Melissococcus plutonius strain DAT561 plasmid pMP1, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Melissococcus.
Whole genome sequence of Melissococcus plutonius DAT561
Submitted (29-JAN-2018) Contact:Kayo Okumura Obihiro University of Agriculture and Veterinary Medicine, Department of Veterinary Medicine; Inada-cho, Obihiro, Hokkaido 080-8555, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP018493.1.\nName:Okura M., Takamatsu D.\ninstitute:National Institute of Animal Health, National Agriculture\nand Food Research Organization\ndepartment:Division of Bacterial and Parasitic Disease.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3; Sequencher v. 5.2\nGenome Coverage :: 309x\nSequencing Technology :: ABI3730xI; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/27/2022 01:57:22\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,777\nCDSs (total) :: 1,700\nGenes (coding) :: 1,679\nCDSs (with protein) :: 1,679\nGenes (RNA) :: 77\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 4\nPseudo Genes (total) :: 21\nCDSs (without protein) :: 21\nPseudo Genes (ambiguous residues) :: 0 of 21\nPseudo Genes (frameshifted) :: 11 of 21\nPseudo Genes (incomplete) :: 9 of 21\nPseudo Genes (internal stop) :: 7 of 21\nPseudo Genes (multiple problems) :: 4 of 21\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013774812.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
primase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013774811.1
COORDINATES: similar to AA sequence:RefSeq:WP_005690651.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024627.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013774806.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774805.1
putative mucin/carbohydrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013774804.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013774803.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_017552716.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013774799.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014868627.1
GO:0005351 - carbohydrate:proton symporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005918772.1
COORDINATES: similar to AA sequence:RefSeq:WP_014868626.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774796.1
COORDINATES: similar to AA sequence:RefSeq:WP_010745108.1
COORDINATES: similar to AA sequence:RefSeq:WP_014868623.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774793.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774792.1
2-hydroxycarboxylate transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014868621.1
GO:0008771 - [citrate (pro-3S)-lyase] ligase activity [Evidence IEA]
GO:0006101 - citrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013774790.1
GO:0009346 - ATP-independent citrate lyase complex [Evidence IEA]
GO:0008815 - citrate (pro-3S)-lyase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002814479.1
COORDINATES: similar to AA sequence:RefSeq:WP_014214777.1
GO:0008815 - citrate (pro-3S)-lyase activity [Evidence IEA]; GO:0008814 - citrate CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013774787.1
GO:0050519 - holo-citrate lyase synthase activity [Evidence IEA]
GO:0051191 - prosthetic group biosynthetic process [Evidence IEA]
citrate lyase holo-[acyl-carrier protein] synthase
COORDINATES: similar to AA sequence:RefSeq:WP_013774786.1
GO:0046917 - triphosphoribosyl-dephospho-CoA synthase activity [Evidence IEA]
GO:0019361 - 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA biosynthetic process [Evidence IEA]
triphosphoribosyl-dephospho-CoA synthase CitG
COORDINATES: similar to AA sequence:RefSeq:WP_013774785.1
COORDINATES: similar to AA sequence:RefSeq:WP_002344597.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774782.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774781.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774780.1
bacterial Ig-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014868613.1
GO:0009986 - cell surface [Evidence IEA]
LPXTG cell wall anchor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013774778.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774777.1
DUF916 and DUF3324 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014868610.1
COORDINATES: similar to AA sequence:RefSeq:WP_014868596.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774767.1
COORDINATES: similar to AA sequence:RefSeq:WP_014868598.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774769.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004165911.1
COORDINATES: protein motif:HMM:NF023225.2
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014868601.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774771.1
COORDINATES: similar to AA sequence:RefSeq:WP_000281774.1
GO:0003941 - L-serine ammonia-lyase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0006565 - L-serine catabolic process [Evidence IEA]
L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_014868605.1
L-serine ammonia-lyase, iron-sulfur-dependent subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_014868606.1
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002338634.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00230
T-box leader; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_002307002.1
COORDINATES: similar to AA sequence:RefSeq:WP_016186523.1
