Melissococcus plutonius strain DAT561 plasmid pMP19.
type: Entry
definition: Melissococcus plutonius strain DAT561 plasmid pMP19.
sequence version: NZ_AP018494.1
sequence date: 2022-12-27
sequence: sequence
division: CON
label: NZ_AP018494.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00106497
keyword: RefSeq
source: Melissococcus plutonius
organism: Melissococcus plutonius
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Melissococcus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP018494.1.\nName:Okura M., Takamatsu D.\ninstitute:National Institute of Animal Health, National Agriculture\nand Food Research Organization\ndepartment:Division of Bacterial and Parasitic Disease.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3; Sequencher v. 5.2\nGenome Coverage :: 309x\nSequencing Technology :: ABI3730xI; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/27/2022 01:57:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,777\nCDSs (total) :: 1,700\nGenes (coding) :: 1,679\nCDSs (with protein) :: 1,679\nGenes (RNA) :: 77\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 4\nPseudo Genes (total) :: 21\nCDSs (without protein) :: 21\nPseudo Genes (ambiguous residues) :: 0 of 21\nPseudo Genes (frameshifted) :: 11 of 21\nPseudo Genes (incomplete) :: 9 of 21\nPseudo Genes (internal stop) :: 7 of 21\nPseudo Genes (multiple problems) :: 4 of 21\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 19967
topology: circular
so has quality: SO_0000988
location: 1..19967
location: region:1-19967:1
RO_0002162: 33970

NZ_AP018494
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00106497
type: BioSample
SIO_000068: biosample

1
title: Whole genome sequence of Melissococcus plutonius DAT561
author: Okumura, K.
author: Takamatsu, D.
author: Okura, M.
journal: Unpublished

2
title: Direct Submission
author: Okumura, K.
author: Takamatsu, D.
author: Okura, M.
journal: Submitted (29-JAN-2018) Contact:Kayo Okumura Obihiro University of Agriculture and Veterinary Medicine, Department of Veterinary Medicine; Inada-cho, Obihiro, Hokkaido 080-8555, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19967:1
position: 19967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19967:1:source
so part of: sequence
organism: Melissococcus plutonius
mol type: genomic DNA
strain: DAT561
host: Apis mellifera
plasmid: pMP19
country: Japan

33970
type: Taxonomy
SIO_000068: taxonomy

DAT869_RS08745
type: Gene
subclass of: SO_0000704
RO_0002162: 33970
locus tag: DAT869_RS08745
old locus tag: DAT561_p0001
so part of: sequence
location: 119..1150
location: region:119-1150:1
so has part: feature:119-1150:1:exon
subclass of: SO_0000010

39499514
type: Gene
SIO_000068: ncbigene

position:119:1
position: 119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1150:1
position: 1150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:119-1150:1:exon

DAT869_RS08745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33970
locus tag: DAT869_RS08745
old locus tag: DAT561_p0001
inference: COORDINATES: protein motif:HMM:NF014537.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation factor domain-containing protein
translation: MDQSEGLEAKFDYVRVRLPTHNVERVINQILLMDIDQFHCKPTGLYGYLEMYEYDSIRVLQSEKGNERGILIELAGHGCRNYEYILNELDQRWLDFFIRCLLVDGVIKRIDVAIDDYIEYFSLADVVKKRKKMEIVTSFRKSRIVDSTSMDEGLNEGLTAYFGTRNSLVYFCFYQKNYEIAHREKIPVEAVDVKNRYETRFQQEKAQKFIEHYVEDTYLLRSARSVISQQLMFTETKRDGTICEWAKWRKFLGATEYVDLSMEPIKPSFERKLRWLKNYCSQAMEVVRIVGDQEGKDYFAELLSDIELNERNKKVIEWQLAQNMELLSCEGQLIAQDTGEILC
SIO_010081: DAT869_RS08745
subclass of: SO_0000673
so part of: DAT869_RS08745
location: 119..1150
location: region:119-1150:1
so has part: feature:119-1150:1:exon

