Paracoccus alcaliphilus strain TK 1015 = DSM 8512 plasmid p429813, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Paracoccus.
Biogeographic distribution of Paracoccus
Submitted (05-JAN-2021) Genomic and Applied Microbiology & Goettingen Genomics Laboratory, Georg-August-University Goettingen, Grisebachstr. 8, Goettingen, Lower Saxony 37077, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP067125.1.\nBacteria and source DNA available from Prof. Dr. Thorsten\nBrinkhoff, ICMB, University Oldenburg.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 26-NOV-2020\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 148.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/09/2023 17:10:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,800\nCDSs (total) :: 4,744\nGenes (coding) :: 4,523\nCDSs (with protein) :: 4,523\nGenes (RNA) :: 56\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 3\nPseudo Genes (total) :: 221\nCDSs (without protein) :: 221\nPseudo Genes (ambiguous residues) :: 0 of 221\nPseudo Genes (frameshifted) :: 75 of 221\nPseudo Genes (incomplete) :: 180 of 221\nPseudo Genes (internal stop) :: 34 of 221\nPseudo Genes (multiple problems) :: 61 of 221\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013201773.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009635081.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011842551.1
COORDINATES: similar to AA sequence:RefSeq:WP_011568540.1
GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011453432.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011750586.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750587.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007802759.1
COORDINATES: similar to AA sequence:RefSeq:WP_012314546.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF014950.2
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012575.2
COORDINATES: similar to AA sequence:RefSeq:WP_008306712.1
PQQ-dependent dehydrogenase, methanol/ethanol family
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: similar to AA sequence:RefSeq:WP_017998830.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008560969.1
COORDINATES: similar to AA sequence:RefSeq:WP_018067618.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017998834.1
GO:0016861 - intramolecular oxidoreductase activity, interconverting aldoses and ketoses [Evidence IEA]
GO:0019310 - inositol catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017927437.1
COORDINATES: similar to AA sequence:RefSeq:WP_017998836.1
GO:0047590 - 5-dehydro-2-deoxygluconokinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012650678.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400106.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400104.1
COORDINATES: similar to AA sequence:RefSeq:WP_007701421.1
GO:0050114 - myo-inosose-2 dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007701426.1
GO:0016823 - hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)
COORDINATES: similar to AA sequence:RefSeq:WP_007701428.1
GO:0050112 - inositol 2-dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007701431.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_017998842.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012385749.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400094.1
COORDINATES: similar to AA sequence:RefSeq:WP_010401069.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010400113.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400114.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003524584.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010400121.1
COORDINATES: similar to AA sequence:RefSeq:WP_005662975.1
COORDINATES: similar to AA sequence:RefSeq:WP_009575875.1
COORDINATES: similar to AA sequence:RefSeq:WP_009760124.1
COORDINATES: similar to AA sequence:RefSeq:WP_011570288.1
COORDINATES: similar to AA sequence:RefSeq:WP_008034792.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_009157463.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001674.1
COORDINATES: similar to AA sequence:RefSeq:WP_009760129.1
COORDINATES: similar to AA sequence:RefSeq:WP_012427893.1
COORDINATES: similar to AA sequence:RefSeq:WP_007817822.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009570431.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001656.1
COORDINATES: similar to AA sequence:RefSeq:WP_009818603.1
COORDINATES: similar to AA sequence:RefSeq:WP_007146719.1
COORDINATES: similar to AA sequence:RefSeq:WP_017999376.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001437.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750680.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001439.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001440.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0008942 - nitrite reductase [NAD(P)H] activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0042128 - nitrate assimilation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009825833.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0008942 - nitrite reductase [NAD(P)H] activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018001443.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012723555.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001662.1
