Sphingobium fuliginis strain KK22 plasmid p1, al1l pseudoknot.
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.
Complete Genome Sequence of Sphingobium barthaii KK22, a High-Molecular-Weight Polycyclic Aromatic Hydrocarbon-Degrading Soil Bacterium
Microbiol Resour Announc 10 (1), e01250-20 (2021)
Submitted (06-AUG-2020) Graduate School of Nanobiosciences, Yokohama City University, 22-2 Seto, Kanazawa-ku, Yokohama 236-0027, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nCP060037.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/24/2023 08:54:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,715\nCDSs (total) :: 4,649\nGenes (coding) :: 4,581\nCDSs (with protein) :: 4,581\nGenes (RNA) :: 66\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 3\nPseudo Genes (total) :: 68\nCDSs (without protein) :: 68\nPseudo Genes (ambiguous residues) :: 0 of 68\nPseudo Genes (frameshifted) :: 26 of 68\nPseudo Genes (incomplete) :: 53 of 68\nPseudo Genes (internal stop) :: 10 of 68\nPseudo Genes (multiple problems) :: 16 of 68\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007688084.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017183652.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_015449221.1
COORDINATES: similar to AA sequence:RefSeq:WP_017183654.1
COORDINATES: similar to AA sequence:RefSeq:WP_007686501.1
COORDINATES: similar to AA sequence:RefSeq:WP_020820505.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824046.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013041153.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019054566.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017672095.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011749831.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_007668740.1
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012975307.1
COORDINATES: similar to AA sequence:RefSeq:WP_013039114.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683896.1
COORDINATES: similar to AA sequence:RefSeq:WP_017502166.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129601.1
COORDINATES: similar to AA sequence:RefSeq:WP_012092589.1
COORDINATES: similar to AA sequence:RefSeq:WP_007600987.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF012376.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004212614.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011950545.1
GO:0008853 - exodeoxyribonuclease III activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011950546.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011950547.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950553.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611705.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013434.2
COORDINATES: protein motif:HMM:NF024910.2
COORDINATES: similar to AA sequence:RefSeq:WP_017181815.1
COORDINATES: protein motif:HMM:NF012264.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_053111705.1
COORDINATES: similar to AA sequence:RefSeq:WP_017181812.1
COORDINATES: similar to AA sequence:RefSeq:WP_017181811.1
COORDINATES: similar to AA sequence:RefSeq:WP_004751311.1
COORDINATES: similar to AA sequence:RefSeq:WP_018927864.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449233.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213255.1
COORDINATES: similar to AA sequence:RefSeq:WP_017181808.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_053111711.1
COORDINATES: protein motif:HMM:NF017532.2
phytanoyl-CoA dioxygenase family protein
COORDINATES: protein motif:HMM:NF024092.2
nuclear transport factor 2 family protein
COORDINATES: protein motif:HMM:NF024242.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_053111714.1
COORDINATES: similar to AA sequence:RefSeq:WP_053111696.1
COORDINATES: similar to AA sequence:RefSeq:WP_053111695.1
COORDINATES: similar to AA sequence:RefSeq:WP_053111694.1
COORDINATES: similar to AA sequence:RefSeq:WP_053111713.1
6-hydroxy-3-succinoylpyridine 3-monooxygenase NdpD
COORDINATES: similar to AA sequence:RefSeq:WP_017183767.1
COORDINATES: similar to AA sequence:RefSeq:WP_009823637.1
COORDINATES: protein motif:HMM:NF033517.1
COORDINATES: similar to AA sequence:RefSeq:WP_000950098.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase.; TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_053111699.1
COORDINATES: similar to AA sequence:RefSeq:WP_007436118.1
COORDINATES: protein motif:HMM:NF024600.2
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: protein motif:HMM:NF017206.2
COORDINATES: similar to AA sequence:RefSeq:WP_010666245.1
COORDINATES: similar to AA sequence:RefSeq:WP_020226786.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
TetR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014072622.1
COORDINATES: similar to AA sequence:RefSeq:WP_017183759.1
COORDINATES: similar to AA sequence:RefSeq:WP_020817929.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649063.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF012893.2
COORDINATES: similar to AA sequence:RefSeq:WP_006963511.1
GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015460544.1
COORDINATES: similar to AA sequence:RefSeq:WP_010126883.1
COORDINATES: similar to AA sequence:RefSeq:WP_013831356.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019054804.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020186217.1