WP_232048067.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:119-1150:1:exon

DAT869_RS08750
type: Gene
subclass of: SO_0000704
RO_0002162: 33970
locus tag: DAT869_RS08750
old locus tag: DAT561_p0002
so part of: sequence
location: 1144..1674
location: region:1144-1674:1
so has part: feature:1144-1674:1:exon
subclass of: SO_0000010

39499530
type: Gene
SIO_000068: ncbigene

position:1144:1
position: 1144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1674:1
position: 1674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1144-1674:1:exon

DAT869_RS08750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33970
locus tag: DAT869_RS08750
old locus tag: DAT561_p0002
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLKNQRNMEKMEKRLTLNQQVKILLEEKRRKKCESERSKEKLGEQHKLEKLKTKLKLYINLSKKEGKIKRFIYASFAFSIINIEAIIISVFVFFVAMLLPFLFRLPILMPIISAVFFDIIFLLCFAFVVIGLMTTDKIILEKIKETKEELEIEIVLEEGKATEEKIKIDQAMIDNE
SIO_010081: DAT869_RS08750
subclass of: SO_0000673
so part of: DAT869_RS08750
location: 1144..1674
location: region:1144-1674:1
so has part: feature:1144-1674:1:exon

WP_048593210.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1144-1674:1:exon

DAT869_RS08755
type: Gene
subclass of: SO_0000704
RO_0002162: 33970
locus tag: DAT869_RS08755
old locus tag: DAT561_p0003
so part of: sequence
location: 1830..3089
location: region:1830-3089:1
so has part: feature:1830-3089:1:exon
subclass of: SO_0000010

39499513
type: Gene
SIO_000068: ncbigene

position:1830:1
position: 1830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3089:1
position: 3089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1830-3089:1:exon

DAT869_RS08755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33970
locus tag: DAT869_RS08755
old locus tag: DAT561_p0003
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNVSDRLKRLTSKQKIVVGATAIIIVCGVAISIGETKMHKKEAIAHTVVNKDQDKLEQLTVKAKNLLSQEDKEFLAENITHTQVDELQKELGKFPRQSKAKTTVSDLLKKINDKLSAQETVNKLYKQDKRVALNGTAVNKDLPITDDLNESTVQLIKEQYKKEKPTTFDKVLMTLIDGAMDQVKQMDHAKQLVGKVFKENKVISTDHKAYDEAKKETEKIKNEKEKKALLDQLAKVKTEMDKPKIKTESKEKNQNISQNKQPGKVARDTQGITKATPNHQATHTGNQAQTPQNQPTTNGGGTQGQNGAGNQGQPTTPTAGNGGGNVAPSQPQQPSRPNGGSVTPSQPQRPSRPNNGGNTGGGSTTPSKPTPPAKPDKPSGPPAGWMVPPYPIGSNALWNWLDDHGYRGYDSSDGYIKSY
SIO_010081: DAT869_RS08755
subclass of: SO_0000673
so part of: DAT869_RS08755
location: 1830..3089
location: region:1830-3089:1
so has part: feature:1830-3089:1:exon

WP_048593211.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1830-3089:1:exon

DAT869_RS08935
type: Gene
subclass of: SO_0000704
RO_0002162: 33970
locus tag: DAT869_RS08935
old locus tag: DAT561_p0005
so part of: sequence
location: 3289..3576
location: region:3289-3576:1
so has part: feature:3289-3576:1:exon
subclass of: SO_0000010

57044166
type: Gene
SIO_000068: ncbigene

position:3289:1
position: 3289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3576:1
position: 3576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3289-3576:1:exon

DAT869_RS08935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33970
locus tag: DAT869_RS08935
old locus tag: DAT561_p0005
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAGVVFPKQVTIEFNDKNLYRFKGKYEDGTIHDKLDAPIFAVYEGKRQPVFCYEPNVLTVNPVTPGFSKNPLPDSIGKNNRAKYISVLWKYVGKY
SIO_010081: DAT869_RS08935
subclass of: SO_0000673
so part of: DAT869_RS08935
location: 3289..3576
location: region:3289-3576:1
so has part: feature:3289-3576:1:exon