COORDINATES: similar to AA sequence:RefSeq:WP_009813659.1
COORDINATES: similar to AA sequence:RefSeq:WP_008887935.1
dimethylamine monooxygenase subunit DmmA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013844968.1
COORDINATES: similar to AA sequence:RefSeq:WP_009570432.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503501.1
glutamine amidotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018001651.1
COORDINATES: similar to AA sequence:RefSeq:WP_008887995.1
FMN-binding glutamate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009818605.1
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018001663.1
COORDINATES: similar to AA sequence:RefSeq:WP_003518227.1
GO:0008115 - sarcosine oxidase activity [Evidence IEA]
GO:0046653 - tetrahydrofolate metabolic process [Evidence IEA]
sarcosine oxidase subunit beta family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003518230.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751125.1
sarcosine oxidase subunit alpha family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011751124.1
COORDINATES: similar to AA sequence:RefSeq:WP_009816470.1
GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD
COORDINATES: similar to AA sequence:RefSeq:WP_018001668.1
GO:0008864 - formyltetrahydrofolate deformylase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003285679.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007762145.1
COORDINATES: similar to AA sequence:RefSeq:WP_009814846.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011750971.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394582.1
COORDINATES: similar to AA sequence:RefSeq:WP_009815420.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003551047.1
glycine betaine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007801360.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0015837 - amine transport [Evidence IEA]
Members of the family are the ATP-binding subunit of ABC transporters for substrates such as betaine, L-proline or other amino acids, choline, carnitine, etc. The substrate specificity is best determined from the substrate-binding subunit, rather than this subunit, as it interacts with the permease subunit and not with substrate directly; Derived by automated computational analysis using gene prediction method: Protein Homology.
betaine/proline/choline family ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011750967.1
COORDINATES: similar to AA sequence:RefSeq:WP_018327586.1
COORDINATES: similar to AA sequence:RefSeq:WP_008064465.1
COORDINATES: similar to AA sequence:RefSeq:WP_008136183.1
COORDINATES: similar to AA sequence:RefSeq:WP_019172421.1
COORDINATES: similar to AA sequence:RefSeq:WP_019172420.1
COORDINATES: similar to AA sequence:RefSeq:WP_019172419.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_019172418.1
COORDINATES: similar to AA sequence:RefSeq:WP_014747247.1
COORDINATES: similar to AA sequence:RefSeq:WP_008126060.1
COORDINATES: similar to AA sequence:RefSeq:WP_019172416.1
COORDINATES: similar to AA sequence:RefSeq:WP_012092330.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000890.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0015220 - choline transmembrane transporter activity [Evidence IEA]
GO:0015871 - choline transport [Evidence IEA]
choline ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018390008.1
COORDINATES: similar to AA sequence:RefSeq:WP_011982663.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_018496290.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394457.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611156.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018116797.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750669.1
COORDINATES: protein motif:HMM:NF016221.2
COORDINATES: similar to AA sequence:RefSeq:WP_011750671.1
COORDINATES: similar to AA sequence:RefSeq:WP_013166076.1
COORDINATES: similar to AA sequence:RefSeq:WP_012641028.1
COORDINATES: similar to AA sequence:RefSeq:WP_011842812.1
COORDINATES: similar to AA sequence:RefSeq:WP_018633484.1
COORDINATES: similar to AA sequence:RefSeq:WP_011339178.1
COORDINATES: similar to AA sequence:RefSeq:WP_002719726.1
COORDINATES: similar to AA sequence:RefSeq:WP_011840888.1
methanol/ethanol family PQQ-dependent dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_012112832.1
COORDINATES: similar to AA sequence:RefSeq:WP_011969582.1
COORDINATES: similar to AA sequence:RefSeq:WP_013651754.1
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_017998993.1
COORDINATES: similar to AA sequence:RefSeq:WP_018634203.1
COORDINATES: similar to AA sequence:RefSeq:WP_011908949.1
COORDINATES: similar to AA sequence:RefSeq:WP_011337585.1