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: protein motif:HMM:NF012870.2
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008873507.1
COORDINATES: protein motif:HMM:NF018259.2
COORDINATES: similar to AA sequence:RefSeq:WP_013847346.1
COORDINATES: similar to AA sequence:RefSeq:WP_008833390.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_018245370.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012455868.1
GO:0008832 - dGTPase activity [Evidence IEA]
GO:0006203 - dGTP catabolic process [Evidence IEA]
anti-phage deoxyguanosine triphosphatase
COORDINATES: protein motif:HMM:NF039244.1
COORDINATES: similar to AA sequence:RefSeq:WP_007688040.1
COORDINATES: protein motif:HMM:NF037081.2
COORDINATES: similar to AA sequence:RefSeq:WP_019054787.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950430.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006952693.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010339735.1
COORDINATES: similar to AA sequence:RefSeq:WP_015460600.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339733.1
COORDINATES: similar to AA sequence:RefSeq:WP_015460596.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339725.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950450.1
COORDINATES: similar to AA sequence:RefSeq:WP_006560766.1
COORDINATES: similar to AA sequence:RefSeq:WP_010408958.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_018096497.1
COORDINATES: similar to AA sequence:RefSeq:WP_015822474.1
COORDINATES: protein motif:HMM:NF025642.2
COORDINATES: similar to AA sequence:RefSeq:WP_008833115.1
COORDINATES: similar to AA sequence:RefSeq:WP_020818778.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054422.1
COORDINATES: similar to AA sequence:RefSeq:WP_006952651.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017183263.1
COORDINATES: similar to AA sequence:RefSeq:WP_017183264.1
COORDINATES: similar to AA sequence:RefSeq:WP_020819416.1
COORDINATES: similar to AA sequence:RefSeq:WP_013040148.1
COORDINATES: similar to AA sequence:RefSeq:WP_013846909.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339711.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054428.1
COORDINATES: similar to AA sequence:RefSeq:WP_019054427.1
COORDINATES: similar to AA sequence:RefSeq:WP_013846912.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339708.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339707.1
COORDINATES: similar to AA sequence:RefSeq:WP_020819415.1
COORDINATES: similar to AA sequence:RefSeq:WP_018250454.1
COORDINATES: similar to AA sequence:RefSeq:WP_010405804.1
COORDINATES: similar to AA sequence:RefSeq:WP_010124620.1
COORDINATES: similar to AA sequence:RefSeq:WP_006953712.1
COORDINATES: similar to AA sequence:RefSeq:WP_010405809.1
COORDINATES: similar to AA sequence:RefSeq:WP_018250458.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020819396.1
COORDINATES: protein motif:HMM:NF012514.2
COORDINATES: similar to AA sequence:RefSeq:WP_007688471.1
COORDINATES: similar to AA sequence:RefSeq:WP_008831019.1
COORDINATES: similar to AA sequence:RefSeq:WP_007682384.1
COORDINATES: similar to AA sequence:RefSeq:WP_017181910.1
COORDINATES: similar to AA sequence:RefSeq:WP_007682381.1
COORDINATES: similar to AA sequence:RefSeq:WP_003596089.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611167.1
COORDINATES: similar to AA sequence:RefSeq:WP_009867760.1
COORDINATES: protein motif:HMM:NF033580.1
COORDINATES: similar to AA sequence:RefSeq:WP_017183612.1
COORDINATES: similar to AA sequence:RefSeq:WP_010337899.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832783.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832784.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013832785.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013832786.1
HpcH/HpaI aldolase/citrate lyase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013832787.1
GO:0018817 - 2-oxo-hept-3-ene-1,7-dioate hydratase activity [Evidence IEA]
2-oxo-hepta-3-ene-1,7-dioic acid hydratase
COORDINATES: similar to AA sequence:RefSeq:WP_013832788.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832789.1
COORDINATES: similar to AA sequence:RefSeq:WP_013834115.1
COORDINATES: similar to AA sequence:RefSeq:WP_013834114.1
COORDINATES: similar to AA sequence:RefSeq:WP_010891041.1
non-oxidative hydroxyarylic acid decarboxylases subunit D
COORDINATES: similar to AA sequence:RefSeq:WP_013832792.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]
non-oxidative hydroxyarylic acid decarboxylases subunit C
COORDINATES: similar to AA sequence:RefSeq:WP_008828117.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013832794.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832795.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832796.1
COORDINATES: similar to AA sequence:RefSeq:WP_007015965.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_007015966.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832799.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832800.1
2-hydroxychromene-2-carboxylate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_007015968.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013832802.1