WP_152666655.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3289-3576:1:exon

DAT869_RS08760
type: Gene
subclass of: SO_0000704
RO_0002162: 33970
locus tag: DAT869_RS08760
old locus tag: DAT561_p0007
so part of: sequence
location: 4281..>6277
location: region:4281-6277:1
so has part: feature:4281-6277:1:exon
subclass of: SO_0000010

39499532
type: Gene
SIO_000068: ncbigene

position:4281:1
position: 4281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6277:1
position: 6277
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4281-6277:1:exon

DAT869_RS08760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33970
locus tag: DAT869_RS08760
old locus tag: DAT561_p0007
inference: COORDINATES: protein motif:HMM:NF019202.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1542 domain-containing protein
translation: MKNKLIRDLEVKKKFKMYKAKKHWVIAPIIFLGIASMSMVGNTYAEANSSKTEVSISNSENHKGSLQVPDDKKMNTINSETYVQKNEEASQKLLMFKQEKKKQLKQIIGLTDEQIRIFTSSIDEATTEATIKAIIDDAEKQATENNKEKIKLSEKTKNENDQARKQEDAKQKIESQVTASQSTKVGNNLNENIRINNFSNANPEYSHDEFDPSKEGGRVLPTIGLNPPVIKSLGYKADKLYIKLSHSSGEKFNEVNKVYSVDITFGSEVLPQFKNYGQYYDIGYDETRDEYYIQVTGRLAEILNNPQNINENSKFTFVVIYRAIDRINIIKSQPVTVKLTNKDVLEYNLSEVADRINNEIENDNSLTTEEKAEQKEKVKQEFEKGKNNILNSTNDAEANNKYNEAVINIERAHTTGTAKKIAKAEIDAEAKKVKDEIDTDGTLTAEEKEKQKAGVDQEAEKARGAIDGAKDIDGVNQGKADGIKAIDDQHKPGDPVDNRKEQAKADIDAEAKKVKDEIDTDGTLTAEEKEKQKAGVDQEAEKAKGAIDGAKDIDGVNQGKADGIKAIDDQHKPGDPVDNRKEQAKADIDKEAKKVKDEIDTDGTLTAKEKEKQKAGVDQEAEKAKGAIDGAKDIDGVNQGKADGIKAIDDQHKPGDPVDNRKEQA
SIO_010081: DAT869_RS08760
subclass of: SO_0000673
so part of: DAT869_RS08760
location: 4281..>6277
location: region:4281-6277:1
so has part: feature:4281-6277:1:exon

WP_126347323.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4281-6277:1:exon

DAT869_RS08765
type: Gene
subclass of: SO_0000704
RO_0002162: 33970
locus tag: DAT869_RS08765
old locus tag: DAT561_p0008
so part of: sequence
location: <7078..8080
location: region:7078-8080:1
so has part: feature:7078-8080:1:exon
subclass of: SO_0000010

39499531
type: Gene
SIO_000068: ncbigene

position:7078:1
position: 7078
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:8080:1
position: 8080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7078-8080:1:exon

DAT869_RS08765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33970
locus tag: DAT869_RS08765
old locus tag: DAT561_p0008
inference: COORDINATES: protein motif:HMM:NF019202.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 2
transl table: 11
product: DUF1542 domain-containing protein
translation: KVKDEIDTDGTLTAKEKEKQKAGVDQEAEKAKGAIDGAKDIDGVNQGKADGIKAIDDQHKPGDPVDNRKEQAKEDIDKEAKKVKDEIDTDGKLTAEEKEKQKAGVDQEAEKAKGAIDGAKDIDGVNQGKADGIKAIDDQHKPGDPVDNRKEQAKEDIDKEAKKVKDEIDTDGKLTAEEKEKQKADVDQEAEKAKGAIDGAKDIDGVNQGKADGIKAIDDQHKPGDPVDNRKEQAKADIDKEAKKVKDEIDTDEIRAIDDQHKPGNSVDNRKEKVKIYKNNNFKKNDNQKIFNNMKIKNSKQFPNTGEENNVKFFVLGIFFVFVSFLGVLKLYK
SIO_010081: DAT869_RS08765
subclass of: SO_0000673
so part of: DAT869_RS08765
location: <7078..8080
location: region:7078-8080:1
so has part: feature:7078-8080:1:exon