COORDINATES: similar to AA sequence:RefSeq:WP_008281651.1
COORDINATES: similar to AA sequence:RefSeq:WP_011908952.1
PQQ-dependent catabolism-associated beta-propeller protein
COORDINATES: similar to AA sequence:RefSeq:WP_011908953.1
COORDINATES: similar to AA sequence:RefSeq:WP_017999003.1
COORDINATES: similar to AA sequence:RefSeq:WP_014527591.1
c-type cytochrome, methanol metabolism-related
COORDINATES: similar to AA sequence:RefSeq:WP_007799119.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006724663.1
COORDINATES: protein motif:HMM:NF014647.2
BMP family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020396367.1
COORDINATES: similar to AA sequence:RefSeq:WP_019173762.1
COORDINATES: similar to AA sequence:RefSeq:WP_020651160.1
COORDINATES: similar to AA sequence:RefSeq:WP_012079528.1
COORDINATES: similar to AA sequence:RefSeq:WP_019173765.1
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019173766.1
COORDINATES: similar to AA sequence:RefSeq:WP_008886011.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_002723340.1
COORDINATES: similar to AA sequence:RefSeq:WP_011910604.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001451.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008559899.1
COORDINATES: similar to AA sequence:RefSeq:WP_007800261.1
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019962928.1
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: protein motif:HMM:NF018979.2
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004724178.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_009572689.1
COORDINATES: similar to AA sequence:RefSeq:WP_007205278.1
sugar phosphate isomerase/epimerase and 4-hydroxyphenylpyruvate domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018633651.1
COORDINATES: similar to AA sequence:RefSeq:WP_007204692.1
COORDINATES: similar to AA sequence:RefSeq:WP_018633644.1
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_018633643.1
COORDINATES: similar to AA sequence:RefSeq:WP_018633642.1
COORDINATES: similar to AA sequence:RefSeq:WP_010627492.1
COORDINATES: similar to AA sequence:RefSeq:WP_014130376.1
COORDINATES: similar to AA sequence:RefSeq:WP_018633640.1
COORDINATES: similar to AA sequence:RefSeq:WP_018633639.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749393.1
GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]
GO:0006672 - ceramide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011747571.1
COORDINATES: similar to AA sequence:RefSeq:WP_009178281.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747573.1
COORDINATES: similar to AA sequence:RefSeq:WP_005622883.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747575.1
COORDINATES: similar to AA sequence:RefSeq:WP_008232696.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398951.1
COORDINATES: protein motif:HMM:NF012257.2
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:NF024589.2
adenylate/guanylate cyclase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010392219.1
COORDINATES: similar to AA sequence:RefSeq:WP_017140164.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012061441.1
catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011583269.1
COORDINATES: similar to AA sequence:RefSeq:WP_019295355.1
COORDINATES: similar to AA sequence:RefSeq:WP_018633718.1
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018634215.1
COORDINATES: similar to AA sequence:RefSeq:WP_011617249.1
GO:0009326 - formate dehydrogenase complex [Evidence IEA]
GO:0015942 - formate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012699070.1
GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0045333 - cellular respiration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003075254.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0009061 - anaerobic respiration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012356492.1
formate dehydrogenase accessory protein FdhE
COORDINATES: similar to AA sequence:RefSeq:WP_018150426.1
COORDINATES: similar to AA sequence:RefSeq:WP_012179338.1
COORDINATES: similar to AA sequence:RefSeq:WP_007256285.1
COORDINATES: similar to AA sequence:RefSeq:WP_007795977.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011746639.1
GO:0019104 - DNA N-glycosylase activity [Evidence IEA]
GO:0036297 - interstrand cross-link repair [Evidence IEA]
crosslink repair DNA glycosylase YcaQ family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011440167.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001425.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015225 - biotin transmembrane transporter activity [Evidence IEA]
GO:0015878 - biotin transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010396510.1
COORDINATES: similar to AA sequence:RefSeq:WP_008758846.1
COORDINATES: similar to AA sequence:RefSeq:WP_008758452.1
COORDINATES: protein motif:HMM:NF016145.2
polysaccharide pyruvyl transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018001073.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819383.1
