Sphingobium fuliginis strain KK22 plasmid p2, complete sequence.
type: Entry
definition: Sphingobium fuliginis strain KK22 plasmid p2, complete sequence.
sequence version: NZ_CP060038.1
sequence date: 2023-02-24
sequence: sequence
division: CON
label: NZ_CP060038.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00011324
keyword: RefSeq
source: Sphingobium fuliginis
organism: Sphingobium fuliginis
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.
reference: 1
references: 33414343
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP060038.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/24/2023 08:54:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,715\nCDSs (total) :: 4,649\nGenes (coding) :: 4,581\nCDSs (with protein) :: 4,581\nGenes (RNA) :: 66\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 3\nPseudo Genes (total) :: 68\nCDSs (without protein) :: 68\nPseudo Genes (ambiguous residues) :: 0 of 68\nPseudo Genes (frameshifted) :: 26 of 68\nPseudo Genes (incomplete) :: 53 of 68\nPseudo Genes (internal stop) :: 10 of 68\nPseudo Genes (multiple problems) :: 16 of 68\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 20017
topology: circular
so has quality: SO_0000988
location: 1..20017
location: region:1-20017:1
RO_0002162: 336203

NZ_CP060038
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00011324
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of Sphingobium barthaii KK22, a High-Molecular-Weight Polycyclic Aromatic Hydrocarbon-Degrading Soil Bacterium
author: Mori, J.F.
author: Kanaly, R.A.
journal: Microbiol Resour Announc 10 (1), e01250-20 (2021)
pubmed: 33414343
comments: Publication Status: Online-Only

33414343
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Mori, J.F.
author: Kanaly, R.A.
journal: Submitted (06-AUG-2020) Graduate School of Nanobiosciences, Yokohama City University, 22-2 Seto, Kanazawa-ku, Yokohama 236-0027, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20017:1
position: 20017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20017:1:source
so part of: sequence
organism: Sphingobium fuliginis
mol type: genomic DNA
strain: KK22
type material: type strain of Sphingobium barthaii
plasmid: p2

336203
type: Taxonomy
SIO_000068: taxonomy

H5V43_RS23335
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
locus tag: H5V43_RS23335
old locus tag: H5V43_23335
so part of: sequence
location: complement(join(19765..20017,1..341))
location: region:1-20017:-1
so has part: feature:1-341:-1:exon
so has part: feature:19765-20017:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20017:-1
position: 20017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-341:-1:exon

position:341:-1
position: 341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:19765-20017:-1:exon

position:19765:-1
position: 19765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

H5V43_RS23335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
locus tag: H5V43_RS23335
old locus tag: H5V43_23335
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MALIGYARVSTADQKLSLQLDALNAAGCDRIFDDHASGAKADRPGLAEALAYLRSGDTLVVWKLDRLGRSMSHLIEKVGELATRGIGFRSLTENIDTTTSGGMLVFNIFGSLAQFERDLIRERTHAGLKAARERGRPGGRRPVVTPDKLRKAREHIASGLTVREAAARLKIGKTALYKALEATEKNTKSQRSRSVRS
SIO_010081: H5V43_RS23335
subclass of: SO_0000673
so part of: H5V43_RS23335
location: complement(join(19765..20017,1..341))
location: region:1-20017:-1
so has part: feature:1-341:-1:exon
so has part: feature:19765-20017:-1:exon

WP_013039114.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-341:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:19765-20017:-1:exon

H5V43_RS23340
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
locus tag: H5V43_RS23340
old locus tag: H5V43_23340
so part of: sequence
location: 481..3438
location: region:481-3438:1
so has part: feature:481-3438:1:exon
subclass of: SO_0000010

position:481:1
position: 481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3438:1
position: 3438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:481-3438:1:exon