WP_172956625.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7078-8080:1:exon

DAT869_RS08770
type: Gene
subclass of: SO_0000704
RO_0002162: 33970
locus tag: DAT869_RS08770
old locus tag: DAT561_p0009
so part of: sequence
location: 8450..8722
location: region:8450-8722:1
so has part: feature:8450-8722:1:exon
subclass of: SO_0000010

39499523
type: Gene
SIO_000068: ncbigene

position:8450:1
position: 8450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8722:1
position: 8722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8450-8722:1:exon

DAT869_RS08770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33970
locus tag: DAT869_RS08770
old locus tag: DAT561_p0009
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTRKEEGIAITMKGFPYLVFDGKNFEKVVAFCSPHKVRKTKKFNTTKKVAIDFPTGNRSIQPNEILVKVTEGEYLILSRTVFDFLFFDA
SIO_010081: DAT869_RS08770
subclass of: SO_0000673
so part of: DAT869_RS08770
location: 8450..8722
location: region:8450-8722:1
so has part: feature:8450-8722:1:exon

WP_126347325.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8450-8722:1:exon

DAT869_RS08775
type: Gene
subclass of: SO_0000704
RO_0002162: 33970
locus tag: DAT869_RS08775
old locus tag: DAT561_p0010
so part of: sequence
location: 8840..8983
location: region:8840-8983:1
so has part: feature:8840-8983:1:exon
subclass of: SO_0000010

39499516
type: Gene
SIO_000068: ncbigene

position:8840:1
position: 8840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8983:1
position: 8983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8840-8983:1:exon

DAT869_RS08775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33970
locus tag: DAT869_RS08775
old locus tag: DAT561_p0010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013774697.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I toxin-antitoxin system toxin PepG1
translation: MNVSAKIGERRSLLSAFETIQTILGFGMFTIALIGLVVKLLKNDNKK
SIO_010081: DAT869_RS08775
subclass of: SO_0000673
so part of: DAT869_RS08775
location: 8840..8983
location: region:8840-8983:1
so has part: feature:8840-8983:1:exon

WP_080965025.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8840-8983:1:exon

DAT869_RS08780
type: Gene
subclass of: SO_0000704
RO_0002162: 33970
locus tag: DAT869_RS08780
old locus tag: DAT561_p0011
so part of: sequence
location: 9287..9850
location: region:9287-9850:1
so has part: feature:9287-9850:1:exon
subclass of: SO_0000010

39499515
type: Gene
SIO_000068: ncbigene

position:9287:1
position: 9287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9850:1
position: 9850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9287-9850:1:exon

DAT869_RS08780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33970
locus tag: DAT869_RS08780
old locus tag: DAT561_p0011
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002187705.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MIFGYARVSTWGQDLESQIIALQKANCEKIYTEKFTGTKLERKEFQKLLKELAEGDTLVVTKLDRFARSTVQGLETVQNLFERGIKIHVLNMGIIENTPTGRLTFTIFSAFAEFERDMIVERTQEGKMLAKLNPKFKEGRPKKFNKAQLDLAMELLEHDTTKNVSRKTGISEATLYREKRQRKYHVS
SIO_010081: DAT869_RS08780
subclass of: SO_0000673
so part of: DAT869_RS08780
location: 9287..9850
location: region:9287-9850:1
so has part: feature:9287-9850:1:exon

WP_048593201.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9287-9850:1:exon