Fe(3+)-hydroxamate ABC transporter permease FhuB
COORDINATES: similar to AA sequence:RefSeq:WP_003498278.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001070.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010972965.1
GO:0016020 - membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
COORDINATES: similar to AA sequence:RefSeq:WP_013893279.1
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: similar to AA sequence:RefSeq:WP_018856120.1
COORDINATES: similar to AA sequence:RefSeq:WP_013653918.1
COORDINATES: similar to AA sequence:RefSeq:WP_013382874.1
TRAP transporter substrate-binding protein DctP
COORDINATES: similar to AA sequence:RefSeq:WP_008837255.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970535.1
COORDINATES: similar to AA sequence:RefSeq:WP_007600727.1
COORDINATES: similar to AA sequence:RefSeq:WP_016882543.1
aromatic acid/H+ symport family MFS transporter
COORDINATES: similar to AA sequence:RefSeq:WP_007794746.1
GO:0047472 - 3-carboxy-cis,cis-muconate cycloisomerase activity [Evidence IEA]
3-carboxy-cis,cis-muconate cycloisomerase
COORDINATES: similar to AA sequence:RefSeq:WP_009573831.1
GO:0018578 - protocatechuate 3,4-dioxygenase activity [Evidence IEA]
GO:0046278 - 3,4-dihydroxybenzoate metabolic process [Evidence IEA]
protocatechuate 3,4-dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_009573830.1
protocatechuate 3,4-dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_009814199.1
GO:0047575 - 4-carboxymuconolactone decarboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007425598.1
GO:0047570 - 3-oxoadipate enol-lactonase activity [Evidence IEA]
GO:0042952 - beta-ketoadipate pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018063822.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750773.1
COORDINATES: similar to AA sequence:RefSeq:WP_010969774.1
COORDINATES: similar to AA sequence:RefSeq:WP_002719482.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750770.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008029399.1
COORDINATES: similar to AA sequence:RefSeq:WP_011908629.1
COORDINATES: similar to AA sequence:RefSeq:WP_009564774.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007282.1
COORDINATES: similar to AA sequence:RefSeq:WP_009756285.1
COORDINATES: similar to AA sequence:RefSeq:WP_014248879.1
COORDINATES: similar to AA sequence:RefSeq:WP_009756283.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000918.1
COORDINATES: similar to AA sequence:RefSeq:WP_009817425.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747020.1
COORDINATES: similar to AA sequence:RefSeq:WP_003525695.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010394850.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017929525.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
putative selenate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010397730.1
COORDINATES: similar to AA sequence:RefSeq:WP_004582305.1
COORDINATES: protein motif:HMM:NF012926.2
COORDINATES: similar to AA sequence:RefSeq:WP_012589450.1
COORDINATES: protein motif:HMM:NF013126.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
glycoside hydrolase family 3 N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_011842587.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748956.1
COORDINATES: similar to AA sequence:RefSeq:WP_015923118.1
COORDINATES: similar to AA sequence:RefSeq:WP_007089006.1
COORDINATES: similar to AA sequence:RefSeq:WP_007089007.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751283.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396385.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328159.1
COORDINATES: similar to AA sequence:RefSeq:WP_011426284.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751050.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956225.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751048.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189152.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_004681836.1
COORDINATES: similar to AA sequence:RefSeq:WP_006470719.1
COORDINATES: similar to AA sequence:RefSeq:WP_012676998.1
COORDINATES: similar to AA sequence:RefSeq:WP_014132820.1
COORDINATES: similar to AA sequence:RefSeq:WP_019170272.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011747063.1
COORDINATES: similar to AA sequence:RefSeq:WP_017999508.1
COORDINATES: similar to AA sequence:RefSeq:WP_006473203.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011747060.1
GO:0016153 - urocanate hydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006469509.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011747058.1
COORDINATES: similar to AA sequence:RefSeq:WP_006467498.1
GO:0050129 - N-formylglutamate deformylase activity [Evidence IEA]
GO:0019557 - histidine catabolic process to glutamate and formate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010393761.1
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011747055.1