H5V43_RS23340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
locus tag: H5V43_RS23340
old locus tag: H5V43_23340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012975307.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MARRRLVSAEIWAGHYGAPLDEREIARHYTLTGDDLEIVGRRRGDATRLGYAMLLLYMRWPGRALEAGEVPPAPVLAYVAQQLGVAPEAFADYAHRDQTRREHLVEIRRSHGFRIFDRKAFHEVVAFSIPIAQTIVHPGQMAGVIVDELRRRQILLPSSSVLEAVLRRARQQAEQLTYEVLTNGLRPDTLQGLDDLLARRTGQAATWLSWLRNAPQSPAARNILRLIERLTHIRALDLDRARADMIPALTFDRLADEGSRITPQHLGELNALRRHATLAAQGIRLEESLTDATLTMFDKLLGSMSRRAENRTRDKALKTVRELQGHLRTLTGSCRILIEARTNGVDSLAQIEALDWQRFAVAVARAEVLGRPETVDRTAELIERHRTVKLFAGAFLNTFEFRGAGAVQGLLSALTIIAELYRTGKRRLPDRVPLRFVPSAWRPFVLRDGIVDRAAYELCALSQLRERLRAGDIWVSGSRQFRDFDSYLIPPATFDALREKGPLPLAIETDFDRHIEERRARLDTAIEQVTVLARQGELPQVRLDESGLIISPLKAATPPATEIARRAAYDRLPRVKITDLLLEVDAWTGFSECFIHRRSGREADDRNALLTVILADGINLGLTRMAETCRGASLRQLAHLHDWHISEAAYGEALGRLIDAHRAMPLAALWGDGTTSSSDGQQFHAGGRGAAIGDINARSGNEPGVAFYTHVSDRYDPFATRVIAATAGEAPYVLDGLLYQQTGLTIEEHYTDTGGASDHVFGLMPFFGYRFAPRLRDIKQRRLHLLPGQEAGPLLAGMTAEPIALGHVAAHWDELLRFATSIRTGTATASAMLRRLSAYPRQNGLALAMRELGRLERSIFMLDWLRDIDLRRRTQAGLNKGEARNALARALFFNQLGELRDRRFENQTYRASGLNLLVAAIILWNTRYLEVALADIGTPDEIARHVAPLGWEHISLTGDYSWNVEDRPDPDVLRPLRAISSLLAA
SIO_010081: H5V43_RS23340
subclass of: SO_0000673
so part of: H5V43_RS23340
location: 481..3438
location: region:481-3438:1
so has part: feature:481-3438:1:exon

WP_011627729.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:481-3438:1:exon

H5V43_RS23345
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
locus tag: H5V43_RS23345
old locus tag: H5V43_23345
so part of: sequence
location: 3662..4018
location: region:3662-4018:1
so has part: feature:3662-4018:1:exon
subclass of: SO_0000010

position:3662:1
position: 3662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4018:1
position: 4018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3662-4018:1:exon

H5V43_RS23345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
locus tag: H5V43_RS23345
old locus tag: H5V43_23345
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015486490.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MSDETPQRIELVFYRTEAGNMPVRDWLLGLDEAHRREIGQDLQRVQFRWPVGMPLVRPMGKGLFEVRTSLPDGTIARVLFCFHGGELYALHGFIKKAQKTPAGDLDIARKRQKEIDNG
SIO_010081: H5V43_RS23345
subclass of: SO_0000673
so part of: H5V43_RS23345
location: 3662..4018
location: region:3662-4018:1
so has part: feature:3662-4018:1:exon

WP_025550887.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3662-4018:1:exon

H5V43_RS23350
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
locus tag: H5V43_RS23350
old locus tag: H5V43_23350
so part of: sequence
location: 4011..4295
location: region:4011-4295:1
so has part: feature:4011-4295:1:exon
subclass of: SO_0000010

position:4011:1
position: 4011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4295:1
position: 4295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4011-4295:1:exon

H5V43_RS23350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
locus tag: H5V43_RS23350
old locus tag: H5V43_23350
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010189087.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: XRE family transcriptional regulator
translation: MADNKHRGDTLDSFLEEQGDLAEFQARAIKEVIAWQLAEAMKARKLSKSRLATMMHTSRTQVDRVLDPNDGNVTIETLQRAAAVVGRRVQLGLV
SIO_010081: H5V43_RS23350
subclass of: SO_0000673
so part of: H5V43_RS23350
location: 4011..4295
location: region:4011-4295:1
so has part: feature:4011-4295:1:exon

