Halorubrum ezzemoulense strain Fb21 plasmid unnamed1, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.
Complete Genome Sequence of Halorubrum ezzemoulense Strain Fb21
Microbiol Resour Announc 8 (12), e00096-19 (2019)
Submitted (07-JAN-2019) Molecular and Cell Biology, University of Connecticut, 91 N Eagleville Rd, Storrs, CT 06269, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP034942.1.\nBacteria and source DNA available from Thane Papke.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.12; MiniASM v. 12/20/2018\nAssembly Name :: Halorubrum ezzemoulense Fb21\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina MiSeq; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 11:04:26\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,749\nCDSs (total) :: 3,667\nGenes (coding) :: 3,547\nCDSs (with protein) :: 3,547\nGenes (RNA) :: 82\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 2\nPseudo Genes (total) :: 120\nCDSs (without protein) :: 120\nPseudo Genes (ambiguous residues) :: 0 of 120\nPseudo Genes (frameshifted) :: 33 of 120\nPseudo Genes (incomplete) :: 88 of 120\nPseudo Genes (internal stop) :: 30 of 120\nPseudo Genes (multiple problems) :: 26 of 120\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004966419.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008847077.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007997459.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444884.1
COORDINATES: protein motif:HMM:NF012245.2
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012289646.1
IS4-like element ISH30 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_044951347.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014555220.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488244.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007190702.1
COORDINATES: similar to AA sequence:RefSeq:WP_006185521.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_013035018.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_004048670.1
COORDINATES: similar to AA sequence:RefSeq:WP_007343992.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006649192.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008445809.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444164.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
MraZ N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012464.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011222495.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222496.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458789.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458790.1
COORDINATES: similar to AA sequence:RefSeq:WP_006169676.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524496.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524494.1
COORDINATES: similar to AA sequence:RefSeq:WP_007992870.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]