Paracoccus alcaliphilus strain TK 1015 = DSM 8512 plasmid p402633, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Paracoccus.
Biogeographic distribution of Paracoccus
Submitted (05-JAN-2021) Genomic and Applied Microbiology & Goettingen Genomics Laboratory, Georg-August-University Goettingen, Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP067126.1.\nBacteria and source DNA available from Prof. Dr. Thorsten\nBrinkhoff, ICMB, University Oldenburg.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 26-NOV-2020\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 148.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/09/2023 17:10:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,800\nCDSs (total) :: 4,744\nGenes (coding) :: 4,523\nCDSs (with protein) :: 4,523\nGenes (RNA) :: 56\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 3\nPseudo Genes (total) :: 221\nCDSs (without protein) :: 221\nPseudo Genes (ambiguous residues) :: 0 of 221\nPseudo Genes (frameshifted) :: 75 of 221\nPseudo Genes (incomplete) :: 180 of 221\nPseudo Genes (internal stop) :: 34 of 221\nPseudo Genes (multiple problems) :: 61 of 221\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013385643.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011749186.1
ParB N-terminal domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017928954.1
sulfite exporter TauE/SafE family protein
COORDINATES: protein motif:HMM:NF022760.2
COORDINATES: similar to AA sequence:RefSeq:WP_013532307.1
zinc ABC transporter ATP-binding protein AztA
COORDINATES: similar to AA sequence:RefSeq:WP_011747895.1
COORDINATES: similar to AA sequence:RefSeq:WP_016914656.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0008270 - zinc ion binding [Evidence IEA]
GO:0055069 - zinc ion homeostasis [Evidence IEA]
zinc ABC transporter substrate-binding protein AztC
COORDINATES: similar to AA sequence:RefSeq:WP_013383481.1
COORDINATES: protein motif:HMM:NF015763.2
COORDINATES: protein motif:HMM:NF017985.2
COORDINATES: similar to AA sequence:RefSeq:WP_028714619.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611946.1
IS5-like element ISPpa3 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_018714054.1
thiosulfate oxidation carrier complex protein SoxZ
COORDINATES: similar to AA sequence:RefSeq:WP_014428230.1
thiosulfate oxidation carrier protein SoxY
COORDINATES: similar to AA sequence:RefSeq:WP_018574230.1
COORDINATES: similar to AA sequence:RefSeq:WP_012839631.1
COORDINATES: similar to AA sequence:RefSeq:WP_012839630.1
COORDINATES: similar to AA sequence:RefSeq:WP_020230684.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004690148.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006469497.1
COORDINATES: similar to AA sequence:RefSeq:WP_019965166.1
COORDINATES: similar to AA sequence:RefSeq:WP_006469499.1
COORDINATES: similar to AA sequence:RefSeq:WP_006469500.1
COORDINATES: similar to AA sequence:RefSeq:WP_005605897.1
COORDINATES: similar to AA sequence:RefSeq:WP_018322084.1
COORDINATES: similar to AA sequence:RefSeq:WP_018647031.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019965172.1
COORDINATES: similar to AA sequence:RefSeq:WP_006473198.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750623.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011750624.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015888027.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
FAD-linked oxidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010661495.1
COORDINATES: similar to AA sequence:RefSeq:WP_007814135.1
COORDINATES: similar to AA sequence:RefSeq:WP_008280470.1
GO:0004474 - malate synthase activity [Evidence IEA]
GO:0006097 - glyoxylate cycle [Evidence IEA]
COORDINATES: protein motif:HMM:NF036823.2
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: similar to AA sequence:RefSeq:WP_017998877.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747023.1
COORDINATES: similar to AA sequence:RefSeq:WP_008279263.1
GO:0036361 - racemase activity, acting on amino acids and derivatives [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011747025.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400160.1
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004313076.1
COORDINATES: similar to AA sequence:RefSeq:WP_011237810.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400163.1
GO:0008773 - [protein-PII] uridylyltransferase activity [Evidence IEA]
DUF294 nucleotidyltransferase-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011750778.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400165.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400167.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013122.2
COORDINATES: similar to AA sequence:RefSeq:WP_017277393.1
COORDINATES: similar to AA sequence:RefSeq:WP_005967038.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015317318.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011512913.1
with MacA is involved in the export of macrolide; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
macrolide ABC transporter permease/ATP-binding protein MacB
COORDINATES: similar to AA sequence:RefSeq:WP_018304730.1