WP_025550889.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4011-4295:1:exon

H5V43_RS23355
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
locus tag: H5V43_RS23355
old locus tag: H5V43_23355
so part of: sequence
location: complement(4292..4603)
location: region:4292-4603:-1
so has part: feature:4292-4603:-1:exon
subclass of: SO_0000010

position:4292:-1
position: 4292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4603:-1
position: 4603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4292-4603:-1:exon

H5V43_RS23355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
locus tag: H5V43_RS23355
old locus tag: H5V43_23355
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004213321.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraD
translation: MHRRERTRHLIELGGLVQKAGLVDLTDDDRATLYGAMLDLAAKAREDGNALELWKRRGKRAFDVEAGETDASPSRETGPLKRSGGLGRREPSAGGRFRVSRTD
SIO_010081: H5V43_RS23355
subclass of: SO_0000673
so part of: H5V43_RS23355
location: complement(4292..4603)
location: region:4292-4603:-1
so has part: feature:4292-4603:-1:exon

WP_025550891.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4292-4603:-1:exon

H5V43_RS23360
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
locus tag: H5V43_RS23360
old locus tag: H5V43_23360
pseudo: true
so part of: sequence
location: complement(<4710..4946)
location: region:4710-4946:-1
so has part: feature:4710-4946:-1:exon
subclass of: SO_0000010

position:4710:-1
position: 4710
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:4946:-1
position: 4946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4710-4946:-1:exon

H5V43_RS23360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
locus tag: H5V43_RS23360
old locus tag: H5V43_23360
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007686162.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: conjugal transfer protein TraD
SIO_010081: H5V43_RS23360
subclass of: SO_0000673
so part of: H5V43_RS23360
location: complement(<4710..4946)
location: region:4710-4946:-1
so has part: feature:4710-4946:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4710-4946:-1:exon

H5V43_RS23365
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
locus tag: H5V43_RS23365
old locus tag: H5V43_23365
so part of: sequence
location: complement(4943..5659)
location: region:4943-5659:-1
so has part: feature:4943-5659:-1:exon
subclass of: SO_0000010

position:4943:-1
position: 4943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5659:-1
position: 5659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4943-5659:-1:exon

H5V43_RS23365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
locus tag: H5V43_RS23365
old locus tag: H5V43_23365
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008924511.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: O-methyltransferase
translation: MARVPDYPSPNAEKWLAVDTYFASLLAPHDAALDDVLAANQEAGLPTHDVSPAQGKMLALFVAMTKARHILEIGTLGGYSTIWLARALPASGRIVTIEASAVHADVARANFDRAGVADRVELRVGKALDVLPSLEVDAASPFDLIFIDADKPNNPAYLDWALRLSRPGTVIIGDNVVRGGAVTDPDSTDPNVRGVRAFLERIAADPRLDATAIQTVGEKGWDGFALAIVKDVDEGEKG
SIO_010081: H5V43_RS23365
subclass of: SO_0000673
so part of: H5V43_RS23365
location: complement(4943..5659)
location: region:4943-5659:-1
so has part: feature:4943-5659:-1:exon

WP_193666911.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4943-5659:-1:exon

H5V43_RS23370
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
gene: traA
locus tag: H5V43_RS23370
old locus tag: H5V43_23370
so part of: sequence
location: 5813..8731
location: region:5813-8731:1
so has part: feature:5813-8731:1:exon
subclass of: SO_0000010

position:5813:1
position: 5813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8731:1
position: 8731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5813-8731:1:exon

