Burkholderia glumae strain 257sh-1 plasmid plas2, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.
Complete genome sequence of Burkholderia glumae 257sh1
Submitted (11-FEB-2019) Plant Pathology, Louisiana State University, 302 Life Science Building, Baton Rouge, LA 70803, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP035903.1.\nBacteria and source DNA available from Jong Ham, 302 Life Science\nBuilding, Louisiana State University, Baton Rouge, LA 70803.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: De novo Assembly v. PacBio SMRT 2.3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 168.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/11/2023 22:22:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,930\nCDSs (total) :: 5,845\nGenes (coding) :: 5,646\nCDSs (with protein) :: 5,646\nGenes (RNA) :: 85\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 66\nncRNAs :: 4\nPseudo Genes (total) :: 199\nCDSs (without protein) :: 199\nPseudo Genes (ambiguous residues) :: 0 of 199\nPseudo Genes (frameshifted) :: 86 of 199\nPseudo Genes (incomplete) :: 165 of 199\nPseudo Genes (internal stop) :: 28 of 199\nPseudo Genes (multiple problems) :: 68 of 199\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012734088.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_076611183.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012734092.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012734093.1
COORDINATES: similar to AA sequence:RefSeq:WP_006402546.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012732717.1
COORDINATES: similar to AA sequence:RefSeq:WP_006401578.1
type VI secretion system Vgr family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013699816.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691781.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691782.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015875269.1
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_013699891.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611266.1
IS5-like element ISBugl2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012338661.1
COORDINATES: similar to AA sequence:RefSeq:WP_006752123.1
COORDINATES: similar to AA sequence:RefSeq:WP_014725969.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012732758.1
GO:0016787 - hydrolase activity [Evidence IEA]
alpha/beta hydrolase fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007182758.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012735330.1
COORDINATES: similar to AA sequence:RefSeq:WP_013699876.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700150.1
COORDINATES: similar to AA sequence:RefSeq:WP_003140520.1
COORDINATES: similar to AA sequence:RefSeq:WP_011546517.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700154.1
COORDINATES: protein motif:HMM:NF019530.2
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012735276.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735275.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732815.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735273.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012732813.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732812.1
GO:0019867 - outer membrane [Evidence IEA]
outer membrane protein assembly factor BamE
COORDINATES: similar to AA sequence:RefSeq:WP_012735272.1
protein-disulfide reductase DsbD N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012735271.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735270.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732808.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732807.1
COORDINATES: similar to AA sequence:RefSeq:WP_017424104.1
COORDINATES: similar to AA sequence:RefSeq:WP_017424105.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732804.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011875475.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735261.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_013699797.1
COORDINATES: similar to AA sequence:RefSeq:WP_017424109.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732893.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732710.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700073.1
COORDINATES: similar to AA sequence:RefSeq:WP_017425516.1
COORDINATES: similar to AA sequence:RefSeq:WP_012733754.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612028.1
COORDINATES: similar to AA sequence:RefSeq:WP_006493623.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691449.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013343496.1
COORDINATES: similar to AA sequence:RefSeq:WP_011879998.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691492.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013691491.1
COORDINATES: similar to AA sequence:RefSeq:WP_006754107.1
COORDINATES: similar to AA sequence:RefSeq:WP_006759705.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_013699954.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017425259.1
COORDINATES: similar to AA sequence:RefSeq:WP_018312239.1
COORDINATES: similar to AA sequence:RefSeq:WP_012733846.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012733847.1
COORDINATES: similar to AA sequence:RefSeq:WP_012733848.1
GO:0015291 - secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012733849.1
MotA/TolQ/ExbB proton channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012733850.1
COORDINATES: similar to AA sequence:RefSeq:WP_012734102.1
ABC transporter ATP-binding protein/permease
COORDINATES: similar to AA sequence:RefSeq:WP_015877611.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018420346.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012734101.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0004497 - monooxygenase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012734100.1
COORDINATES: similar to AA sequence:RefSeq:WP_012734097.1
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: protein motif:HMM:TIGR00254.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006757403.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017424861.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006476481.1
IS21-like element ISBcen28 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_006476480.1
COORDINATES: similar to AA sequence:RefSeq:WP_003615976.1
COORDINATES: similar to AA sequence:RefSeq:WP_012734056.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732736.1
IS21-like element ISBmu3 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_012213865.1
COORDINATES: similar to AA sequence:RefSeq:WP_006400880.1
COORDINATES: similar to AA sequence:RefSeq:WP_012734057.1
COORDINATES: similar to AA sequence:RefSeq:WP_012734099.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612008.1
COORDINATES: similar to AA sequence:RefSeq:WP_011625997.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611734.1
COORDINATES: similar to AA sequence:RefSeq:WP_012734062.1
COORDINATES: similar to AA sequence:RefSeq:WP_011879712.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006053174.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013094685.1
COORDINATES: similar to AA sequence:RefSeq:WP_012734068.1
GO:0004020 - adenylylsulfate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013689975.1
COORDINATES: similar to AA sequence:RefSeq:WP_013105981.1
COORDINATES: similar to AA sequence:RefSeq:WP_012734070.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_012492245.1
COORDINATES: similar to AA sequence:RefSeq:WP_012734073.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012732724.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732723.1
COORDINATES: similar to AA sequence:RefSeq:WP_012734074.1
COORDINATES: similar to AA sequence:RefSeq:WP_013699883.1
COORDINATES: similar to AA sequence:RefSeq:WP_004544985.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012733960.1
PAS domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611673.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_012734051.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558218.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012734078.1
hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012734079.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017423070.1
COORDINATES: similar to AA sequence:RefSeq:WP_013592781.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015877384.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611281.1
COORDINATES: protein motif:HMM:NF024997.2
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_017425513.1
COORDINATES: similar to AA sequence:RefSeq:WP_006023997.1
GO:0009425 - bacterial-type flagellum basal body [Evidence IEA]
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]; GO:0006935 - chemotaxis [Evidence IEA]
flagellar basal body-associated protein FliL
COORDINATES: similar to AA sequence:RefSeq:WP_012734086.1
COORDINATES: similar to AA sequence:RefSeq:WP_014200080.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014427210.1
COORDINATES: similar to AA sequence:RefSeq:WP_012734091.1
COORDINATES: similar to AA sequence:RefSeq:WP_017423524.1
COORDINATES: similar to AA sequence:RefSeq:WP_006490508.1
COORDINATES: similar to AA sequence:RefSeq:WP_006490501.1