COORDINATES: similar to AA sequence:RefSeq:WP_014198211.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016920721.1
COORDINATES: similar to AA sequence:RefSeq:WP_007878121.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611920.1
GO:0015074 - DNA integration [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_014821172.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750584.1
COORDINATES: similar to AA sequence:RefSeq:WP_017999862.1
COORDINATES: similar to AA sequence:RefSeq:WP_003534212.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
glycine cleavage T C-terminal barrel domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012333088.1
GO:0015297 - antiporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012331439.1
COORDINATES: similar to AA sequence:RefSeq:WP_012113264.1
COORDINATES: similar to AA sequence:RefSeq:WP_008758980.1
COORDINATES: similar to AA sequence:RefSeq:WP_020178648.1
COORDINATES: similar to AA sequence:RefSeq:WP_009817973.1
COORDINATES: similar to AA sequence:RefSeq:WP_011046107.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013382960.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
ADP-forming succinate--CoA ligase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_007672430.1
COORDINATES: similar to AA sequence:RefSeq:WP_020173438.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0008949 - oxalyl-CoA decarboxylase activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
GO:0033611 - oxalate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007672434.1
GO:0033608 - formyl-CoA transferase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0033611 - oxalate catabolic process [Evidence IEA]; GO:0009636 - response to toxic substance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008142035.1
COORDINATES: similar to AA sequence:RefSeq:WP_008182253.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010396021.1
putative sulfate exporter family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_004260914.1
mechanosensitive ion channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010397930.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006725359.1
four-carbon acid sugar kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020009129.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397934.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010397935.1
GO:0050570 - 4-hydroxythreonine-4-phosphate dehydrogenase activity [Evidence IEA]
GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
4-hydroxythreonine-4-phosphate dehydrogenase PdxA
COORDINATES: similar to AA sequence:RefSeq:WP_010397936.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397938.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397940.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480302.1
COORDINATES: similar to AA sequence:RefSeq:WP_003532053.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397948.1
COORDINATES: similar to AA sequence:RefSeq:WP_010350083.1
COORDINATES: similar to AA sequence:RefSeq:WP_015460228.1
GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA]
GO:0019419 - sulfate reduction [Evidence IEA]
sulfate adenylyltransferase subunit CysD
COORDINATES: similar to AA sequence:RefSeq:WP_007709140.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
sulfate adenylyltransferase subunit CysN
COORDINATES: similar to AA sequence:RefSeq:WP_010973745.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748449.1
GO:0005515 - protein binding [Evidence IEA]; GO:0004856 - xylulokinase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0005997 - xylulose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010973746.1
COORDINATES: similar to AA sequence:RefSeq:WP_003518204.1
COORDINATES: similar to AA sequence:RefSeq:WP_020010194.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006315915.1
COORDINATES: similar to AA sequence:RefSeq:WP_013762241.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748443.1
COORDINATES: similar to AA sequence:RefSeq:WP_003498880.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001536.1
COORDINATES: protein motif:HMM:TIGR03354.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system-associated FHA domain protein TagH
COORDINATES: protein motif:HMM:NF018516.2
type VI secretion system ImpA family N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016843425.1
type VI secretion system contractile sheath small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018001532.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
type VI secretion system contractile sheath large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018001531.1
type VI secretion system tube protein Hcp
COORDINATES: protein motif:HMM:NF016829.2
COORDINATES: similar to AA sequence:RefSeq:WP_018001529.1
type VI secretion system baseplate subunit TssF
COORDINATES: protein motif:HMM:TIGR03347.1
type VI secretion system baseplate subunit TssG
COORDINATES: similar to AA sequence:RefSeq:WP_018318183.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005861587.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_018066192.1
COORDINATES: similar to AA sequence:RefSeq:WP_018066191.1
