Komagataeibacter europaeus strain SRCM101446 plasmid pKE1446-2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.
Genome sequence of Komagataeibacter europaeus strain SRCM101446
Submitted (25-MAY-2017) Bioinformatics Research Institute, Microbial Institiue for Fermentation Industry, 61-27 Minsokmaeul-gil, Sunchan-eup, Sunchang-gun 56048, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP021469.1.\nBacteria and source DNA available from Microbial Institute for\nFermentation Industry.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Analysis v. 2.3.0\nExpected Final Version :: yes\nGenome Coverage :: 252.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 03:01:45\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,487\nCDSs (total) :: 3,410\nGenes (coding) :: 3,309\nCDSs (with protein) :: 3,309\nGenes (RNA) :: 77\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 101\nCDSs (without protein) :: 101\nPseudo Genes (ambiguous residues) :: 0 of 101\nPseudo Genes (frameshifted) :: 59 of 101\nPseudo Genes (incomplete) :: 73 of 101\nPseudo Genes (internal stop) :: 20 of 101\nPseudo Genes (multiple problems) :: 40 of 101\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_019088721.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_010668421.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_014106724.1
COORDINATES: similar to AA sequence:RefSeq:WP_010512507.1
COORDINATES: similar to AA sequence:RefSeq:WP_007396584.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007396602.1
COORDINATES: similar to AA sequence:RefSeq:WP_006560454.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006560453.1
COORDINATES: protein motif:HMM:NF018482.2
invasion associated locus B family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007396606.1
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: protein motif:HMM:NF024728.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
carboxypeptidase regulatory-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010510587.1
formaldehyde-responsive transcriptional repressor FrmR
COORDINATES: similar to AA sequence:RefSeq:YP_004995413.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_003626679.1
COORDINATES: similar to AA sequence:RefSeq:WP_010510580.1
GO:0018738 - S-formylglutathione hydrolase activity [Evidence IEA]
GO:0046292 - formaldehyde metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003626996.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010511170.1
COORDINATES: similar to AA sequence:RefSeq:WP_010511173.1
COORDINATES: similar to AA sequence:RefSeq:WP_010512407.1
Fic/DOC family N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019087017.1
GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]
GO:0006821 - chloride transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010516400.1
ClC family H(+)/Cl(-) exchange transporter
COORDINATES: similar to AA sequence:RefSeq:WP_010512413.1
COORDINATES: similar to AA sequence:RefSeq:WP_010512412.1
COORDINATES: similar to AA sequence:RefSeq:WP_004167347.1
COORDINATES: similar to AA sequence:RefSeq:WP_007284615.1
COORDINATES: protein motif:HMM:NF014643.2
GO:0110001 - toxin-antitoxin complex [Evidence IEA]
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_015472931.1
COORDINATES: similar to AA sequence:RefSeq:WP_019092368.1
COORDINATES: protein motif:HMM:NF018152.2
COORDINATES: similar to AA sequence:RefSeq:WP_012553980.1
COORDINATES: similar to AA sequence:RefSeq:WP_010512301.1
GO:0016746 - acyltransferase activity [Evidence IEA]
GO:0046677 - response to antibiotic [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007396251.1
COORDINATES: similar to AA sequence:RefSeq:WP_010665981.1