Paracoccus aminovorans isolate JCM7685 plasmid II, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Paracoccus.
Submitted (31-MAR-2015) CEBITEC, Genome Research of Industrial Microorganisms (GRIM), Universitaetsstrasse 27, 33615, NRW, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nLN832560.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/25/2022 02:10:07\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,943\nCDSs (total) :: 3,881\nGenes (coding) :: 3,739\nCDSs (with protein) :: 3,739\nGenes (RNA) :: 62\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 142\nCDSs (without protein) :: 142\nPseudo Genes (ambiguous residues) :: 0 of 142\nPseudo Genes (frameshifted) :: 68 of 142\nPseudo Genes (incomplete) :: 102 of 142\nPseudo Genes (internal stop) :: 29 of 142\nPseudo Genes (multiple problems) :: 45 of 142\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_018001704.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011751253.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001702.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_009451474.1
GO:0046421 - methylisocitrate lyase activity [Evidence IEA]
GO:0019629 - propionate catabolic process, 2-methylcitrate cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011747669.1
GO:0050440 - 2-methylcitrate synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011747670.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747671.1
COORDINATES: similar to AA sequence:RefSeq:WP_013069041.1
short-chain fatty acyl-CoA regulator family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008128177.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001701.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001700.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001699.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011747687.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_007631331.1
COORDINATES: similar to AA sequence:RefSeq:WP_020051492.1
COORDINATES: similar to AA sequence:RefSeq:WP_008536343.1
COORDINATES: similar to AA sequence:RefSeq:YP_002517214.1
GO:0004451 - isocitrate lyase activity [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011747683.1
GO:0004474 - malate synthase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010141169.1
COORDINATES: similar to AA sequence:RefSeq:WP_002722925.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749409.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011749695.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013384101.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018001568.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001567.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611390.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017846301.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001561.1
COORDINATES: protein motif:HMM:NF021520.2
COORDINATES: similar to AA sequence:RefSeq:WP_014189248.1
GO:0017013 - protein flavinylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018000771.1
nitrous oxide reductase accessory protein NosL
COORDINATES: similar to AA sequence:RefSeq:WP_012093627.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018000769.1
COORDINATES: protein motif:HMM:TIGR04247.1
nitrous oxide reductase family maturation protein NosD
COORDINATES: similar to AA sequence:RefSeq:WP_010660650.1
GO:0050304 - nitrous-oxide reductase activity [Evidence IEA]
GO:0019333 - denitrification pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018000766.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396593.1
dicarboxylate/amino acid:cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_018001558.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396590.1
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018001556.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001555.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014129413.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008886522.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001542.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003528599.1
COORDINATES: similar to AA sequence:RefSeq:WP_005864202.1
COORDINATES: protein motif:HMM:TIGR03354.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system-associated FHA domain protein TagH
COORDINATES: protein motif:HMM:NF018516.2
type VI secretion system ImpA family N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016843425.1
type VI secretion system contractile sheath small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018001532.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
type VI secretion system contractile sheath large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018001531.1
type VI secretion system tube protein Hcp
COORDINATES: protein motif:HMM:NF016829.2
type VI secretion system baseplate subunit TssE
COORDINATES: similar to AA sequence:RefSeq:WP_018001529.1
type VI secretion system baseplate subunit TssF
COORDINATES: protein motif:HMM:TIGR03347.1
type VI secretion system baseplate subunit TssG
COORDINATES: similar to AA sequence:RefSeq:WP_018001527.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014525.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018001523.1
MotA/TolQ/ExbB proton channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018001521.1
COORDINATES: protein motif:HMM:NF013700.2
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018001518.1
type VI secretion system baseplate subunit TssK
COORDINATES: protein motif:HMM:NF038228.1
type VI secretion system protein TssL, long form
COORDINATES: protein motif:HMM:TIGR03348.1
type VI secretion system membrane subunit TssM
COORDINATES: protein motif:HMM:TIGR03373.1
type VI secretion system-associated protein TagF
COORDINATES: protein motif:HMM:NF012693.2
protein phosphatase 2C domain-containing protein
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: protein motif:HMM:NF016464.2
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007677592.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001494.1
GO:0032955 - regulation of division septum assembly [Evidence IEA]