H5V43_RS23370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
gene: traA
locus tag: H5V43_RS23370
old locus tag: H5V43_23370
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020817746.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Ti-type conjugative transfer relaxase TraA
translation: MAIYHFSAKVISRANGSSAVASAAYRAAQRLPDERLGRHHDFSNKAGVVHSEIMLPEGAPEHLYDRATLWNEVEAGEKRKDAQLAREVEFSIPRELNQEQGVQLARDFVEKQFVERGMVADLNVHWDYAEDGSPKPHAHVMLSMREVGPEGFGQKVRDWNSTELLKGWREAWADHVNERLASLDIDARIDHRTLEAQGIELEPQHKIGPAGSRRLTRGEDAERADDHLRIAHENGEKIIARPEIALDAITRQQATFTRHDLAMFVHRHSDGKEQFDQAMSAVRTSPELVALGTDGKGEERFTSRDMIAVEHRLSQAADGLAGDDRHGVSDRHRERAVAAASAKGLTLSAEQRGALDHITGRDGLASVVGYAGSGKSAMLGVAREAWEAEGYTVRGAALSGIAAENLEGGSAIPSRTLASLEYQWEQGREQLGSRDVLVIDEAGMIGTRQMERVLSHAQQAGAKVVMVGDPEQLQAIEAGAAFRSLAERHGAAEIGEIRRQREEWQRDATRALATGRTGEAVHAYDQHGMVQAADTRELARAELIDTWDAQRRADPDKSRIILTHTNAEVRDLNEAARECLRDAGELGDDVRVSAERGARDFAQGDRIMFLKNERGLGVKNGTLGEIEQVSPERMSVRLDDGRSVAFDLKDYAHVDHGYAATIHKSQGVTVDRAHVLATPGMDRHSAYVALSRHREGVQLHYGRDDFADQRQLTRTLSRERAKDMASDYPVDRDAEVRAFADRRGLSGEIRSAEPPSPAAERGQGDKPKRGMFDGLKLSAAPPPEKAAERGQDRDYRRAVERASRSAETVLQARASGGPVLEHQKVALERATEALDQIRAGASRDMASAFQRDPGLLHEAAAGRSRPMIDAMAHEAKVRADPAMRADRFVERWQGLRHQRGAAERAGDHAGAEKAGGAMRGMAKGLERDPQVESLLKGRRQELGLQMEMGRARTIGAELVQQLEISRDRGMSR
SIO_010081: H5V43_RS23370
subclass of: SO_0000673
so part of: H5V43_RS23370
location: 5813..8731
location: region:5813-8731:1
so has part: feature:5813-8731:1:exon

WP_025550893.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5813-8731:1:exon

H5V43_RS23375
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
locus tag: H5V43_RS23375
old locus tag: H5V43_23375
so part of: sequence
location: 8793..9035
location: region:8793-9035:1
so has part: feature:8793-9035:1:exon
subclass of: SO_0000010

position:8793:1
position: 8793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9035:1
position: 9035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8793-9035:1:exon

H5V43_RS23375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
locus tag: H5V43_RS23375
old locus tag: H5V43_23375
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020820064.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix domain-containing protein
translation: MTDTTRWTVSVSRNTDIAVRSFLAQRGMKKGDLSRFIEEAVKWRVLDQTVAEARGKFDDMDPEELDALIDEAVTAARQPA
SIO_010081: H5V43_RS23375
subclass of: SO_0000673
so part of: H5V43_RS23375
location: 8793..9035
location: region:8793-9035:1
so has part: feature:8793-9035:1:exon

WP_025550895.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8793-9035:1:exon

H5V43_RS23380
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
locus tag: H5V43_RS23380
old locus tag: H5V43_23380
so part of: sequence
location: 9040..9474
location: region:9040-9474:1
so has part: feature:9040-9474:1:exon
subclass of: SO_0000010

position:9040:1
position: 9040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9474:1
position: 9474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9040-9474:1:exon