DAT869_RS08785
type: Gene
subclass of: SO_0000704
RO_0002162: 33970
locus tag: DAT869_RS08785
old locus tag: DAT561_p0012
so part of: sequence
location: 9903..10322
location: region:9903-10322:1
so has part: feature:9903-10322:1:exon
subclass of: SO_0000010

39499517
type: Gene
SIO_000068: ncbigene

position:9903:1
position: 9903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10322:1
position: 10322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9903-10322:1:exon

DAT869_RS08785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33970
locus tag: DAT869_RS08785
old locus tag: DAT561_p0012
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLDPEKIEILVPNSLVFESHNQLSVCKQYVSVSASLVKKMGSPEYARFYIDRSSKQLFVVPCKSGIEGACKFYNKKSRSNTVRISSTILTREIAEVAGINLGKKDKYRFNPEEVVGRKNALGFDLTKSEQLERHIQTD
SIO_010081: DAT869_RS08785
subclass of: SO_0000673
so part of: DAT869_RS08785
location: 9903..10322
location: region:9903-10322:1
so has part: feature:9903-10322:1:exon

WP_048593202.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9903-10322:1:exon

DAT869_RS08790
type: Gene
subclass of: SO_0000704
RO_0002162: 33970
locus tag: DAT869_RS08790
old locus tag: DAT561_p0013
so part of: sequence
location: 10469..10612
location: region:10469-10612:1
so has part: feature:10469-10612:1:exon
subclass of: SO_0000010

39499527
type: Gene
SIO_000068: ncbigene

position:10469:1
position: 10469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10612:1
position: 10612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10469-10612:1:exon

DAT869_RS08790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33970
locus tag: DAT869_RS08790
old locus tag: DAT561_p0013
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013774697.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I toxin-antitoxin system toxin PepG1
translation: MKVSTKICERRRLLSAFETIQTILGFGMFTIALIGLVVKLLKNDNKK
SIO_010081: DAT869_RS08790
subclass of: SO_0000673
so part of: DAT869_RS08790
location: 10469..10612
location: region:10469-10612:1
so has part: feature:10469-10612:1:exon

WP_080964962.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10469-10612:1:exon

DAT869_RS08795
type: Gene
subclass of: SO_0000704
RO_0002162: 33970
locus tag: DAT869_RS08795
old locus tag: DAT561_p0014
so part of: sequence
location: 10774..10956
location: region:10774-10956:1
so has part: feature:10774-10956:1:exon
subclass of: SO_0000010

39499518
type: Gene
SIO_000068: ncbigene

position:10774:1
position: 10774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10956:1
position: 10956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10774-10956:1:exon

DAT869_RS08795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33970
locus tag: DAT869_RS08795
old locus tag: DAT561_p0014
inference: COORDINATES: protein motif:HMM:NF012743.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BRCT domain-containing protein
translation: MKNEYVVFTGILLSMTRQQAKALVYSLGGIYQSTVTQKTTLLVSGTSTIDLLDNFVWELV
SIO_010081: DAT869_RS08795
subclass of: SO_0000673
so part of: DAT869_RS08795
location: 10774..10956
location: region:10774-10956:1
so has part: feature:10774-10956:1:exon

WP_048593203.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10774-10956:1:exon

DAT869_RS08800
type: Gene
subclass of: SO_0000704
RO_0002162: 33970
locus tag: DAT869_RS08800
old locus tag: DAT561_p0016
so part of: sequence
location: 11213..12109
location: region:11213-12109:1
so has part: feature:11213-12109:1:exon
subclass of: SO_0000010

39499519
type: Gene
SIO_000068: ncbigene

position:11213:1
position: 11213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12109:1
position: 12109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11213-12109:1:exon