COORDINATES: similar to AA sequence:RefSeq:WP_018066190.1
COORDINATES: similar to AA sequence:RefSeq:WP_018066189.1
COORDINATES: similar to AA sequence:RefSeq:WP_005861577.1
GO:0019213 - deacetylase activity [Evidence IEA]; GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
amidohydrolase/deacetylase family metallohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_005861575.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448592.1
COORDINATES: similar to AA sequence:RefSeq:WP_018066185.1
COORDINATES: similar to AA sequence:RefSeq:WP_009566105.1
COORDINATES: similar to AA sequence:RefSeq:WP_013331236.1
GO:0000287 - magnesium ion binding [Evidence IEA]
RuBisCO large subunit C-terminal-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012747079.1
COORDINATES: similar to AA sequence:RefSeq:WP_009566101.1
COORDINATES: similar to AA sequence:RefSeq:WP_009566099.1
COORDINATES: similar to AA sequence:RefSeq:WP_009566098.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009566097.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008203976.1
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF021616.2
COORDINATES: similar to AA sequence:RefSeq:WP_017998981.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010137761.1
bile acid:sodium symporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008027741.1
COORDINATES: similar to AA sequence:RefSeq:WP_008229794.1
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018634271.1
GO:0004125 - L-seryl-tRNASec selenium transferase activity [Evidence IEA]
GO:0016260 - selenocysteine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018634270.1
formate dehydrogenase accessory protein FdhE
COORDINATES: similar to AA sequence:RefSeq:WP_018633723.1
GO:0009326 - formate dehydrogenase complex [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0009061 - anaerobic respiration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010392084.1
GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0045333 - cellular respiration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013168279.1
GO:0015942 - formate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011750981.1
COORDINATES: similar to AA sequence:RefSeq:WP_009565270.1
COORDINATES: similar to AA sequence:RefSeq:WP_013383351.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859358.1
COORDINATES: similar to AA sequence:RefSeq:WP_020288157.1
GO:0070967 - coenzyme F420 binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
TIGR03842 family LLM class F420-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_008546587.1
GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558302.1
GO:0043773 - coenzyme F420-0 gamma-glutamyl ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03552.1
GO:0043814 - phospholactate guanylyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011747444.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747443.1
5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH
COORDINATES: similar to AA sequence:RefSeq:WP_011747442.1
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase CofG
COORDINATES: similar to AA sequence:RefSeq:WP_007009066.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397630.1
COORDINATES: similar to AA sequence:RefSeq:WP_017998809.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748665.1
GO:0008909 - isochorismate synthase activity [Evidence IEA]
GO:0009234 - menaquinone biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020808665.1
GO:0050380 - undecaprenyl-diphosphatase activity [Evidence IEA]
GO:0016311 - dephosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase.; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_013385720.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF014349.2
COORDINATES: similar to AA sequence:RefSeq:WP_011510447.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002730641.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013654839.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911055.1
COORDINATES: similar to AA sequence:RefSeq:WP_013068942.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126268.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009573855.1
COORDINATES: similar to AA sequence:RefSeq:WP_004120962.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011746847.1
COORDINATES: similar to AA sequence:RefSeq:WP_013168448.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_011747538.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747539.1
COORDINATES: similar to AA sequence:RefSeq:WP_009806539.1
COORDINATES: similar to AA sequence:RefSeq:WP_008828565.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009963308.1
COORDINATES: similar to AA sequence:RefSeq:WP_013383469.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011747010.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750347.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820057.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024408.2
COORDINATES: protein motif:HMM:NF033517.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558163.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001523.1
MotA/TolQ/ExbB proton channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018001521.1