H5V43_RS23380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
locus tag: H5V43_RS23380
old locus tag: H5V43_23380
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020820063.1
GO function: GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: putative toxin-antitoxin system toxin component, PIN family
translation: MRVVVDTNILISALLSARSLPAELIELWREGRFGLLTSAEQLDELMRVTRYPKIRERLSPALAGQLINELRDVAVLVSDLPHVTACADPYDNYLLAMIEAGRADCLVTGDKRDLLGMVRYEGGRIVTVRTFLTAYGRLPGDERP
SIO_010081: H5V43_RS23380
subclass of: SO_0000673
so part of: H5V43_RS23380
location: 9040..9474
location: region:9040-9474:1
so has part: feature:9040-9474:1:exon

WP_025550897.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9040-9474:1:exon

H5V43_RS23385
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
locus tag: H5V43_RS23385
old locus tag: H5V43_23385
so part of: sequence
location: 9471..10184
location: region:9471-10184:1
so has part: feature:9471-10184:1:exon
subclass of: SO_0000010

position:9471:1
position: 9471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10184:1
position: 10184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9471-10184:1:exon

H5V43_RS23385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
locus tag: H5V43_RS23385
old locus tag: H5V43_23385
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015460630.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6118 family protein
translation: MTDDNDYRDEPQDDPAAAFERLRGEVSLLRSAIEGLTAARESIDIPDYEPTLARTEKVLTVLAEQFGLMRQSPAMTLTPENMGARLNAAVAESVNTLRSHAQASKSALDGTVNELRAIVRSARHADDQDRRVYLFGGGGLVLGLLLYAVMAGPIARLAPASWQWPEKVATRVLAERTPWDAGQHLMQTAAPESWGVIVAAAPLADGNREAIDGCREQAAEARKAVRCTIDVKADDKP
SIO_010081: H5V43_RS23385
subclass of: SO_0000673
so part of: H5V43_RS23385
location: 9471..10184
location: region:9471-10184:1
so has part: feature:9471-10184:1:exon

WP_025550899.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9471-10184:1:exon

H5V43_RS23390
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
locus tag: H5V43_RS23390
old locus tag: H5V43_23390
so part of: sequence
location: 10269..10529
location: region:10269-10529:1
so has part: feature:10269-10529:1:exon
subclass of: SO_0000010

position:10269:1
position: 10269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10529:1
position: 10529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10269-10529:1:exon

H5V43_RS23390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
locus tag: H5V43_RS23390
old locus tag: H5V43_23390
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017501672.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: WGR domain-containing protein
translation: MNGADLPLPVELVALDPARNIRRRYAIVASVDLFGMIVVETRWGRIGAAGQVQRHAFADQAAAERHIAATLRRRGTAETRIGVAYL
SIO_010081: H5V43_RS23390
subclass of: SO_0000673
so part of: H5V43_RS23390
location: 10269..10529
location: region:10269-10529:1
so has part: feature:10269-10529:1:exon

WP_037483644.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10269-10529:1:exon

H5V43_RS23395
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
locus tag: H5V43_RS23395
old locus tag: H5V43_23395
so part of: sequence
location: complement(10707..10985)
location: region:10707-10985:-1
so has part: feature:10707-10985:-1:exon
subclass of: SO_0000010

position:10707:-1
position: 10707
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10985:-1
position: 10985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10707-10985:-1:exon

H5V43_RS23395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
locus tag: H5V43_RS23395
old locus tag: H5V43_23395
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019820678.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BrnA antitoxin family protein
translation: MKPKYDPAIHGDPPPLTDEMLGKMRSASEVHGTDWVDHAMGRKRGRPKLAAPKVEVKIRLDAATVEHLRHSGPGWQTRVNALLGKLVAAGQI
SIO_010081: H5V43_RS23395
subclass of: SO_0000673
so part of: H5V43_RS23395
location: complement(10707..10985)
location: region:10707-10985:-1
so has part: feature:10707-10985:-1:exon

WP_025550901.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10707-10985:-1:exon

H5V43_RS23400
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
locus tag: H5V43_RS23400
old locus tag: H5V43_23400
so part of: sequence
location: complement(10975..11244)
location: region:10975-11244:-1
so has part: feature:10975-11244:-1:exon
subclass of: SO_0000010

position:10975:-1
position: 10975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11244:-1
position: 11244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10975-11244:-1:exon

