Leuconostoc citreum strain CBA3621 plasmid unnamed, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Leuconostoc.
Genome analyses of bacteria isolated from kimchi
Submitted (14-JUN-2019) Microbiology and Functionality Research Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju, Gwangju 61755, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP042411.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. v 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 713.05x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 01:30:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,948\nCDSs (total) :: 1,865\nGenes (coding) :: 1,852\nCDSs (with protein) :: 1,852\nGenes (RNA) :: 83\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 68\nncRNAs :: 3\nPseudo Genes (total) :: 13\nCDSs (without protein) :: 13\nPseudo Genes (ambiguous residues) :: 0 of 13\nPseudo Genes (frameshifted) :: 8 of 13\nPseudo Genes (incomplete) :: 5 of 13\nPseudo Genes (internal stop) :: 3 of 13\nPseudo Genes (multiple problems) :: 2 of 13\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_002816174.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002816175.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
replication initiation factor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002816176.1
COORDINATES: similar to AA sequence:RefSeq:WP_002816177.1
COORDINATES: similar to AA sequence:RefSeq:WP_002816178.1
COORDINATES: similar to AA sequence:RefSeq:WP_004905793.1
TcpE family conjugal transfer membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_002816180.1
COORDINATES: similar to AA sequence:RefSeq:WP_014975112.1
COORDINATES: similar to AA sequence:RefSeq:WP_010278033.1
COORDINATES: similar to AA sequence:RefSeq:WP_014975113.1
COORDINATES: similar to AA sequence:RefSeq:WP_016822651.1
COORDINATES: similar to AA sequence:RefSeq:WP_010015769.1
COORDINATES: similar to AA sequence:RefSeq:WP_010000732.1
COORDINATES: similar to AA sequence:RefSeq:WP_010015765.1
COORDINATES: similar to AA sequence:RefSeq:WP_014335292.1
COORDINATES: similar to AA sequence:RefSeq:WP_002816191.1
COORDINATES: similar to AA sequence:RefSeq:WP_010015762.1
COORDINATES: similar to AA sequence:RefSeq:WP_010277991.1
COORDINATES: similar to AA sequence:RefSeq:WP_014335259.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010277982.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_032488692.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014335262.1
COORDINATES: protein motif:HMM:NF013231.2
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017261612.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010276702.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011666815.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014335266.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014335267.1
COORDINATES: similar to AA sequence:RefSeq:WP_010691614.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014975082.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014335269.1
COORDINATES: similar to AA sequence:RefSeq:WP_014335270.1
COORDINATES: similar to AA sequence:RefSeq:WP_014975081.1
COORDINATES: protein motif:HMM:NF014533.2
GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013102149.1
COORDINATES: similar to AA sequence:RefSeq:WP_012304962.1
COORDINATES: similar to AA sequence:RefSeq:WP_014975100.1
COORDINATES: similar to AA sequence:RefSeq:WP_014335277.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012304965.1
COORDINATES: similar to AA sequence:RefSeq:WP_002816170.1
COORDINATES: similar to AA sequence:RefSeq:WP_010015787.1
COORDINATES: similar to AA sequence:RefSeq:WP_014975105.1
COORDINATES: similar to AA sequence:RefSeq:WP_010000717.1