DAT869_RS08800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33970
locus tag: DAT869_RS08800
old locus tag: DAT561_p0016
inference: COORDINATES: protein motif:HMM:NF015288.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ETX/MTX2 family pore-forming toxin
translation: MKTKFISTFILLFTLCILGAKNAQAATFTNIDNDLNDLGTRYYRSKLADTYQGYYLLDREPQSVSSTYSIDGTPNTSSVNLNTKNINSLYVGDNVFNNNSNFDQTYNTASFTKTVTETTSTSNTRGIKFGGKGLNFKLPFFIDGNEVTGDFNSSETDTTTHQMQTTLLSNSQPVKVPAHKKYKVTVSLEQINYDGIVDYTATGKNLFNHISTRGLWVTWSGEPLLDTFYFSPSVEEECRALHSGQVVQISSEIKVNTADNSMSVNGQARVTGICGSRMVVTTYDITDGQQKFVSKKPL
SIO_010081: DAT869_RS08800
subclass of: SO_0000673
so part of: DAT869_RS08800
location: 11213..12109
location: region:11213-12109:1
so has part: feature:11213-12109:1:exon

WP_126347326.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11213-12109:1:exon

DAT869_RS08805
type: Gene
subclass of: SO_0000704
RO_0002162: 33970
locus tag: DAT869_RS08805
old locus tag: DAT561_p0018
so part of: sequence
location: 12848..12991
location: region:12848-12991:1
so has part: feature:12848-12991:1:exon
subclass of: SO_0000010

39499525
type: Gene
SIO_000068: ncbigene

position:12848:1
position: 12848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12991:1
position: 12991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12848-12991:1:exon

DAT869_RS08805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33970
locus tag: DAT869_RS08805
old locus tag: DAT561_p0018
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013774697.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I toxin-antitoxin system toxin PepG1
translation: MKVSTKIYERRRLLSAFETIQIILGFGMFTIALIGLVVKLLKNDNKK
SIO_010081: DAT869_RS08805
subclass of: SO_0000673
so part of: DAT869_RS08805
location: 12848..12991
location: region:12848-12991:1
so has part: feature:12848-12991:1:exon

WP_080965026.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12848-12991:1:exon

DAT869_RS08810
type: Gene
subclass of: SO_0000704
RO_0002162: 33970
locus tag: DAT869_RS08810
old locus tag: DAT561_p0019
so part of: sequence
location: 13154..13450
location: region:13154-13450:1
so has part: feature:13154-13450:1:exon
subclass of: SO_0000010

39499526
type: Gene
SIO_000068: ncbigene

position:13154:1
position: 13154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13450:1
position: 13450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13154-13450:1:exon

DAT869_RS08810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33970
locus tag: DAT869_RS08810
old locus tag: DAT561_p0019
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002415155.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BRCT domain-containing protein
translation: MKNEYVVFTGTLLSMTRQQAKALVYSLGGICQSTVTQKTTLLVSGISTIDLLTNDSCSEKRKEVENLIAKGYLISIINEKEFLNLANLKLNKLVNNSY
SIO_010081: DAT869_RS08810
subclass of: SO_0000673
so part of: DAT869_RS08810
location: 13154..13450
location: region:13154-13450:1
so has part: feature:13154-13450:1:exon

WP_048593205.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13154-13450:1:exon

DAT869_RS08815
type: Gene
subclass of: SO_0000704
RO_0002162: 33970
locus tag: DAT869_RS08815
old locus tag: DAT561_p0020
so part of: sequence
location: complement(13571..13921)
location: region:13571-13921:-1
so has part: feature:13571-13921:-1:exon
subclass of: SO_0000010

39499528
type: Gene
SIO_000068: ncbigene

position:13571:-1
position: 13571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13921:-1
position: 13921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13571-13921:-1:exon

DAT869_RS08815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33970
locus tag: DAT869_RS08815
old locus tag: DAT561_p0020
inference: COORDINATES: protein motif:HMM:NF036624.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5388 domain-containing protein
translation: MAGMLDDIQQKRSTLSRGAHIQVNSSINKDEIIKEKNNDKSIDTRSLPQNIRVDNGSRNTVNALGVLGYGDSQRETLKILLDNFISNLSDDEQKKIHELNEIYDKKDLKNYLSKKK
SIO_010081: DAT869_RS08815
subclass of: SO_0000673
so part of: DAT869_RS08815
location: complement(13571..13921)
location: region:13571-13921:-1
so has part: feature:13571-13921:-1:exon

