complement(61867..62784)
location: region:61867-62784:-1
so has part: feature:61867-62784:-1:exon

WP_011279223.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:61867-62784:-1:exon

SGP1_RS22450
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22450
old locus tag: SGP1_0039
so part of: sequence
location: complement(62774..64621)
location: region:62774-64621:-1
so has part: feature:62774-64621:-1:exon
subclass of: SO_0000010

position:62774:-1
position: 62774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:64621:-1
position: 64621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:62774-64621:-1:exon

SGP1_RS22450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22450
old locus tag: SGP1_0039
function: putative siderophore synthetase component
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017683653.1
GO process: GO:0019290 - siderophore biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IucA/IucC family protein
translation: MTTQTRAADGVMQDLVDRLLAENFFGPGPLSMIEPAQWSSALPLPFVELSAEQRIWCWQDITIALRPGITQLWEKVPGTAVLQRQPNAPDWQSLSPEAFMGCVFAGTDNISQDNGKGQALFMDALRCSIRQMALSLNHRVATQDLMSKDGGAFFLAMEQWASLRDRPYHPLAKAKQGLNDADYQAYQAEFARPVALHWVAIEKSLLLCGSGVTDVQQQYPARYLLPGAQRQALWQEMRSLGIAESHIALPVHPWQSRQVLEAQLGSWFADGLCQRLQFCDTEVFATSSLRSMTPCFNGADYLKLPIAVYSLASSRYLPAVKMINGGLSEALLREGRDQDPILQRSLYLCDENRWWAFMPPQATLFDDAPRHLSAQVRGYPAELLDDPDCRLMPMAALGTSLPDSKQHFFDDWLQYRQLPADAASVLILFRELCHCFFGVNLRMFRLGMMGEVHGQNAVLVWKAGKADGLLLRDHDSLRIFVPWLERVGLADPEYRLKKGHPNTLYHQRAEDLLFWLQTLGIQVNMRAIIDTLAETYAIPAVTLWLALREELELLIESIDFDDEARSMIRHQLFEVANWPQKLLLTPMIERAGGPGSMPFGKGEVVNPFRRLARDQ
SIO_010081: SGP1_RS22450
subclass of: SO_0000673
so part of: SGP1_RS22450
location: complement(62774..64621)
location: region:62774-64621:-1
so has part: feature:62774-64621:-1:exon

WP_011279188.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:62774-64621:-1:exon

SGP1_RS22455
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22455
old locus tag: SGP1_0040
so part of: sequence
location: complement(64623..65399)
location: region:64623-65399:-1
so has part: feature:64623-65399:-1:exon
subclass of: SO_0000010

position:64623:-1
position: 64623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:65399:-1
position: 65399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64623-65399:-1:exon

SGP1_RS22455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22455
old locus tag: SGP1_0040
function: putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009049138.1
GO function: GO:0003824 - catalytic activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: aldolase/citrate lyase family protein
translation: MLRTNRLKQKLRDGQHAYGLFASLPSPVAIELIAEAGFDFVIIDCEHVLINPETVENMIRTAESYNITPLVRAADADAKTLLRLLDGGAQGIVLPMVEQPEALAAAIAACKYHPLGQRSLNAGRPGSFGKHSLADYVQFANEQIMVVAMIESAAGVQHATEIAAVPGLDMILEGAADLSQSLGLPWQTGHAQVQQGLLQCWQATHQAGVPYCAIPRQPDDHRQWRQCGVNTFVLGDERGIAFRALQARLATTTSEGNE
SIO_010081: SGP1_RS22455
subclass of: SO_0000673
so part of: SGP1_RS22455
location: complement(64623..65399)
location: region:64623-65399:-1
so has part: feature:64623-65399:-1:exon

WP_011279189.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:64623-65399:-1:exon

SGP1_RS22460
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22460
old locus tag: SGP1_0041
so part of: sequence
location: complement(65393..67213)
location: region:65393-67213:-1
so has part: feature:65393-67213:-1:exon
subclass of: SO_0000010

position:65393:-1
position: 65393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:67213:-1
position: 67213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65393-67213:-1:exon