H5V43_RS23400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
locus tag: H5V43_RS23400
old locus tag: H5V43_23400
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020200425.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BrnT family toxin
translation: MEVESDPAKDATNIAKHGVSLQAAERFDWDTALVVEDDRFDYGEMRFYAVGYIGDRLHTLIYADGSHEDAVRAISLWPSTRAEVKRYEA
SIO_010081: H5V43_RS23400
subclass of: SO_0000673
so part of: H5V43_RS23400
location: complement(10975..11244)
location: region:10975-11244:-1
so has part: feature:10975-11244:-1:exon

WP_025550902.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10975-11244:-1:exon

H5V43_RS23405
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
locus tag: H5V43_RS23405
old locus tag: H5V43_23405
so part of: sequence
location: 11477..11593
location: region:11477-11593:1
so has part: feature:11477-11593:1:exon
subclass of: SO_0000010

position:11477:1
position: 11477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11593:1
position: 11593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11477-11593:1:exon

H5V43_RS23405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
locus tag: H5V43_RS23405
old locus tag: H5V43_23405
inference: COORDINATES: protein motif:HMM:NF025742.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BrnA antitoxin family protein
translation: MRVGYARVSTVDHLRHSGPGWQTRVNALLGKLVAAGQI
SIO_010081: H5V43_RS23405
subclass of: SO_0000673
so part of: H5V43_RS23405
location: 11477..11593
location: region:11477-11593:1
so has part: feature:11477-11593:1:exon

WP_157846877.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11477-11593:1:exon

H5V43_RS23410
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
locus tag: H5V43_RS23410
old locus tag: H5V43_23410
pseudo: true
so part of: sequence
location: complement(11845..12404)
location: region:11845-12404:-1
so has part: feature:11845-12404:-1:exon
subclass of: SO_0000010

position:11845:-1
position: 11845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12404:-1
position: 12404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11845-12404:-1:exon

H5V43_RS23410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
locus tag: H5V43_RS23410
old locus tag: H5V43_23410
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004213255.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: H5V43_RS23410
subclass of: SO_0000673
so part of: H5V43_RS23410
location: complement(11845..12404)
location: region:11845-12404:-1
so has part: feature:11845-12404:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11845-12404:-1:exon

H5V43_RS23415
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
locus tag: H5V43_RS23415
old locus tag: H5V43_23415
so part of: sequence
location: 12577..15546
location: region:12577-15546:1
so has part: feature:12577-15546:1:exon
subclass of: SO_0000010

position:12577:1
position: 12577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15546:1
position: 15546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12577-15546:1:exon

H5V43_RS23415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
locus tag: H5V43_RS23415
old locus tag: H5V43_23415
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015449233.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MARRRLLTGEERRRLFDAPHDETAIVSHYTLAVEDLDLIGRRHRSPNRLGLAVQIALMRHPGFGLQPAIGVPDAILHYLAAQIFVEAEVFADYSQRPQTRNDHADIAARHLGLRPFRRGDIPLALDLAAEAADRTDRGEPIVRALMEGLKRERFILPSADTLERAGLAGRARARKAAAATIVASLSHAELARIDDLIANSSDFGMTPLAWLRNFEEAPTTANINGLLERLRYVREIGIDPAIGARIPDFRLAQFMREGGAAPAFLLSDYSLGRRRATLVAAVIDLEVRLADAAIQMFDRLVGSLFTRARRGRERRYQDSIRSVGELMRLFGATIAALGEAVEHGGNPLELIDEAVGWHRLVAAKAQVDALADLAGEDALVAATGRYATLRRFSPAFLDAFTFKATGSGSQLVKAIDIIRDANARKTRSLPDDVPLPFANRQWKHLITEGGQVDRRRYETAVMATLRDRLRAGDIWVEGTRNYRRFYAYLLSRREASKMADSLPFQTDAAAYLEERARTLDWRLRRFAKQLKANRLVGVAIERDRLKLQPMQAITPPEAEALDRRLDALLPRVRITELLVEVAERTGFLSAFRDLRSGKEHDNPHAILAAILADGSNLGLERMANASDGVSYAQLAWTHNWYLSPDNYQAALAMIVAAHHDLSFTRHWGAGTSSSSDGQFFRTGRSRSAAADINAKYGGEPGLKIYSHLSDHFASFGSRIMSATAGEAPYVLDGLMLGAGALPLHEHYTDTGGATDHVFALCHLLGFRFVPRLRDIADRKLGSIAVPSTYKGIESLMGRTIKTAAIEADWDDIVRIVASIKEGAVAPSAILRKLAAYKRQNRLDFALAELGRIERTLFTIDWLEQPDLRRACQAGLNKGEARHTLAAAIYTNRQGRFTDRSIENQEYRASGLNLLIAAIAYWNTIYLDRAAQHLTTSGVLFDDALLAHLSPMGWAHISLTGDYLWQRAKPLAPGEFRALNDPMARLKRVA
SIO_010081: H5V43_RS23415
subclass of: SO_0000673
so part of: H5V43_RS23415
location: 12577..15546
location: region:12577-15546:1
so has part: feature:12577-15546:1:exon