COORDINATES: similar to AA sequence:RefSeq:WP_007131249.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774765.1
LysM peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014868595.1
GO:0008880 - glucuronate isomerase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013774762.1
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013774761.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774760.1
COORDINATES: similar to AA sequence:RefSeq:WP_014868589.1
COORDINATES: similar to AA sequence:RefSeq:WP_004896448.1
GO:0030163 - protein catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013774752.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774751.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774750.1
GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity [Evidence IEA]
GO:0016054 - organic acid catabolic process [Evidence IEA]
hydroxymethylglutaryl-CoA reductase, degradative
COORDINATES: similar to AA sequence:RefSeq:WP_014868583.1
GO:0004421 - hydroxymethylglutaryl-CoA synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013774748.1
COORDINATES: similar to AA sequence:RefSeq:WP_002361249.1
COORDINATES: similar to AA sequence:RefSeq:WP_014868582.1
COORDINATES: similar to AA sequence:RefSeq:WP_016178707.1
COORDINATES: similar to AA sequence:RefSeq:WP_010779723.1
PTS lactose/cellobiose transporter subunit IIA
COORDINATES: similar to AA sequence:RefSeq:WP_019723883.1
GO:0009341 - beta-galactosidase complex [Evidence IEA]
GO:0004565 - beta-galactosidase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003041224.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013774697.1
COORDINATES: protein motif:HMM:NF017548.2
COORDINATES: protein motif:HMM:NF037833.2
COORDINATES: similar to AA sequence:RefSeq:WP_009170801.1
COORDINATES: similar to AA sequence:RefSeq:WP_015769788.1
COORDINATES: similar to AA sequence:RefSeq:WP_014868572.1
COORDINATES: similar to AA sequence:RefSeq:WP_014868571.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013774738.1
COORDINATES: similar to AA sequence:RefSeq:WP_014868569.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774736.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013774735.1
DUF4097 family beta strand repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014868567.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774733.1
COORDINATES: similar to AA sequence:RefSeq:WP_014868566.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774731.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015509243.1
glycoside hydrolase family 3 N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003018653.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774727.1
GO:0008801 - beta-phosphoglucomutase activity [Evidence IEA]
GO:0046352 - disaccharide catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010742495.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774724.1
COORDINATES: similar to AA sequence:RefSeq:WP_014868560.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774722.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774721.1
COORDINATES: similar to AA sequence:RefSeq:WP_014868558.1
COORDINATES: similar to AA sequence:RefSeq:WP_014868557.1
RusA family crossover junction endodeoxyribonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_013774718.1
COORDINATES: similar to AA sequence:RefSeq:WP_014868556.1
COORDINATES: similar to AA sequence:RefSeq:WP_014868555.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774715.1
GO:0015293 - symporter activity [Evidence IEA]
cation:dicarboxylase symporter family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_014868553.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013774713.1
COORDINATES: similar to AA sequence:RefSeq:WP_014868551.1
type I toxin-antitoxin system toxin PepG1
COORDINATES: protein motif:HMM:NF025854.2
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_014868549.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774709.1
COORDINATES: similar to AA sequence:RefSeq:WP_003125503.1
COORDINATES: similar to AA sequence:RefSeq:WP_003125504.1
COORDINATES: similar to AA sequence:RefSeq:WP_004909592.1
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_016623072.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774694.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774385.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:TIGR01716.1
Rgg/GadR/MutR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013774693.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774692.1
COORDINATES: similar to AA sequence:RefSeq:WP_014868530.1
COORDINATES: similar to AA sequence:RefSeq:WP_014868529.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774689.1
COORDINATES: protein motif:HMM:NF038159.1
COORDINATES: protein motif:HMM:NF017000.2
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
lanthionine synthetase LanC family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011834695.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013774687.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774686.1
COORDINATES: similar to AA sequence:RefSeq:WP_014868515.1
COORDINATES: similar to AA sequence:RefSeq:WP_000403526.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774679.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774678.1