Burkholderia glumae strain 257sh-1 plasmid plas1, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.
Complete genome sequence of Burkholderia glumae 257sh1
Submitted (11-FEB-2019) Plant Pathology, Louisiana State University, 302 Life Science Building, Baton Rouge, LA 70803, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP035902.1.\nBacteria and source DNA available from Jong Ham, 302 Life Science\nBuilding, Louisiana State University, Baton Rouge, LA 70803.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: De novo Assembly v. PacBio SMRT 2.3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 168.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/11/2023 22:22:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,930\nCDSs (total) :: 5,845\nGenes (coding) :: 5,646\nCDSs (with protein) :: 5,646\nGenes (RNA) :: 85\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 66\nncRNAs :: 4\nPseudo Genes (total) :: 199\nCDSs (without protein) :: 199\nPseudo Genes (ambiguous residues) :: 0 of 199\nPseudo Genes (frameshifted) :: 86 of 199\nPseudo Genes (incomplete) :: 165 of 199\nPseudo Genes (internal stop) :: 28 of 199\nPseudo Genes (multiple problems) :: 68 of 199\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008209286.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012732793.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732792.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
cytochrome c biogenesis CcdA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019939641.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF024881.2
COORDINATES: protein motif:HMM:NF012312.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015449101.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732786.1
COORDINATES: similar to AA sequence:RefSeq:WP_018231618.1
GO:0016740 - transferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
TIGR04283 family arsenosugar biosynthesis glycosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012732784.1
TIGR04282 family arsenosugar biosynthesis glycosyltransferase
COORDINATES: protein motif:HMM:TIGR03169.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012732781.1
bifunctional TVP38/TMEM64 family protein/FAD-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_019916305.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732779.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732778.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732777.1
COORDINATES: similar to AA sequence:RefSeq:WP_011280665.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF028235.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012732774.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012732772.1
COORDINATES: similar to AA sequence:RefSeq:WP_018002676.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732770.1
COORDINATES: protein motif:HMM:NF018264.2
COORDINATES: similar to AA sequence:RefSeq:WP_012732768.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959219.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732766.1
putative DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012732765.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732764.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732763.1
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific [Evidence IEA]
Hg(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012732762.1
COORDINATES: similar to AA sequence:RefSeq:WP_013722692.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012732760.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700154.1
COORDINATES: similar to AA sequence:RefSeq:WP_011546517.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012433046.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
low affinity iron permease family protein
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012732719.1
COORDINATES: similar to AA sequence:RefSeq:WP_020068335.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732718.1
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012732717.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732716.1
GO:0015627 - type II protein secretion system complex [Evidence IEA]
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
type II secretion system minor pseudopilin GspI
COORDINATES: similar to AA sequence:RefSeq:WP_076611183.1
programmed frameshift; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017425516.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700073.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732710.1
COORDINATES: similar to AA sequence:RefSeq:WP_019936402.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019936403.1
COORDINATES: similar to AA sequence:RefSeq:WP_006413674.1
COORDINATES: similar to AA sequence:RefSeq:WP_006413656.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_006749798.1
COORDINATES: similar to AA sequence:RefSeq:WP_012734036.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_006482109.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732804.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017424105.1
COORDINATES: similar to AA sequence:RefSeq:WP_017424104.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732807.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735269.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735270.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691741.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732811.1
protein-disulfide reductase DsbD N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012732812.1
GO:0019867 - outer membrane [Evidence IEA]
outer membrane protein assembly factor BamE
COORDINATES: similar to AA sequence:RefSeq:WP_012732813.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735273.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012732815.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735275.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735276.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732818.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012732819.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735279.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735280.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732821.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732822.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735283.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732824.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_011695074.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_012735286.1
COORDINATES: similar to AA sequence:RefSeq:WP_006487379.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_012732827.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732828.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735290.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732830.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_012732831.1
COORDINATES: similar to AA sequence:RefSeq:WP_009901192.1
COORDINATES: similar to AA sequence:RefSeq:WP_020190115.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732833.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732834.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732835.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_012735294.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:WP_009242082.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_012735295.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732840.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012735298.1
GO:0030638 - polyketide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007177720.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735299.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735300.1
RHS repeat-associated core domain-containing protein
COORDINATES: protein motif:HMM:NF020904.2
COORDINATES: similar to AA sequence:RefSeq:WP_011038220.1
COORDINATES: protein motif:HMM:NF016255.2
COORDINATES: similar to AA sequence:RefSeq:WP_012732851.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732852.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012732853.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732854.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_015876349.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735304.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735306.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735307.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735308.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732859.1
COORDINATES: similar to AA sequence:RefSeq:WP_017424812.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732861.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735310.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735311.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735312.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735313.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735314.1
COORDINATES: protein motif:HMM:TIGR03187.1
COORDINATES: similar to AA sequence:RefSeq:WP_006763800.1
COORDINATES: similar to AA sequence:RefSeq:WP_018421943.1
COORDINATES: similar to AA sequence:RefSeq:WP_006476481.1
IS21-like element ISBcen28 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_006476480.1
COORDINATES: similar to AA sequence:RefSeq:WP_011695098.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700126.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732889.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732888.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732887.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012732886.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732885.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732884.1
COORDINATES: similar to AA sequence:RefSeq:WP_020379714.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732882.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732881.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015875269.1
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_013699891.1
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_012734070.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019346 - transsulfuration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018420281.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732738.1
COORDINATES: protein motif:HMM:NF022062.2
COORDINATES: similar to AA sequence:RefSeq:WP_013691818.1
GO:0051782 - negative regulation of cell division [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
translesion DNA synthesis-associated protein ImuA
COORDINATES: similar to AA sequence:RefSeq:WP_012211068.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735330.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735344.1
COORDINATES: similar to AA sequence:RefSeq:WP_009896547.1
COORDINATES: similar to AA sequence:RefSeq:WP_004549440.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875910.1
COORDINATES: similar to AA sequence:RefSeq:WP_013699947.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612008.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007648091.1
COORDINATES: similar to AA sequence:RefSeq:WP_012734062.1
COORDINATES: similar to AA sequence:RefSeq:WP_006402546.1
COORDINATES: similar to AA sequence:RefSeq:WP_003269001.1
COORDINATES: similar to AA sequence:RefSeq:WP_012734074.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012733754.1
COORDINATES: similar to AA sequence:RefSeq:WP_007736805.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732800.1
COORDINATES: protein motif:HMM:NF016658.2
COORDINATES: similar to AA sequence:RefSeq:WP_012732798.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012732797.1
YiiX/YebB-like N1pC/P60 family cysteine hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_012732796.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732795.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
Some members of this family are selenoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
arsenosugar biosynthesis radical SAM protein ArsS
COORDINATES: similar to AA sequence:RefSeq:WP_013516309.1
COORDINATES: similar to AA sequence:RefSeq:WP_007739721.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732791.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732790.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732789.1
COORDINATES: similar to AA sequence:RefSeq:WP_014900632.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732767.1
COORDINATES: protein motif:HMM:NF021364.2
COORDINATES: similar to AA sequence:RefSeq:WP_011485652.1
COORDINATES: protein motif:HMM:NF025045.2