Lentilactobacillus kefiri strain DH5 plasmid pDH5, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lentilactobacillus.
Genome sequence of Lactobacillus kefiri DH5 isolated from kefir
Submitted (08-JUN-2018) Center for One Health, Konkuk University, 120 Neungdong-ro, Kwangjin-gu, Seoul 05079, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP029972.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 03-MAR-2018\nAssembly Method :: de novo v. March-2018\nAssembly Name :: HGAP3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 277.0x\nSequencing Technology :: PacBio; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/24/2022 01:56:19\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 2,426\nCDSs (total) :: 2,347\nGenes (coding) :: 2,297\nCDSs (with protein) :: 2,297\nGenes (RNA) :: 79\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 3\nPseudo Genes (total) :: 50\nCDSs (without protein) :: 50\nPseudo Genes (ambiguous residues) :: 0 of 50\nPseudo Genes (frameshifted) :: 18 of 50\nPseudo Genes (incomplete) :: 26 of 50\nPseudo Genes (internal stop) :: 11 of 50\nPseudo Genes (multiple problems) :: 5 of 50\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_017867767.1
GO:0019152 - acetoin dehydrogenase activity [Evidence IEA]
GO:0045150 - acetoin catabolic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003553346.1
COORDINATES: similar to AA sequence:RefSeq:WP_003554887.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013727908.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010490096.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002328814.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003568375.1
GlsB/YeaQ/YmgE family stress response membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_003132622.1
COORDINATES: similar to AA sequence:RefSeq:WP_020751524.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012477736.1
IS6-like element ISS1N family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_003600575.1
COORDINATES: similar to AA sequence:RefSeq:WP_004271281.1
COORDINATES: similar to AA sequence:RefSeq:WP_003645617.1
COORDINATES: similar to AA sequence:RefSeq:WP_014386908.1
COORDINATES: protein motif:HMM:NF013753.2
COORDINATES: similar to AA sequence:RefSeq:WP_050892470.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003625174.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF028245.2
COORDINATES: similar to AA sequence:RefSeq:WP_007124643.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603791.1
COORDINATES: similar to AA sequence:RefSeq:WP_012552807.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
COORDINATES: similar to AA sequence:RefSeq:WP_002831168.1
COORDINATES: similar to AA sequence:RefSeq:WP_002823700.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005693113.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_012552803.1
COORDINATES: similar to AA sequence:RefSeq:WP_010625592.1
ParA superfamily DNA segregation protein PrgP
COORDINATES: similar to AA sequence:RefSeq:WP_010623328.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612162.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014940606.1
COORDINATES: similar to AA sequence:RefSeq:WP_008212160.1
GO:0015486 - glycoside-pentoside-hexuronide:cation symporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0006812 - cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010051905.1
COORDINATES: similar to AA sequence:RefSeq:WP_002330479.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS5-like element ISLpl3 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_003625203.1
COORDINATES: similar to AA sequence:RefSeq:WP_014919419.1
COORDINATES: similar to AA sequence:RefSeq:WP_013854956.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_012211549.1
COORDINATES: similar to AA sequence:RefSeq:WP_012212332.1
energy-coupling factor transporter transmembrane component T
COORDINATES: similar to AA sequence:RefSeq:WP_014919415.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014919416.1
COORDINATES: similar to AA sequence:RefSeq:WP_016366110.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00230
T-box leader; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_012391036.1
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024673.2
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_015474649.1
COORDINATES: similar to AA sequence:RefSeq:WP_003687813.1
COORDINATES: similar to AA sequence:RefSeq:WP_053338758.1
IS30-like element ISLpl1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_005691647.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003554089.1
COORDINATES: similar to AA sequence:RefSeq:WP_003554091.1
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: similar to AA sequence:RefSeq:WP_013355080.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003646535.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611862.1
COORDINATES: similar to AA sequence:RefSeq:WP_016176888.1
magnesium transporter CorA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005875614.1
COORDINATES: similar to AA sequence:RefSeq:WP_011668989.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011241744.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_003715897.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003555476.1
COORDINATES: similar to AA sequence:RefSeq:WP_002834562.1
type II toxin-antitoxin system YafQ family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_003586674.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_003623743.1