cell division topological specificity factor MinE
COORDINATES: similar to AA sequence:RefSeq:WP_018001493.1
GO:0000918 - division septum site selection [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018001492.1
GO:0004857 - enzyme inhibitor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018001491.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011751328.1
GO:0008773 - [protein-PII] uridylyltransferase activity [Evidence IEA]
putative nucleotidyltransferase substrate binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011751329.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001487.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751331.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001485.1
GO:0004527 - exonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003499509.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_018001483.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001482.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015344 - siderophore uptake transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
FepA family TonB-dependent siderophore receptor
COORDINATES: similar to AA sequence:RefSeq:WP_018001481.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611355.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018302939.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747520.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747519.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014331022.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396360.1
proline/glycine betaine ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_011747518.1
glycine betaine/L-proline ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018001498.1
pyrroline-5-carboxylate reductase dimerization domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018001635.1
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018071515.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672843.1
COORDINATES: similar to AA sequence:RefSeq:WP_018071511.1
COORDINATES: similar to AA sequence:RefSeq:WP_007627289.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672846.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503501.1
COORDINATES: similar to AA sequence:RefSeq:WP_008759548.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001652.1
FMN-binding glutamate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018001653.1
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018001654.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018001655.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294533.1
COORDINATES: similar to AA sequence:RefSeq:WP_013896789.1
COORDINATES: similar to AA sequence:RefSeq:WP_018325791.1
COORDINATES: similar to AA sequence:RefSeq:WP_019856865.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001660.1
dimethylamine monooxygenase subunit DmmA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018001661.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001662.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001663.1
COORDINATES: similar to AA sequence:RefSeq:WP_008559410.1
GO:0008115 - sarcosine oxidase activity [Evidence IEA]
GO:0046653 - tetrahydrofolate metabolic process [Evidence IEA]
sarcosine oxidase subunit beta family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018001665.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001666.1
sarcosine oxidase subunit alpha family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018001667.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001196.1
GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD
COORDINATES: similar to AA sequence:RefSeq:WP_018001668.1
GO:0008864 - formyltetrahydrofolate deformylase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018001669.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001670.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001671.1
COORDINATES: similar to AA sequence:RefSeq:WP_010443363.1
GO:0008964 - phosphoenolpyruvate carboxylase activity [Evidence IEA]
GO:0015977 - carbon fixation [Evidence IEA]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009760129.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001674.1
COORDINATES: similar to AA sequence:RefSeq:WP_009157463.1
COORDINATES: similar to AA sequence:RefSeq:WP_008034792.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_009760125.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001678.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001679.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001680.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011750828.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
putative DNA modification/repair radical SAM protein
COORDINATES: similar to AA sequence:RefSeq:WP_011750829.1
This protein belongs to the uracil DNA glycosylase superfamily, members of which act in excision repair of DNA. However, it belongs more specifically to UdgX branch, whose founding member was found to bind uracil in DNA (where it does not belong), without cleaving it, appears to promote DNA repair by a pathway involving RecA, rather than base excision; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013368459.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010967661.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000775.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018000776.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011567823.1
COORDINATES: similar to AA sequence:RefSeq:WP_011567810.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000763.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_018000762.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000761.1
COORDINATES: similar to AA sequence:RefSeq:WP_010443116.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396567.1
COORDINATES: similar to AA sequence:RefSeq:WP_020818174.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0008941 - nitric oxide dioxygenase activity [Evidence IEA]; GO:0019825 - oxygen binding [Evidence IEA]
GO:0051409 - response to nitrosative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011747985.1