WP_193666820.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12577-15546:1:exon

H5V43_RS23420
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
locus tag: H5V43_RS23420
old locus tag: H5V43_23420
pseudo: true
so part of: sequence
location: <15608..15784
location: region:15608-15784:1
so has part: feature:15608-15784:1:exon
subclass of: SO_0000010

position:15608:1
position: 15608
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:15784:1
position: 15784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15608-15784:1:exon

H5V43_RS23420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
locus tag: H5V43_RS23420
old locus tag: H5V43_23420
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017501690.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
SIO_010081: H5V43_RS23420
subclass of: SO_0000673
so part of: H5V43_RS23420
location: <15608..15784
location: region:15608-15784:1
so has part: feature:15608-15784:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15608-15784:1:exon

H5V43_RS23425
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
locus tag: H5V43_RS23425
old locus tag: H5V43_23425
so part of: sequence
location: complement(15823..16365)
location: region:15823-16365:-1
so has part: feature:15823-16365:-1:exon
subclass of: SO_0000010

position:15823:-1
position: 15823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16365:-1
position: 16365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15823-16365:-1:exon

H5V43_RS23425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
locus tag: H5V43_RS23425
old locus tag: H5V43_23425
inference: COORDINATES: protein motif:HMM:NF025054.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MPTVDYRTATAEDASAIGALHVTSWHETYAGLLPQEMLDGLSVESRTAMWTTVLHATASLNGTRVYVAERADEIVGFGACGGQRDDGMRERGFIGEIGAIYILRSQQGAGVGRSLMGLMARDLVARPMPSASLWVLRENERARRFYEGLGGTVIAEKEVTEGDTILREVAYGWLDLSHLV
SIO_010081: H5V43_RS23425
subclass of: SO_0000673
so part of: H5V43_RS23425
location: complement(15823..16365)
location: region:15823-16365:-1
so has part: feature:15823-16365:-1:exon

WP_193666906.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15823-16365:-1:exon

H5V43_RS23430
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
gene: parA
locus tag: H5V43_RS23430
old locus tag: H5V43_23430
so part of: sequence
location: 16482..17135
location: region:16482-17135:1
so has part: feature:16482-17135:1:exon
subclass of: SO_0000010

position:16482:1
position: 16482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17135:1
position: 17135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16482-17135:1:exon

H5V43_RS23430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
gene: parA
locus tag: H5V43_RS23430
old locus tag: H5V43_23430
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012554518.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family partition ATPase
translation: MPTIAIISQKGGAGKTTLALHLAAAAEDSGHTALLIDLDPQATASQWAAWRQDAPPVVIDSAPPRLTAKIEQATGQGAEFIVIDTPPHADSAASAAVEAADLVLIPCRPSAFDLAAIKTTASLVKMRGKPAFVIFTAGSPTAPRMYDEAAQLVQDYGLEACPHRISDRAAFRHAAAEGKTAMEIEPNGKAADEVQQLYKWTCQHVNMQASKKRRAKA
SIO_010081: H5V43_RS23430
subclass of: SO_0000673
so part of: H5V43_RS23430
location: 16482..17135
location: region:16482-17135:1
so has part: feature:16482-17135:1:exon