WP_048593206.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13571-13921:-1:exon

DAT869_RS08820
type: Gene
subclass of: SO_0000704
RO_0002162: 33970
locus tag: DAT869_RS08820
old locus tag: DAT561_p0021
so part of: sequence
location: complement(13926..14747)
location: region:13926-14747:-1
so has part: feature:13926-14747:-1:exon
subclass of: SO_0000010

39499529
type: Gene
SIO_000068: ncbigene

position:13926:-1
position: 13926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14747:-1
position: 14747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13926-14747:-1:exon

DAT869_RS08820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33970
locus tag: DAT869_RS08820
old locus tag: DAT561_p0021
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003706882.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MKATVLSLANFKGGVGKTSTIGLVAYNMATKLNKKVLVIDFDAQGNITNLLMKTSLLINPELDNLLIENTLMSAIANSIPLNNIIINITNNLDLIPNAVDFSVYTRYLERNFTNEQDRMNFFLNLIEPLKDNYDYIFIDVPPTLSLLNDTAFMACDQIIVVLQTKERSLADAEVFIEYMINNIKNEYKPKLEVLGILPVLSKKNVAVDTEVLKAAINNWGAQWIFENMIFIMERVKRMDMTGITDNPTDIHDKRCHEKFIMVAKEIINRLERK
SIO_010081: DAT869_RS08820
subclass of: SO_0000673
so part of: DAT869_RS08820
location: complement(13926..14747)
location: region:13926-14747:-1
so has part: feature:13926-14747:-1:exon

WP_048593207.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13926-14747:-1:exon

DAT869_RS08825
type: Gene
subclass of: SO_0000704
RO_0002162: 33970
locus tag: DAT869_RS08825
so part of: sequence
location: 16691..16951
location: region:16691-16951:1
so has part: feature:16691-16951:1:exon
subclass of: SO_0000010

39499522
type: Gene
SIO_000068: ncbigene

position:16691:1
position: 16691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16951:1
position: 16951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16691-16951:1:exon

DAT869_RS08825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33970
locus tag: DAT869_RS08825
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEKVNQEICCFVSDFLESIEDHSKTFSLNEIERNYNKKKGNTLAEWVHFTNTQRLIITSKILKDKRMKRMYKPRANGGCWLLFYTN
SIO_010081: DAT869_RS08825
subclass of: SO_0000673
so part of: DAT869_RS08825
location: 16691..16951
location: region:16691-16951:1
so has part: feature:16691-16951:1:exon

WP_126347327.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16691-16951:1:exon

DAT869_RS08830
type: Gene
subclass of: SO_0000704
RO_0002162: 33970
locus tag: DAT869_RS08830
old locus tag: DAT561_p0024
so part of: sequence
location: 16989..17330
location: region:16989-17330:1
so has part: feature:16989-17330:1:exon
subclass of: SO_0000010

39499520
type: Gene
SIO_000068: ncbigene

position:16989:1
position: 16989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17330:1
position: 17330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16989-17330:1:exon

DAT869_RS08830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33970
locus tag: DAT869_RS08830
old locus tag: DAT561_p0024
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPLKSVKIPMKSLGERIEFIKHVETIGRTVRRGRMTTTVPEQEVYELMSAEHGSFTVTVPTSGGLEGDFYKKTIKLDTPKIVISPITAVNRGTGEVGVRPRMVLEAEKIELGE
SIO_010081: DAT869_RS08830
subclass of: SO_0000673
so part of: DAT869_RS08830
location: 16989..17330
location: region:16989-17330:1
so has part: feature:16989-17330:1:exon

WP_048593208.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16989-17330:1:exon