SGP1_RS22460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22460
old locus tag: SGP1_0041
function: putative siderophore synthetase component
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007249607.1
GO process: GO:0019290 - siderophore biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IucA/IucC family protein
translation: MSDARALSYSDWLTASNASRLQQVEQRVVGQLLQTLLYEQVVPYQRQVLAGKQQRFIIASELGVEYHCNGLQSASFDLIRLDYATLERIDADGQRSSPKLHQALSELLSGVQDSPHFPSFINELEQTLLKDLQSRSLGYRPDKPAHRLDVDALEQHFMDAHCYHPCYKSRIGFSLQHNAQYGPEFAAPIAIVWLALAKSRASVNYAEHIDIDDFMQREAGVPYAEILRQQGKDPQDYCLIPVHPWQWQQVIVTTFYPELLSGELVWLGESRDRYQAQQSIRTMANVSDKTRPYVKLAMSMTNTSSTRILARHTVMNGPIITSWLQQLISRDETARALDFVILREVVGASFDYQPLPESRMTQTYGTFGAIWRESLHQYLRADEQAVPFNGLSHVENRYGDGEQRPFIDAWVARYGLEAWSRKLLQVSVQPIIHMLYAEGIGMESHGQNIVLIVKDGWPVRIALKDFHDGVRYSSDHLAHPELQPDLVPLPASHAKINRNSFILTDDVDAVRDFSCDSFFFICLAEMAIFLQQHYQLDESDFWRMTADIIVDYQQRHPQHRVRYATFDVFALHYEVEELTKRRLLGDAERRFKSVPNPLHTFRPTAC
SIO_010081: SGP1_RS22460
subclass of: SO_0000673
so part of: SGP1_RS22460
location: complement(65393..67213)
location: region:65393-67213:-1
so has part: feature:65393-67213:-1:exon

WP_011279190.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:65393-67213:-1:exon

SGP1_RS22465
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22465
old locus tag: SGP1_0042
so part of: sequence
location: complement(67227..68615)
location: region:67227-68615:-1
so has part: feature:67227-68615:-1:exon
subclass of: SO_0000010

position:67227:-1
position: 67227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:68615:-1
position: 68615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:67227-68615:-1:exon

SGP1_RS22465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22465
old locus tag: SGP1_0042
function: putative permeases of the major facilitator superfamily
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008145613.1
GO component: GO:0005886 - plasma membrane [Evidence IEA]
GO process: GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DHA2 family efflux MFS transporter permease subunit
translation: MGVTPRLVAVNVLLGTLTVSLNNSSLNPALPAFIAAFSLGPVSASWIVAAFMASMGLTMPLTGYLSQRLGRKPLYLVALALFVAGSLVGALATSIGGVIAARVVQGIASGLMIPLALAIIFSMYAKEERGRVTGWWAAAVMLAPALGPLLGSLVLSWFDWRALFLINVPVGVLALLMGVWVLPSSTAAAGKTFDSVGYLLVACGIGLLLLLCGRLHQLSALREPLNLLMLLGALLCLAQFVRHELRVPEPLLNLRLFALRDYRLSVLLAVVQAVGMFECLVLLPLLVQMVLGYSPIYTGLALLGTALFASLFGQFGGRILDRHGPRTLVLTGMLLTGTATLGLGLLGNGSALWPVFVLMILRGAGLGLSYMPVTTTGLNALPEDMVTQGAAMNNISRRLISSLAIVLASLWLQYRLVGSTDYTAAVSETFIATGLLILLTAPCAWRFSRVEKLAVDKAPNFH
SIO_010081: SGP1_RS22465
subclass of: SO_0000673
so part of: SGP1_RS22465
location: complement(67227..68615)
location: region:67227-68615:-1
so has part: feature:67227-68615:-1:exon

WP_011279191.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:67227-68615:-1:exon

SGP1_RS22470
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22470
old locus tag: SGP1_0043
so part of: sequence
location: complement(68606..69811)
location: region:68606-69811:-1
so has part: feature:68606-69811:-1:exon
subclass of: SO_0000010

position:68606:-1
position: 68606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:69811:-1
position: 69811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68606-69811:-1:exon