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: similar to AA sequence:RefSeq:WP_018001518.1
type VI secretion system baseplate subunit TssK
COORDINATES: similar to AA sequence:RefSeq:WP_005863847.1
type VI secretion system protein TssL, long form
COORDINATES: protein motif:HMM:TIGR03348.1
type VI secretion system membrane subunit TssM
COORDINATES: protein motif:HMM:TIGR03373.1
type VI secretion system-associated protein TagF
COORDINATES: similar to AA sequence:RefSeq:WP_005863853.1
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: similar to AA sequence:RefSeq:WP_009209373.1
cyclopropane-fatty-acyl-phospholipid synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018860470.1
COORDINATES: protein motif:HMM:NF015737.2
autotransporter domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003858764.1
GO:0102039 - NADH-dependent peroxiredoxin activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007697521.1
GO:0016668 - oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor [Evidence IEA]
GO:0009398 - FMN biosynthetic process [Evidence IEA]; GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012116190.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009817690.1
COORDINATES: similar to AA sequence:RefSeq:WP_020851920.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0008941 - nitric oxide dioxygenase activity [Evidence IEA]; GO:0019825 - oxygen binding [Evidence IEA]
GO:0051409 - response to nitrosative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008121551.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751336.1
COORDINATES: similar to AA sequence:RefSeq:WP_010142124.1
COORDINATES: similar to AA sequence:RefSeq:WP_019955909.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010400760.1
COORDINATES: similar to AA sequence:RefSeq:WP_017929931.1
COORDINATES: protein motif:HMM:NF016145.2
polysaccharide pyruvyl transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002438756.1
COORDINATES: similar to AA sequence:RefSeq:WP_010392154.1
COORDINATES: similar to AA sequence:RefSeq:WP_017968701.1
COORDINATES: similar to AA sequence:RefSeq:WP_018117151.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_011746737.1
COORDINATES: similar to AA sequence:RefSeq:WP_005652389.1
COORDINATES: similar to AA sequence:RefSeq:WP_002722056.1
COORDINATES: similar to AA sequence:RefSeq:WP_010395224.1
COORDINATES: similar to AA sequence:RefSeq:WP_011982890.1
COORDINATES: protein motif:HMM:NF012801.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005854372.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001604.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione-dependent disulfide-bond oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_076612410.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_032490240.1
COORDINATES: similar to AA sequence:RefSeq:WP_009817385.1
COORDINATES: similar to AA sequence:RefSeq:WP_011456984.1
COORDINATES: similar to AA sequence:RefSeq:WP_018066685.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013845623.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019566676.1
iron-siderophore ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007812602.1
COORDINATES: similar to AA sequence:RefSeq:WP_006468289.1
COORDINATES: similar to AA sequence:RefSeq:WP_020009804.1
COORDINATES: similar to AA sequence:RefSeq:WP_013651294.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001353.1
COORDINATES: similar to AA sequence:RefSeq:WP_007771842.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010437347.1
COORDINATES: similar to AA sequence:RefSeq:WP_009159800.1
COORDINATES: similar to AA sequence:RefSeq:WP_009178116.1
COORDINATES: similar to AA sequence:RefSeq:WP_011339541.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015419 - ABC-type sulfate transporter activity [Evidence IEA]
GO:0008272 - sulfate transport [Evidence IEA]
sulfate ABC transporter permease subunit CysW
COORDINATES: similar to AA sequence:RefSeq:WP_011748093.1
sulfate ABC transporter permease subunit CysT
COORDINATES: similar to AA sequence:RefSeq:WP_011339540.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015419 - ABC-type sulfate transporter activity [Evidence IEA]; GO:0043199 - sulfate binding [Evidence IEA]
sulfate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010392298.1
sulfate/molybdate ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013068149.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009177329.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001592.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747015.1
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009176409.1
3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011747013.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747012.1
COORDINATES: similar to AA sequence:RefSeq:WP_019461355.1
COORDINATES: similar to AA sequence:RefSeq:WP_018632570.1
COORDINATES: similar to AA sequence:RefSeq:WP_014037478.1
COORDINATES: similar to AA sequence:RefSeq:WP_019184602.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748845.1
COORDINATES: similar to AA sequence:RefSeq:WP_014037163.1
COORDINATES: similar to AA sequence:RefSeq:WP_018632574.1
