Rickettsia bellii isolate An04 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; belli group.
Complete whole-genome sequences and annotation of two rickettsial isolates, Rickettsia bellii strain An04 and Rickettsia hoogstraalii strain RCee3
Submitted (30-MAR-2016) Molecular, Cellular, & Biomedical Sciences, University of New Hampshire, 46 College Rd, Durham, NH 03824, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP015011.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. JUNE-2013\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 86.7x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/21/2022 01:16:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,602\nCDSs (total) :: 1,562\nGenes (coding) :: 1,502\nCDSs (with protein) :: 1,502\nGenes (RNA) :: 40\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 34\nncRNAs :: 3\nPseudo Genes (total) :: 60\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 60\nPseudo Genes (frameshifted) :: 28 of 60\nPseudo Genes (incomplete) :: 28 of 60\nPseudo Genes (internal stop) :: 16 of 60\nPseudo Genes (multiple problems) :: 10 of 60\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013862.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
patatin-like phospholipase family protein
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: similar to AA sequence:RefSeq:WP_008581547.1
COORDINATES: protein motif:HMM:TIGR04416.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: protein motif:HMM:NF024299.2
COORDINATES: similar to AA sequence:RefSeq:WP_008581545.1
COORDINATES: protein motif:HMM:NF015737.2
autotransporter domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008581347.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011382086.1
COORDINATES: similar to AA sequence:RefSeq:WP_008581343.1
COORDINATES: similar to AA sequence:RefSeq:WP_008581342.1
DnaA N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF020436.2
COORDINATES: similar to AA sequence:RefSeq:WP_012736482.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008581416.1
COORDINATES: similar to AA sequence:RefSeq:WP_010424138.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: protein motif:HMM:NF024954.2
COORDINATES: similar to AA sequence:RefSeq:WP_008581395.1
COORDINATES: similar to AA sequence:RefSeq:WP_008581397.1
COORDINATES: similar to AA sequence:RefSeq:WP_013006733.1
COORDINATES: similar to AA sequence:RefSeq:WP_008580490.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008581363.1
COORDINATES: protein motif:HMM:NF023988.2