SGP1_RS22470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22470
old locus tag: SGP1_0043
function: putative diaminopimelate decarboxylase
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003372851.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type III PLP-dependent enzyme
translation: MTELPVRVVAAIAQARQQQDDPLAMFIYDLAALQQHIRQVMEALPDGAELYYAIKANSEPQILQTLAPWVDGFEISSGGEIERLQAAGSDKPFVFSGPGKLDSDLRAALRRQAAAIHVESLNEIDRLQRLAREQGRVQTVLIRINPQLPAQISSRLAMAGTATPFGIDEADLAVAVHRVDNADHLVLQGFHVHAMSHQQSEQRHRQLMEYYLQRWPQWKALSAQQEGITHLNVGGGIGVDYLSTSQFDWPGFCHWLGELLAVTAGAPRLRFEPGRFISAFCGYYAIEILDQKTSHGKHFLVCRGGTHQFRLPVAQGHDHPIIHLPQRSDGAGELCAWTVVGQLCTPKDVLSRDCSLKGVAIGDMLVLPLAGAYGYNISHADFLCHPRPCQLFLPLETASWA
SIO_010081: SGP1_RS22470
subclass of: SO_0000673
so part of: SGP1_RS22470
location: complement(68606..69811)
location: region:68606-69811:-1
so has part: feature:68606-69811:-1:exon

WP_011279192.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:68606-69811:-1:exon

SGP1_RS22475
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22475
old locus tag: SGP1_0044
so part of: sequence
location: complement(69804..71588)
location: region:69804-71588:-1
so has part: feature:69804-71588:-1:exon
subclass of: SO_0000010

position:69804:-1
position: 69804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:71588:-1
position: 71588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69804-71588:-1:exon

SGP1_RS22475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22475
old locus tag: SGP1_0044
function: putative siderophore synthetase component
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017131160.1
GO process: GO:0019290 - siderophore biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IucA/IucC family protein
translation: MKNPESAIIPRLVSEQASTHALLNCLIKEFALPEGGLHYCWPQQMQGITPSHCLQAIRHGGMPLCIQLSDAWQCFVLVDRRDALGSQRYLSDVYTRQGDADWSAPDFATLVAQILAGCQQRVGGDNHELPQQIEQSQRLTARILVHNLHQDVQHPLTDYLASEQGLWFGHPSHPAPKARLWPEDLAQETFAPEFQAMTALHQFAVPQEGLIVYGNGLTAQQVLAGFADQRQAADGQAIIVMHPVQARLFLQDPRVQQLLAQGQITDLGPSGFRAAPTASIRTWYLAQHDYFIKGSLNVRITNCVRKNAWYELESTMIIDRLFRRLKQTASDTLEGLTAVAEPGVLSWSPRIASESDRNWFREQTGAILRENFCRQYGEENCLMAGTLFARDGQLQPLIRQVLQQCYGSTLSDDQRLQWFADYQRLLLGPVLALFFNHGIVMEPHLQNTVLVHHQGRPQQVLLRDFEGVKLTDDLGICQVELDIHPRVRQSLLYSREQGWQRIMYCLFINNLSEAVLALSWQRPAMASQMWQQVWAQLQQIQRRLRAPAPELAALIAGGPISCKTNLKVRLAAQADRQAGYVPLPSPWRQAVVHD
SIO_010081: SGP1_RS22475
subclass of: SO_0000673
so part of: SGP1_RS22475
location: complement(69804..71588)
location: region:69804-71588:-1
so has part: feature:69804-71588:-1:exon

WP_011279193.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:69804-71588:-1:exon

SGP1_RS22480
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22480
old locus tag: SGP1_0045
so part of: sequence
location: complement(71626..73731)
location: region:71626-73731:-1
so has part: feature:71626-73731:-1:exon
subclass of: SO_0000010

position:71626:-1
position: 71626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:73731:-1
position: 73731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71626-73731:-1:exon