DAT869_RS08835
type: Gene
subclass of: SO_0000704
RO_0002162: 33970
locus tag: DAT869_RS08835
old locus tag: DAT561_p0025
so part of: sequence
location: 17335..17766
location: region:17335-17766:1
so has part: feature:17335-17766:1:exon
subclass of: SO_0000010

39499521
type: Gene
SIO_000068: ncbigene

position:17335:1
position: 17335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17766:1
position: 17766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17335-17766:1:exon

DAT869_RS08835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33970
locus tag: DAT869_RS08835
old locus tag: DAT561_p0025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002370297.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF961 family protein
translation: MAKEKPINFDNNEIPILLKESVGKVTFVSVRNDKFVNDAEGNRTDEIRAQSIEVSSEAQRENFNVDLVPTFNLSALELHFGDEIELLGVTTCTPWAMLPPNNNNVNNAVTGFSIMDEGIKKVLPNQTTNNFSKQNEGDKKKEK
SIO_010081: DAT869_RS08835
subclass of: SO_0000673
so part of: DAT869_RS08835
location: 17335..17766
location: region:17335-17766:1
so has part: feature:17335-17766:1:exon

WP_048593209.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17335-17766:1:exon

DAT869_RS09095
type: Gene
subclass of: SO_0000704
RO_0002162: 33970
locus tag: DAT869_RS09095
old locus tag: DAT561_p0027
so part of: sequence
location: 17949..18071
location: region:17949-18071:1
so has part: feature:17949-18071:1:exon
subclass of: SO_0000010

77169547
type: Gene
SIO_000068: ncbigene

position:17949:1
position: 17949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18071:1
position: 18071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17949-18071:1:exon

DAT869_RS09095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33970
locus tag: DAT869_RS09095
old locus tag: DAT561_p0027
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEEIEQESMSEFQSTVEVDRYFLIHFEDLAESYYFEYFVD
SIO_010081: DAT869_RS09095
subclass of: SO_0000673
so part of: DAT869_RS09095
location: 17949..18071
location: region:17949-18071:1
so has part: feature:17949-18071:1:exon

WP_263604228.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17949-18071:1:exon

DAT869_RS08840
type: Gene
subclass of: SO_0000704
RO_0002162: 33970
locus tag: DAT869_RS08840
old locus tag: DAT561_p0028
so part of: sequence
location: 18181..19437
location: region:18181-19437:1
so has part: feature:18181-19437:1:exon
subclass of: SO_0000010

39499524
type: Gene
SIO_000068: ncbigene

position:18181:1
position: 18181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19437:1
position: 19437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18181-19437:1:exon

DAT869_RS08840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33970
locus tag: DAT869_RS08840
old locus tag: DAT561_p0028
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002393264.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FtsK/SpoIIIE domain-containing protein
translation: MIGNNQYNIHFLLMNGLVVFCLFGLPALVIGLLFRWSRIHHGYMLWVNQRQTLGRMIVDNRYFLAESKTKNGNSGKKAKITYFPRIYYQRKDGLIWVRFPLDLSNFQKRFLEKGKEIEQSFKMDLMETNREVGFICFKFLADVRLNRLNIQDMVIKNGKIPLMKNIDWDIDGVPHGLIVGGTGGGKTFFIFSLLYAILQMGNVDVCDPKQSDLKRLKDIPVFEGHIFYGNGIKNKILATEQFMKDRFAYMEAQGIQTLGNYKEYGLKLYFLVVDEWAAYYDSLEKDVKTLREVMSALTQITLLGRQCGVFLILGMQRPDQKYFEGGLRDNLGLRVSLGKLSRIGYDMLYAGATNDKDYYNTKEKGRGYIDPGTSQVGEFYAPFIDSEVFNVFEEFGKFPKQEFPELIRPKEKETESSY
SIO_010081: DAT869_RS08840
subclass of: SO_0000673
so part of: DAT869_RS08840
location: 18181..19437
location: region:18181-19437:1
so has part: feature:18181-19437:1:exon

WP_232048068.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18181-19437:1:exon