COORDINATES: similar to AA sequence:RefSeq:WP_010393578.1
COORDINATES: similar to AA sequence:RefSeq:WP_010393575.1
COORDINATES: similar to AA sequence:RefSeq:WP_008891823.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Cu(I)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011750502.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_013960163.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011751008.1
COORDINATES: similar to AA sequence:RefSeq:WP_004409210.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751250.1
energy-coupling factor transporter transmembrane component T
COORDINATES: similar to AA sequence:RefSeq:WP_018302952.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398784.1
COORDINATES: similar to AA sequence:RefSeq:WP_008188378.1
GSU2403 family nucleotidyltransferase fold protein
COORDINATES: similar to AA sequence:RefSeq:WP_009178255.1
type VI secretion system tip protein TssI/VgrG
COORDINATES: similar to AA sequence:RefSeq:WP_018918200.1
COORDINATES: protein motif:HMM:NF024894.2
COORDINATES: similar to AA sequence:RefSeq:WP_010140545.1
COORDINATES: similar to AA sequence:RefSeq:WP_009572599.1
COORDINATES: similar to AA sequence:RefSeq:WP_010392056.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572025.1
COORDINATES: similar to AA sequence:RefSeq:WP_014920619.1
COORDINATES: protein motif:HMM:NF016464.2
COORDINATES: similar to AA sequence:RefSeq:WP_008327497.1
COORDINATES: similar to AA sequence:RefSeq:WP_019173466.1
COORDINATES: similar to AA sequence:RefSeq:WP_002967274.1
COORDINATES: similar to AA sequence:RefSeq:WP_011566848.1
COORDINATES: similar to AA sequence:RefSeq:WP_020560048.1
COORDINATES: similar to AA sequence:RefSeq:WP_007751454.1
COORDINATES: protein motif:HMM:NF025072.2
COORDINATES: protein motif:HMM:NF025755.2
sugar-transfer associated ATP-grasp domain-containing protein
COORDINATES: protein motif:HMM:NF024968.2
COORDINATES: protein motif:HMM:NF012888.2
GO:0008146 - sulfotransferase activity [Evidence IEA]
sulfotransferase domain-containing protein
COORDINATES: protein motif:HMM:NF024831.2
exopolysaccharide transport family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011910505.1
glutathionylspermidine synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002724223.1
COORDINATES: similar to AA sequence:RefSeq:WP_007791754.1
COORDINATES: similar to AA sequence:RefSeq:WP_012706532.1
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012590751.1
GO:0045027 - DNA end binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003601302.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611945.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013791316.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018001602.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001601.1
COORDINATES: similar to AA sequence:RefSeq:WP_018916942.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:YP_002517214.1
GO:0004451 - isocitrate lyase activity [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018634233.1
COORDINATES: similar to AA sequence:RefSeq:WP_013069032.1
short-chain fatty acyl-CoA regulator family protein
COORDINATES: similar to AA sequence:RefSeq:WP_086558308.1
COORDINATES: protein motif:HMM:NF012656.2
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF014625.2
COORDINATES: protein motif:HMM:NF017238.2
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0009877 - nodulation [Evidence IEA]; GO:0009312 - oligosaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013383497.1
COORDINATES: similar to AA sequence:RefSeq:WP_013383496.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012640905.1
COORDINATES: similar to AA sequence:RefSeq:WP_008602160.1
COORDINATES: similar to AA sequence:RefSeq:WP_013383493.1
COORDINATES: similar to AA sequence:RefSeq:WP_013383492.1
COORDINATES: protein motif:HMM:NF017773.2
COORDINATES: similar to AA sequence:RefSeq:WP_010396487.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011749216.1
COORDINATES: similar to AA sequence:RefSeq:WP_003569039.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011749214.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397576.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008557807.1
GO:0008616 - queuosine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007120212.1
COORDINATES: similar to AA sequence:RefSeq:WP_013384101.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018066252.1
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: protein motif:HMM:NF016627.2
GO:0003839 - gamma-glutamylcyclotransferase activity [Evidence IEA]
GO:0006751 - glutathione catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011455325.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120222.1
COORDINATES: similar to AA sequence:RefSeq:WP_011509586.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611908.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612188.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611806.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611345.1
COORDINATES: protein motif:HMM:NF014653.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018000633.1
DnaA N-terminal domain-containing protein