SGP1_RS22480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22480
old locus tag: SGP1_0045
function: putative ferric aerobactin receptor
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012885243.1
GO function: GO:0015267 - channel activity [Evidence IEA]
GO process: GO:0015891 - siderophore transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TonB-dependent receptor
translation: MKVRALCSLMPLLLTAPLYAEDATEDNGDYMVITASRTATQKKDSPQVVTVISKQQIEQQRQITSDTSQILSNLLPAFSPSRQKMSGSGETFRGRTPLVLIDGIPQSNPLRPTGREMHTVDASMIERIEVIHGANASNGIGASGGVINIITKRPEPGSFNQHFSVEATTPTSQLKSDTMSYKTTYGFDGREDYIDYLFSMSYEDQGVYLDGNNQPVGVDNTQGDLMNSRAYDLLGKIDYWLDDNQHIQLSINRYHLKGKNDYVSVTGEREQGIPTTSVKGTPEGEAPFNSVWTTGVTYDNYDLAGMKFNALAYYQDYEALFGSTLSGTFQDPEIAPVGTLYDQSRAVTSKYGTKMSLIKDDLWDDRLKVTLGFDTLFDSSKQDLWGTHRTYVPEVKYTDLSPFVQLEVAPLESVKLFGGVRYEYARLKVDNYQTLAASNSVTVEGGEPSFNKTLYNIAAVWTPIEPLSLFANYSQGFSMPDVGRVLRGINLPGMSVDSFLNLQPIVTNNTEVGFRVEKAPVDLEVSYYKSTSKLGSRVVRQGDVFVAKRQRTEIDGVEAAAGYNLTENHRMKLSYSHMRGRYDSDGDGSLDAKLDGLNVSPDRIIASWSANWTPQWSSFVQANWALSRDFDEEDKDFSGYALVDAAVGYKLPGKRGQLSLAVSNLLDKQYITYYSQSALVKDDRYFAGRGRTLTLGYRIDF
SIO_010081: SGP1_RS22480
subclass of: SO_0000673
so part of: SGP1_RS22480
location: complement(71626..73731)
location: region:71626-73731:-1
so has part: feature:71626-73731:-1:exon

WP_011279194.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:71626-73731:-1:exon

SGP1_RS22485
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22485
old locus tag: SGP1_0046
so part of: sequence
location: complement(73835..75211)
location: region:73835-75211:-1
so has part: feature:73835-75211:-1:exon
subclass of: SO_0000010

position:73835:-1
position: 73835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:75211:-1
position: 75211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73835-75211:-1:exon

SGP1_RS22485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22485
old locus tag: SGP1_0046
EC number: 2.6.1.76
function: putative 4-aminobutyrate aminotransferase
inference: COORDINATES: protein motif:HMM:NF005386.0
GO function: GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
GO process: GO:0009058 - biosynthetic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: diaminobutyrate--2-oxoglutarate transaminase
translation: MYRKELLLVCQPCEKNLDYLTRQARFESNVRSYPRKLPLAIARAQGCWVTDVEGKRYLDCLAGAGTLALGHNHEAVVGAIQQFLASGLPMHTLDLTTPLKDAFSERVLSLLPAEGQDYCLQFCGPSGADAVEAALKLAKTVTGRSNVISFSGGYHGMTHGALSVTGNIGPKEALHGLMSGVQFFPYPHQYRCPLGIGGQRGEQALSHYFSQFIEDVESGVARPAAVILEAIQGEGGVNPAPVEWLRQVRTVTEKHGILLIVDEVQCGFARTGDMFAYQYAGIEPDIVVMSKAVGGGLPMALLGIKRGFDAWQPGAHTGTFRGNQMAMATGMATLNMLVGENIAAQAAQRGAWLQQQLNALRQRYPALGQVRGRGLMLGIEIVDERQPADALGSYPMDAPLAVAIQQHCFQQGLLLERGGRHGNVVRLLPPLTINEQECQSVIDRFTLALNGALVTSRC
SIO_010081: SGP1_RS22485
subclass of: SO_0000673
so part of: SGP1_RS22485
location: complement(73835..75211)
location: region:73835-75211:-1
so has part: feature:73835-75211:-1:exon

WP_011279195.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:73835-75211:-1:exon

SGP1_RS30455
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS30455
pseudo: true
so part of: sequence
location: complement(<75451..>75603)
location: region:75451-75603:-1
so has part: feature:75451-75603:-1:exon
subclass of: SO_0000010

position:75451:-1
position: 75451
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:75603:-1
position: 75603
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75451-75603:-1:exon