aromatic-ring-hydroxylating dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_008828127.1
non-heme iron oxygenase ferredoxin subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013832804.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832805.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
GO:0044237 - cellular metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013832806.1
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013832807.1
4-hydroxythreonine-4-phosphate dehydrogenase PdxA
COORDINATES: similar to AA sequence:RefSeq:WP_013832808.1
COORDINATES: similar to AA sequence:RefSeq:WP_007015976.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832810.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007015978.1
COORDINATES: similar to AA sequence:RefSeq:WP_007015979.1
GO:0018577 - catechol 2,3-dioxygenase activity [Evidence IEA]
GO:0009712 - catechol-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007015980.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832814.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
2-hydroxymuconic semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_007015982.1
GO:0003824 - catalytic activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013832816.1
GO:0008774 - acetaldehyde dehydrogenase (acetylating) activity [Evidence IEA]
acetaldehyde dehydrogenase (acetylating)
COORDINATES: similar to AA sequence:RefSeq:WP_013832817.1
GO:0008701 - 4-hydroxy-2-oxovalerate aldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013832818.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832819.1
4-oxalocrotonate tautomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007015987.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013832820.1
COORDINATES: similar to AA sequence:RefSeq:WP_007015989.1
3-(cis-5,6-dihydroxycyclohexa-1, 3-dien-1-yl)propanoate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_007015990.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832823.1
2Fe-2S iron-sulfur cluster binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013832824.1
COORDINATES: similar to AA sequence:RefSeq:WP_008828561.1
GO:0019380 - 3-phenylpropionate catabolic process [Evidence IEA]
3-phenylpropionate/cinnamic acid dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_008828560.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_013834094.1
COORDINATES: similar to AA sequence:RefSeq:WP_013834093.1
COORDINATES: similar to AA sequence:RefSeq:WP_013834092.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008829811.1
COORDINATES: similar to AA sequence:RefSeq:WP_013834089.1
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_013832832.1
GO:0016829 - lyase activity [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007015995.1
COORDINATES: similar to AA sequence:RefSeq:WP_007015996.1
COORDINATES: protein motif:HMM:NF016777.2
COORDINATES: similar to AA sequence:RefSeq:WP_013834083.1
COORDINATES: similar to AA sequence:RefSeq:WP_013834082.1
COORDINATES: similar to AA sequence:RefSeq:WP_013834081.1
COORDINATES: similar to AA sequence:RefSeq:WP_013834080.1
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010339514.1
COORDINATES: similar to AA sequence:RefSeq:WP_017503621.1
COORDINATES: similar to AA sequence:RefSeq:WP_018273520.1
COORDINATES: similar to AA sequence:RefSeq:WP_009823639.1
COORDINATES: similar to AA sequence:RefSeq:WP_011159636.1
organic hydroperoxide resistance protein
COORDINATES: similar to AA sequence:RefSeq:WP_013848806.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018251279.1
COORDINATES: similar to AA sequence:RefSeq:WP_008830364.1
COORDINATES: protein motif:HMM:NF025008.2
COORDINATES: protein motif:HMM:TIGR00369.1
COORDINATES: protein motif:HMM:NF014523.2
COORDINATES: similar to AA sequence:RefSeq:WP_018251274.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824041.1
COORDINATES: protein motif:HMM:NF025013.2
COORDINATES: similar to AA sequence:RefSeq:WP_012553437.1
COORDINATES: similar to AA sequence:RefSeq:WP_009106264.1
COORDINATES: similar to AA sequence:RefSeq:WP_007016019.1
COORDINATES: similar to AA sequence:RefSeq:WP_013834075.1
COORDINATES: similar to AA sequence:RefSeq:WP_013834074.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007016015.1
GO:0009027 - tartrate dehydrogenase activity [Evidence IEA]
GO:0046395 - carboxylic acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013834072.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832849.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890877.1
GO:0050242 - pyruvate, phosphate dikinase activity [Evidence IEA]
GO:0015976 - carbon utilization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008827667.1
COORDINATES: similar to AA sequence:RefSeq:WP_013834068.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832845.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832844.1
COORDINATES: similar to AA sequence:RefSeq:WP_013832843.1
COORDINATES: similar to AA sequence:RefSeq:WP_011608154.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011540744.1
COORDINATES: protein motif:HMM:NF024491.2
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017501291.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683342.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212677.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