WP_193666907.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16482-17135:1:exon

H5V43_RS23435
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
locus tag: H5V43_RS23435
old locus tag: H5V43_23435
so part of: sequence
location: 17132..17422
location: region:17132-17422:1
so has part: feature:17132-17422:1:exon
subclass of: SO_0000010

position:17132:1
position: 17132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17422:1
position: 17422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17132-17422:1:exon

H5V43_RS23435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
locus tag: H5V43_RS23435
old locus tag: H5V43_23435
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013041578.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRKGSLLALRDREPASSPAPVEPEGQSRAPVASGAGSSPVAPSRQGKKAMTGYFSPEMSFAMHMTARKHGKSLQDAMAEAFNDWLRKMGESPVGK
SIO_010081: H5V43_RS23435
subclass of: SO_0000673
so part of: H5V43_RS23435
location: 17132..17422
location: region:17132-17422:1
so has part: feature:17132-17422:1:exon

WP_193666908.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17132-17422:1:exon

H5V43_RS23440
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
locus tag: H5V43_RS23440
old locus tag: H5V43_23440
so part of: sequence
location: 17563..17844
location: region:17563-17844:1
so has part: feature:17563-17844:1:exon
subclass of: SO_0000010

position:17563:1
position: 17563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17844:1
position: 17844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17563-17844:1:exon

H5V43_RS23440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
locus tag: H5V43_RS23440
old locus tag: H5V43_23440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013077861.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVSTSNDGIMTEYLVKYGALKASRQNRPTDLLETLYITERYRAGDDLKSARAGYDHSVWNGVSASDVDRRLADLDSFMTKLARDRAAIWGITH
SIO_010081: H5V43_RS23440
subclass of: SO_0000673
so part of: H5V43_RS23440
location: 17563..17844
location: region:17563-17844:1
so has part: feature:17563-17844:1:exon

WP_193666909.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17563-17844:1:exon

H5V43_RS23445
type: Gene
subclass of: SO_0000704
RO_0002162: 336203
locus tag: H5V43_RS23445
old locus tag: H5V43_23445
so part of: sequence
location: complement(17964..19064)
location: region:17964-19064:-1
so has part: feature:17964-19064:-1:exon
subclass of: SO_0000010

position:17964:-1
position: 17964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19064:-1
position: 19064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17964-19064:-1:exon

H5V43_RS23445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 336203
locus tag: H5V43_RS23445
old locus tag: H5V43_23445
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008832586.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MTIEPSPSLFDVMPAGAAEGDDRTPLLPVRHPNQDLFICDVLDAIPKDDMASMEHPVFSLSTKPDNRMRRYEHNGSVIEIIPSGKGLATIHDKDILIYCISQLVAKMNQGGTPSRTVRLQAYDMLVATNRQTSGEGYRLMADALTRLRGTTVRTNIQTGGVEETRIFGLIEEAKITRKTFDGRMLDLEITLSDWVYRSVISKNVLTLHRDYFRLRKPFERRMYELARKHCGMKDEWKIGLELLQKKCGSNSPLRVFRALVKKVCEHDADHGHFPDYAVAIEDDVVLFRNRSGLKAKPDPVAVGRDAPFIDPETMHDAKTAAPGYDIYALYDEWVSWWHDMGKPELKSPAGAFLGFCKKRHERKPMR
SIO_010081: H5V43_RS23445
subclass of: SO_0000673
so part of: H5V43_RS23445
location: complement(17964..19064)
location: region:17964-19064:-1
so has part: feature:17964-19064:-1:exon

WP_193666910.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17964-19064:-1:exon