GO:0050480 - imidazolonepropionase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019170281.1
COORDINATES: similar to AA sequence:RefSeq:WP_010393755.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001344.1
COORDINATES: similar to AA sequence:RefSeq:WP_011842661.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747008.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747009.1
TAXI family TRAP transporter solute-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011578907.1
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_002926306.1
COORDINATES: similar to AA sequence:RefSeq:WP_000502612.1
COORDINATES: similar to AA sequence:RefSeq:WP_008891999.1
COORDINATES: similar to AA sequence:RefSeq:WP_018237608.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736809.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751084.1
COORDINATES: similar to AA sequence:RefSeq:WP_018632521.1
COORDINATES: similar to AA sequence:RefSeq:WP_014976903.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611908.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009505384.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000778.1
COORDINATES: similar to AA sequence:RefSeq:WP_009809078.1
GO:0009325 - nitrate reductase complex [Evidence IEA]
GO:0008940 - nitrate reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009505381.1
COORDINATES: similar to AA sequence:RefSeq:WP_009505380.1
GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051131 - chaperone-mediated protein complex assembly [Evidence IEA]
nitrate reductase molybdenum cofactor assembly chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_009505379.1
GO:0019645 - anaerobic electron transport chain [Evidence IEA]
respiratory nitrate reductase subunit gamma
COORDINATES: similar to AA sequence:RefSeq:WP_009809074.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750792.1
COORDINATES: similar to AA sequence:RefSeq:WP_009340074.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748014.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748015.1
COORDINATES: similar to AA sequence:RefSeq:WP_010395493.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748017.1
COORDINATES: similar to AA sequence:RefSeq:WP_018325585.1
COORDINATES: similar to AA sequence:RefSeq:WP_007877722.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0008987 - quinolinate synthetase A activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007812105.1
GO:0008734 - L-aspartate oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020010005.1
GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity [Evidence IEA]
GO:0019363 - pyridine nucleotide biosynthetic process [Evidence IEA]
carboxylating nicotinate-nucleotide diphosphorylase
COORDINATES: similar to AA sequence:RefSeq:WP_009722227.1
GO:0015276 - ligand-gated monoatomic ion channel activity [Evidence IEA]
glutamine ABC transporter substrate-binding protein GlnH
COORDINATES: similar to AA sequence:RefSeq:WP_018097981.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010322087.1
GO:0015424 - ABC-type amino acid transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0003333 - amino acid transmembrane transport [Evidence IEA]
glutamine ABC transporter ATP-binding protein GlnQ
COORDINATES: similar to AA sequence:RefSeq:WP_009722230.1
COORDINATES: protein motif:HMM:NF026098.2
pyrroline-5-carboxylate reductase dimerization domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010396968.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751300.1
COORDINATES: similar to AA sequence:RefSeq:WP_003525354.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396961.1
COORDINATES: similar to AA sequence:RefSeq:WP_003525357.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751296.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002719889.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017926979.1
COORDINATES: similar to AA sequence:RefSeq:WP_008886023.1
COORDINATES: similar to AA sequence:RefSeq:WP_003498884.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807074.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751104.1
COORDINATES: similar to AA sequence:RefSeq:WP_009833975.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751106.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751107.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751108.1
nitrilase-related carbon-nitrogen hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_011751112.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751113.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751114.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751115.1
hybrid-cluster NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_011751116.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_018000283.1
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]
aminodeoxychorismate synthase component I
COORDINATES: similar to AA sequence:RefSeq:WP_009561702.1
