Zymoseptoria tritici IPO323 chromosome 6, whole genome shotgun sequence.
Zymoseptoria tritici IPO323 (Mycosphaerella graminicola IPO323)
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Dothideomycetidae; Mycosphaerellales; Mycosphaerellaceae; Zymoseptoria.
Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis
Submitted (06-FEB-2020) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (18-MAY-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM001201.\nURL -- http://www.jgi.doe.gov/Mgraminicola\nJGI Project ID: 4000758\nThe DNA was provided by G.H.J. Kema (gert.kema@wur.nl)\nThe strain is available from Fungal Biodiversity Center,\nhttp://www.cbs.knaw.nl\nContacts: Stephen B. Goodwin (sgoodwin@purdue.edu)\n Gert H. J. Kema (gert.Kema@wur.nl)\n Igor Grigoriev (ivgrigoriev@lbl.gov)\nAssembly and annotation done by JGI.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: JAZZ v. 1.0\nAssembly Name :: MYCGR v2.0\nGenome Coverage :: 8.9X\nSequencing Technology :: Sanger\n##Genome-Assembly-Data-END##\n\n##Metadata-START##\nOrganism Display Name :: Mycosphaerella graminicola IPO323\nGOLD Stamp ID :: Gi00795\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##
culture from epitype of Zymoseptoria tritici
predicted involved in secondary metabolite synthesis
putative major facilitator superfamily transporter
MFS-MDR transporter belonging to the DHA2 subfamily. These type of MFS transporters are implicated in MDR and secretion of fungal secondary metabolites.
Has EST support. probable full cDNA sequence (multiple ESTs)
Probable Mycosphaerella-specific small protein. Unknown function. Probable novel gene
involved in protein folding; probably reticulum endoplasmic localized; it contains C-terminus HDEL motif.
possible pathogenesis-related protein precursor. Similar to plant PR proteins. conserved hypothetical secreted protein, containing SCP extracellular domain
flavin-containig amine oxidoreductase, pyridine nucleotide-disulphide oxidoreductase, predicted extracelular
putative beta-glucuronidase glycoside hydrolase family 2
Beta-Glucuronidase (Glycoside Hydrolase Family 2)
metallocarboxypeptidase A, Zn_pept domain, carboxypeptidase activation peptide M14, similar to protein 83711, (estExt_fgenesh2_pg.C_30534) maybe gene family
SWI/SNF chromatin remodeling complex protein
SWI-SNF chromatin remodeling complex, Snf5 subunit
MFS-MDR transporter belonging to the DHA1 subfamily. These type of MFS transporters are implicated in MDR Note: this model is located adjacent to a NRPS with high homology to toxA synthetase and next to a model containing an AMP binding domain module of NRPS.
putative cdc25-like protein tyrosine phosphatase
secreted protein, putative, with esterase/lipase activity. Probably expressed and secreted during the infection cycle of the pathogen. Probable involved in pathogenesis.
P450 putatively acting on aromatic compounds. p450 with some similarity to ent-kaurene oxidase (gibberellin pathway) and gene model E_GW.1.620.1 which is part of a putative cyclic terpene gene cluster. It is part of region (cluster?) containing a several genes potentially involved in the utilization/modification of phenolic compounds.
similar to fungal RNA polymeraseII, large subunit and tobacco cell wall protein, proline rich predicted protein, secreted
2,3 dihydroxybenzoic acid decarboxylase-like protein
Similar to 2,3 dihydroxybenzoic acid decarboxylase
salicylaldehyde/vanillin dehydrogenase-like protein
Similar to salicylaldehyde/vanillin dehydrogenase.
putative (CpdS), predicted extracellular (kNN)
hypothetical protein of unknown function, similar to gi|169600875|ref|XP_001793860.1| hypothetical protein SNOG_03290 [Phaeosphaeria nodorum SN15]
Belongs to Glycosyl transferase, group 1
P450 with unknown function. This model ha very low similarity with known or predicted p450s
Histone H4; core histone required for chromatin assembly and chromosome function
Histone H3, core histone required for chromatin assembly and chromosome function
cytochrome p450, monooxygenase, N-methyltransferase, involved in secondary metabolites biosynthesis, transport, and catabolism of environmental toxins and mutagens, electron transference
Acyl-CoA:sterol acyltransferase, endoplasmic reticulum enzyme that contributes the major sterol esterification activity in the absence of oxygen
Xylan 1,4-Beta-Xylosidase (Glycosyl Hydrolase Family 43)
hypothetical protein, putative COG4850 superfam protein, similar to gi|145234995|ref|XP_001390146.1| hypothetical protein An03g02510 [Aspergillus niger, predicted secreted
DNA-directed RNA polymerase I subunit RPA135
Putatiave homolog of Saccharomyces cerevisiae RAD26, a DNA-dependent ATPase that stimulates strand exchange by modifying the topology of double-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA
Ca(2+)/Mn(2+)-transporting P-type ATPase PMR1
ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
SPT3, positive regulator of Ty transcription
In Saccharomyces this gene expresses a subunit of the SAGA and SAGA-like transcriptional regulatory complexes, interacts with Spt15p to activate transcription of some RNA polymerase II-dependent genes, also functions to inhibit transcription at some promoters
ACP1 mitochondrial matrix acyl carrier protein
Mitochondrial matrix acyl carrier protein, involved in biosynthesis of octanoate, which is a precursor to lipoic acid
p450 potentially involved in the degradation of fatty acids and/or alkanes. Multiple seq alignment followed by NJ analysis clustered this model with gi41079162; gi3395458, gi29469881, gi70984521 (alkane or fatty acids monooxygenases), and the models GW.2.447.1 ESTEXT_GWP_GW1.C_110666, E_GW.6.936.1, ESTEXT_FGENESH2_PM.C_50060, ESTEXT_GWP_GW1.C_90605.
