Moraxella osloensis strain CCUG 350 plasmid unnamed2, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Moraxella.
Submitted (02-FEB-2016) Alkek Center for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP014237.1.\nSource DNA and bacterial cultures: T. A. Joyce and F. E. Dewhirst\nDirect requests to the Human Oral Microbiome Project, The Forsyth\nInstitute, 245 First Street, Cambridge, MA, 02142, USA.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Analysis RS_HGAP_Assembly.2 v.\n 2.3.0.140936.p4.150482\nAssembly Name :: CCUG350_Moaxella_osloensis\nGenome Coverage :: 238x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 20:41:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,378\nCDSs (total) :: 2,315\nGenes (coding) :: 2,256\nCDSs (with protein) :: 2,256\nGenes (RNA) :: 63\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 4\nPseudo Genes (total) :: 59\nCDSs (without protein) :: 59\nPseudo Genes (ambiguous residues) :: 0 of 59\nPseudo Genes (frameshifted) :: 16 of 59\nPseudo Genes (incomplete) :: 44 of 59\nPseudo Genes (internal stop) :: 5 of 59\nPseudo Genes (multiple problems) :: 6 of 59\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_017392340.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
class I SAM-dependent DNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_017411316.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF023154.2
COORDINATES: similar to AA sequence:RefSeq:WP_020563558.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005201474.1
COORDINATES: similar to AA sequence:RefSeq:WP_004889338.1
COORDINATES: similar to AA sequence:RefSeq:WP_002061839.1
COORDINATES: similar to AA sequence:RefSeq:WP_011794855.1
COORDINATES: similar to AA sequence:RefSeq:WP_007117328.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012748373.1
GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005225344.1
COORDINATES: similar to AA sequence:RefSeq:WP_009736064.1
GO:0008851 - ethanolamine ammonia-lyase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004830739.1
COORDINATES: similar to AA sequence:RefSeq:WP_005110703.1
CoA-acylating methylmalonate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_016140868.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015242088.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_003891631.1
COORDINATES: similar to AA sequence:RefSeq:WP_006676120.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013775.2
COORDINATES: protein motif:HMM:NF024039.2
COORDINATES: similar to AA sequence:RefSeq:WP_011961263.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005155981.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004668589.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007116188.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]