aminotransferase class IV family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018000323.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_011749710.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749712.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
GO:0044237 - cellular metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011749708.1
COORDINATES: similar to AA sequence:RefSeq:WP_006335304.1
COORDINATES: similar to AA sequence:RefSeq:WP_009831017.1
COORDINATES: similar to AA sequence:RefSeq:WP_011049359.1
COORDINATES: similar to AA sequence:RefSeq:WP_013897030.1
COORDINATES: similar to AA sequence:RefSeq:WP_013847790.1
GO:0008777 - acetylornithine deacetylase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008889620.1
COORDINATES: similar to AA sequence:RefSeq:WP_002652260.1
LLM class flavin-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF019960.2
COORDINATES: similar to AA sequence:RefSeq:WP_006576658.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911055.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750477.1
COORDINATES: similar to AA sequence:RefSeq:WP_005611152.1
COORDINATES: similar to AA sequence:RefSeq:WP_005857581.1
COORDINATES: similar to AA sequence:RefSeq:WP_005857579.1
COORDINATES: similar to AA sequence:RefSeq:WP_014129413.1
COORDINATES: similar to AA sequence:RefSeq:WP_005857577.1
COORDINATES: similar to AA sequence:RefSeq:WP_005611162.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001541.1
COORDINATES: similar to AA sequence:RefSeq:WP_019963727.1
galactofuranose ABC transporter, galactofuranose-binding protein YtfQ
COORDINATES: similar to AA sequence:RefSeq:WP_019950668.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001538.1
COORDINATES: similar to AA sequence:RefSeq:WP_018237240.1
galactofuranose ABC transporter, permease protein YjfF
COORDINATES: similar to AA sequence:RefSeq:WP_009178335.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010141858.1
COORDINATES: similar to AA sequence:RefSeq:WP_015500603.1
COORDINATES: similar to AA sequence:RefSeq:WP_007558859.1
2-dehydro-3-deoxy-6-phosphogalactonate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_012558821.1
COORDINATES: similar to AA sequence:RefSeq:WP_012562031.1
GO:0016746 - acyltransferase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_009452841.1
COORDINATES: similar to AA sequence:RefSeq:WP_008839790.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397784.1
COORDINATES: similar to AA sequence:RefSeq:WP_010392511.1
COORDINATES: similar to AA sequence:RefSeq:WP_009683974.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019938869.1
GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0033286 - ATPase-coupled ectoine transmembrane transporter activity [Evidence IEA]; GO:0033288 - ATPase-coupled hydroxyectoine transmembrane transporter activity [Evidence IEA]
GO:0051470 - ectoine transport [Evidence IEA]; GO:0033308 - hydroxyectoine transport [Evidence IEA]
ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA
COORDINATES: similar to AA sequence:RefSeq:WP_007879992.1
GO:0033286 - ATPase-coupled ectoine transmembrane transporter activity [Evidence IEA]; GO:0033288 - ATPase-coupled hydroxyectoine transmembrane transporter activity [Evidence IEA]
ectoine/hydroxyectoine ABC transporter permease subunit EhuD
COORDINATES: similar to AA sequence:RefSeq:WP_013887025.1
ectoine/hydroxyectoine ABC transporter permease subunit EhuC
COORDINATES: similar to AA sequence:RefSeq:WP_015343621.1
GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0033286 - ATPase-coupled ectoine transmembrane transporter activity [Evidence IEA]; GO:0033288 - ATPase-coupled hydroxyectoine transmembrane transporter activity [Evidence IEA]; GO:0033294 - ectoine binding [Evidence IEA]; GO:0033295 - hydroxyectoine binding [Evidence IEA]
ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB
COORDINATES: similar to AA sequence:RefSeq:WP_013962994.1
COORDINATES: similar to AA sequence:RefSeq:WP_011567810.1
COORDINATES: similar to AA sequence:RefSeq:WP_013651337.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_018000762.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000761.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748760.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748759.1
cytochrome C oxidase subunit IV family protein
COORDINATES: protein motif:HMM:NF015140.2
GO:0007154 - cell communication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006468366.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006643179.1
COORDINATES: similar to AA sequence:RefSeq:WP_011509972.1
COORDINATES: similar to AA sequence:RefSeq:WP_004687474.1
COORDINATES: similar to AA sequence:RefSeq:WP_009561276.1
zinc ribbon domain-containing protein YjdM
COORDINATES: similar to AA sequence:RefSeq:WP_013384209.1
TonB-dependent hemoglobin/transferrin/lactoferrin family receptor
COORDINATES: similar to AA sequence:RefSeq:WP_009755615.1
COORDINATES: similar to AA sequence:RefSeq:WP_012091322.1