Melissococcus plutonius strain DAT561 plasmid pMP19.
Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Melissococcus.
Whole genome sequence of Melissococcus plutonius DAT561
Submitted (29-JAN-2018) Contact:Kayo Okumura Obihiro University of Agriculture and Veterinary Medicine, Department of Veterinary Medicine; Inada-cho, Obihiro, Hokkaido 080-8555, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP018494.1.\nName:Okura M., Takamatsu D.\ninstitute:National Institute of Animal Health, National Agriculture\nand Food Research Organization\ndepartment:Division of Bacterial and Parasitic Disease.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3; Sequencher v. 5.2\nGenome Coverage :: 309x\nSequencing Technology :: ABI3730xI; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/27/2022 01:57:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,777\nCDSs (total) :: 1,700\nGenes (coding) :: 1,679\nCDSs (with protein) :: 1,679\nGenes (RNA) :: 77\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 4\nPseudo Genes (total) :: 21\nCDSs (without protein) :: 21\nPseudo Genes (ambiguous residues) :: 0 of 21\nPseudo Genes (frameshifted) :: 11 of 21\nPseudo Genes (incomplete) :: 9 of 21\nPseudo Genes (internal stop) :: 7 of 21\nPseudo Genes (multiple problems) :: 4 of 21\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##
COORDINATES: protein motif:HMM:NF014537.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
replication initiation factor domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF019202.2
COORDINATES: similar to AA sequence:RefSeq:WP_013774697.1
type I toxin-antitoxin system toxin PepG1
COORDINATES: similar to AA sequence:RefSeq:WP_002187705.1
COORDINATES: protein motif:HMM:NF012743.2
COORDINATES: protein motif:HMM:NF015288.2
COORDINATES: similar to AA sequence:RefSeq:WP_002415155.1
COORDINATES: protein motif:HMM:NF036624.2
COORDINATES: similar to AA sequence:RefSeq:WP_003706882.1
COORDINATES: similar to AA sequence:RefSeq:WP_002370297.1
COORDINATES: similar to AA sequence:RefSeq:WP_002393264.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]