SGP1_RS30455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS30455
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011410900.1
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5/IS1182 family transposase
SIO_010081: SGP1_RS30455
subclass of: SO_0000673
so part of: SGP1_RS30455
location: complement(<75451..>75603)
location: region:75451-75603:-1
so has part: feature:75451-75603:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:75451-75603:-1:exon

SGP1_RS28730
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS28730
pseudo: true
so part of: sequence
location: 75653..76869
location: region:75653-76869:1
so has part: feature:75653-76869:1:exon
subclass of: SO_0000010

position:75653:1
position: 75653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:76869:1
position: 76869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75653-76869:1:exon

SGP1_RS28730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS28730
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611812.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS3 family transposase
SIO_010081: SGP1_RS28730
subclass of: SO_0000673
so part of: SGP1_RS28730
location: 75653..76869
location: region:75653-76869:1
so has part: feature:75653-76869:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:75653-76869:1:exon

SGP1_RS28730
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 343509
locus tag: SGP1_RS28730
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF01497
inference: COORDINATES: profile:INFERNAL:1.1.4
note: AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: SGP1_RS28730
subclass of: SO_0000673
so part of: SGP1_RS28730
location: 75931..76047
location: region:75931-76047:1
so has part: feature:75931-76047:1:exon

position:75931:1
position: 75931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:76047:1
position: 76047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75931-76047:1:exon

SGP1_RS22505
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22505
so part of: sequence
location: 77329..77673
location: region:77329-77673:1
so has part: feature:77329-77673:1:exon
subclass of: SO_0000010

position:77329:1
position: 77329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:77673:1
position: 77673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77329-77673:1:exon

SGP1_RS22505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22505
inference: COORDINATES: protein motif:HMM:NF022590.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2913 family protein
translation: MLQKLPPQETTNDLSHLAFCALVALHLARQDGVASSPYAENLFLVRWLAQAQKQKHFPKSVAIDIGYLLEKGRRQSPASKLKQRLEYLWQSCTGEVTEQSDLFQLTFATENLKD
SIO_010081: SGP1_RS22505
subclass of: SO_0000673
so part of: SGP1_RS22505
location: 77329..77673
location: region:77329-77673:1
so has part: feature:77329-77673:1:exon

WP_050747956.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:77329-77673:1:exon

SGP1_RS22510
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22510
old locus tag: SGP1_0050
pseudo: true
so part of: sequence
location: 77834..78699
location: region:77834-78699:1
so has part: feature:77834-78699:1:exon
subclass of: SO_0000010

position:77834:1
position: 77834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:78699:1
position: 78699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77834-78699:1:exon

SGP1_RS22510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22510
old locus tag: SGP1_0050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_032491235.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5 family transposase
SIO_010081: SGP1_RS22510
subclass of: SO_0000673
so part of: SGP1_RS22510
location: 77834..78699
location: region:77834-78699:1
so has part: feature:77834-78699:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:77834-78699:1:exon

SGP1_RS22515
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22515
old locus tag: SGP1_0051
so part of: sequence
location: complement(79259..79750)
location: region:79259-79750:-1
so has part: feature:79259-79750:-1:exon
subclass of: SO_0000010

position:79259:-1
position: 79259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:79750:-1
position: 79750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79259-79750:-1:exon

SGP1_RS22515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22515
old locus tag: SGP1_0051
function: putative heat shock protein
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015873678.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Hsp20 family protein
translation: MAYRSFSLMPTLSNSLLTDRFTQMDNLFSRLTGEKPLSDTPAYNLLKNSEQHELTVSVPGYAQDELDVSVLNNQLTVRGKPNVEKTDEAEEKEGIKWLHQGIRKSEFVLSFTLEHRIVIQQANLANGLLTLHFTYDIPEQEKPQQIAIGIQNESGRVLEHNAT
SIO_010081: SGP1_RS22515
subclass of: SO_0000673
so part of: SGP1_RS22515
location: complement(79259..79750)
location: region:79259-79750:-1
so has part: feature:79259-79750:-1:exon

WP_011279200.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:79259-79750:-1:exon