Ca2+-modulated nonselective cation channel polycystin
nonselective cation channel involved in the transduction of a variety of external signal.
endo-1,4-beta xylanase glycoside hydrolase family 11
Endo-1,4-beta xylanase (Glycoside hydrolase family 11)
Acetyl Xylan Esterase/Acetylesterase (Signal p secreted)
Similar to Saccharomyces cerevisiae SWD3, an essential subunit of the COMPASS (Set1C) complex, which methylates Rad6p ubiquitinated histone H3 on lysine 4 and is required in transcriptional silencing near telomeres
COP9 constitutive photomorphogenic homolog subunit 3
esterase, lipase, thioesterase, predicted secreted with high probability, but contains one transmembranal domain. May be involved in catalytic activity and/or signal transduction mechanisms: acetylcholinesterase and butyrylcholinesterase.
P450 potentially involved in the biosynthesis of a nonribosomally synthesized metabolite or mThis model is located next to a NRPS Multiple seq alignment and NJ analysis clustered this model with FGENESH2_PG.C_SCAFFOLD_12000140 (a P450 located in a cluster with a hybrid PKS/PS and a geranylgeranyl pyrophosphate synthase), gi 46114844 (a pP450 located close to a NRPS in G.
NRPS5 single domain, non-ribosomal peptide synthase-like protein
beta ketoadipate:succinyl-CoA transferase, TR1
Putative beta ketoadipate:succinyl-CoA, part of the beta ketoadipate pathway.
A member of the MYST acetyltransferase family similar to the Saccharomyces cerevisiae SAS2 protein
serine/threonine protein kinase, CMGC family, possible function in cell cycle
chromosome condensation complex Condensin, subunit D2
One of the non-SMC subunits of the condensin protein complex required for proper chromosome condensation and segregation
dihydrolipoyl dehydrogenase; LDP-Glc; LDP-Val; dehydrolipoate dehydrogenase; diaphorase; dihydrolipoamide:NAD+ oxidoreductase; dihydrolipoic dehydrogenase; dihydrothioctic dehydrogenase; lipoamide dehydrogenase (NADH); lipoamide oxidoreductase (NADH); lipoamide reductase; lipoamide reductase (NADH2); lipoate dehydrogenase; lipoic acid dehydrogenase; lipoyl dehydrogenase
ATP-binding cassette Fe/S cluster precursor transporter ATM1
ABC transporter, ABC-B family, ATM / HMT type. ATM1 is an ABC transporter that is expressed in the mitochondia. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins.
serine/threonine protein kinase, CMGC family
ABC transporter, ABC-C family, MRP type. TC3.A.1.208.These transporters mainly transport conjugated compounds and can be involved in metal resistance.
COQ1 probable hexaprenyl diphosphate synthase
Probable Hexaprenyl Diphosphate Synthase
Oligopeptide transporter superfamily protein with 14 predicted transmembrane regions.
P450 with unknown function. Comparison with characterized p450s did not yield highly significant matches
phosphogluconate dehydrogenase (decarboxylating); phosphogluconic acid dehydrogenase; 6-phosphogluconic dehydrogenase; 6-phosphogluconic carboxylase; 6-phosphogluconate dehydrogenase (decarboxylating); 6-phospho-D-gluconate dehydrogenase
In yeast this transcription factor is part of a branched two-component signaling system (Hog1 pathway) required for optimal induction of heat-shock genes in response to oxidative stress and is involved in osmoregulation
zinc-dependent peptidase and protease precursor, secreted, metallopeptidase, zinc-binding site
U3 small nucleolar ribonucleoprotein protein imp3
Beta-Glucosidase (Glycosyl Hydrolase Family 3) (Signal P secreted)
putative dolichyl-diphosphooligosaccharide-protein glycotransferase
dolichyl-diphosphooligosaccharide-protein glycotransferase, putative
MgCYR1 is a fungal adenylate cyclase (AC) with five domains, an N-terminal RA (Ras association)domain, three middle leucine-rich repeat (LRR) domain, a protein phosphatase 2C (PP2C)domain which is a Mn++ or Mg++ dependent protein serine/threonine phosphatase and a catalytic adenylate cyclase (AC) domain
. Contains match to PFAM PF00089 domain (trypsin).