SGP1_RS31070
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
gene: pilV
locus tag: SGP1_RS31070
so part of: sequence
location: 79850..80665
location: region:79850-80665:1
so has part: feature:79850-80665:1:exon
subclass of: SO_0000010

position:79850:1
position: 79850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80665:1
position: 80665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79850-80665:1:exon

SGP1_RS31070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
gene: pilV
locus tag: SGP1_RS31070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016857956.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II secretion system F family protein
translation: MSPSLTSAIIAVKPRIAVTARWIYQKTFSAKDRIAFYDMLAFLLDNNKSLQQALIDMRNVVTDFGRKHHPYAVLLTDCLSTLDEGQGAFEKVLLEWVPVQEATLIGSGILYGKLSDTLRRASQFNESAKQYIADHRDELLNQPLPYRITPSLLIKNGYLQQGFAEKNGLGQQYVTGVVKNNQKNPVRYRRSPVAYRVIPCQRKECAALPPRSPAWMGLLMRKISPTALMADGQASRVILASTAATDILLLRYRRKFWVAYCRKATGFTDLR
SIO_010081: SGP1_RS31070
subclass of: SO_0000673
so part of: SGP1_RS31070
location: 79850..80665
location: region:79850-80665:1
so has part: feature:79850-80665:1:exon

WP_158302483.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:79850-80665:1:exon

SGP1_RS25305
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
gene: pilV
locus tag: SGP1_RS25305
so part of: sequence
location: 80689..80931
location: region:80689-80931:1
so has part: feature:80689-80931:1:exon
subclass of: SO_0000010

position:80689:1
position: 80689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80931:1
position: 80931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:80689-80931:1:exon

SGP1_RS25305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
gene: pilV
locus tag: SGP1_RS25305
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: shufflon system plasmid conjugative transfer pilus tip adhesin PilV
translation: MYTYIDMGGNNLNNTNAVNAKNGHYSEEINTGGNIKTQGGWMITQHGKGWLNEAHGGGFYMTITTGYAQSTTRGFIPGVN
SIO_010081: SGP1_RS25305
subclass of: SO_0000673
so part of: SGP1_RS25305
location: 80689..80931
location: region:80689-80931:1
so has part: feature:80689-80931:1:exon

WP_050747957.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:80689-80931:1:exon

SGP1_RS28745
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS28745
old locus tag: SGP1_0053
so part of: sequence
location: 81710..82003
location: region:81710-82003:1
so has part: feature:81710-82003:1:exon
subclass of: SO_0000010

position:81710:1
position: 81710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:82003:1
position: 82003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81710-82003:1:exon

SGP1_RS28745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS28745
old locus tag: SGP1_0053
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002353191.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YggA protein
translation: MKKKTLMAIGLLLAVNHAALADEKVDSGDPCTIVLCMYGKLHGNNQSECNGAVSQFGRHDFDPWKTFVKRRDFLGGCPTADPAIVGDIMKRFGKMRG
SIO_010081: SGP1_RS28745
subclass of: SO_0000673
so part of: SGP1_RS28745
location: 81710..82003
location: region:81710-82003:1
so has part: feature:81710-82003:1:exon

WP_011279201.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:81710-82003:1:exon

SGP1_RS22535
type: Gene
subclass of: SO_0000704
RO_0002162: 343509
locus tag: SGP1_RS22535
old locus tag: SGP1_0054
so part of: sequence
location: 82726..83202
location: region:82726-83202:1
so has part: feature:82726-83202:1:exon
subclass of: SO_0000010

position:82726:1
position: 82726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:83202:1
position: 83202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82726-83202:1:exon

SGP1_RS22535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 343509
locus tag: SGP1_RS22535
old locus tag: SGP1_0054
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTPLFLVNTHNLLQVTVIYFMFRNVYQTMTRRILYTEAWIEKERGFFSFYATWTFPTKTERGFIMTAGEFRVCKGGLIEFDKKDDDVKHFALVCRYLAQMLRKMSYEDEKVYFEKKSSPLFNGVWLNSDFIERRQRAIEVDGKVKPVWISYKHYLPTH
SIO_010081: SGP1_RS22535
subclass of: SO_0000673
so part of: SGP1_RS22535
location: 82726..83202
location: region:82726-83202:1
so has part: feature:82726-83202:1:exon

WP_011412269.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:82726-83202:1:exon