copper resistance system multicopper oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_009823975.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683345.1
COORDINATES: similar to AA sequence:RefSeq:WP_017501296.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212689.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_004212690.1
type II toxin-antitoxin system YafQ family toxin
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_043766072.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212696.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212697.1
COORDINATES: similar to AA sequence:RefSeq:WP_008121551.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212701.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683808.1
COORDINATES: similar to AA sequence:RefSeq:WP_020818174.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0008941 - nitric oxide dioxygenase activity [Evidence IEA]; GO:0019825 - oxygen binding [Evidence IEA]
GO:0051409 - response to nitrosative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015449321.1
COORDINATES: protein motif:HMM:NF015669.2
COORDINATES: similar to AA sequence:RefSeq:WP_004212708.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
cytochrome-c oxidase, cbb3-type subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_004212709.1
cytochrome-c oxidase, cbb3-type subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_018009698.1
cbb3-type cytochrome c oxidase subunit 3
COORDINATES: similar to AA sequence:RefSeq:WP_004212713.1
cytochrome-c oxidase, cbb3-type subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_008839047.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212715.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449327.1
COORDINATES: similar to AA sequence:RefSeq:WP_009802060.1
GO:0008535 - respiratory chain complex IV assembly [Evidence IEA]
cbb3-type cytochrome oxidase assembly protein CcoS
COORDINATES: similar to AA sequence:RefSeq:WP_076611774.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003497247.1
COORDINATES: protein motif:HMM:NF015863.2
PepSY-associated TM helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016743854.1
COORDINATES: similar to AA sequence:RefSeq:WP_017501299.1
COORDINATES: similar to AA sequence:RefSeq:WP_017270994.1
GO:0015087 - cobalt ion transmembrane transporter activity [Evidence IEA]; GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO:0006824 - cobalt ion transport [Evidence IEA]; GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013039094.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020820519.1
COORDINATES: similar to AA sequence:RefSeq:WP_007406406.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683361.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683363.1
GO:0005507 - copper ion binding [Evidence IEA]
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015449251.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683367.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449249.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683370.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212741.1
GO:0042597 - periplasmic space [Evidence IEA]
copper homeostasis periplasmic binding protein CopC
COORDINATES: similar to AA sequence:RefSeq:WP_007406374.1
copper homeostasis membrane protein CopD
COORDINATES: similar to AA sequence:RefSeq:WP_010336582.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212743.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004212744.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Cu(I)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007406387.1
COORDINATES: similar to AA sequence:RefSeq:WP_017501312.1
bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_007406370.1
GO:0008776 - acetate kinase activity [Evidence IEA]
GO:0006083 - acetate metabolic process [Evidence IEA]; GO:0006113 - fermentation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020820365.1
GO:0004318 - enoyl-[acyl-carrier-protein] reductase (NADH) activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017501316.1
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010405651.1
COORDINATES: similar to AA sequence:RefSeq:WP_017501318.1
COORDINATES: similar to AA sequence:RefSeq:WP_010405654.1
COORDINATES: similar to AA sequence:RefSeq:WP_017501320.1
COORDINATES: similar to AA sequence:RefSeq:WP_010405656.1
COORDINATES: protein motif:HMM:NF012645.2
COORDINATES: similar to AA sequence:RefSeq:WP_017501323.1
GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017501324.1
COORDINATES: similar to AA sequence:RefSeq:WP_008261590.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0050151 - oleate hydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017503370.1
COORDINATES: similar to AA sequence:RefSeq:WP_013849922.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212750.1
COORDINATES: similar to AA sequence:RefSeq:WP_013039078.1
COORDINATES: similar to AA sequence:RefSeq:WP_013039077.1
COORDINATES: similar to AA sequence:RefSeq:WP_004212862.1
COORDINATES: protein motif:HMM:NF025819.2
COORDINATES: protein motif:HMM:NF013094.2
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018391635.1
COORDINATES: similar to AA sequence:RefSeq:WP_020818071.1
COORDINATES: protein motif:HMM:NF024765.2
COORDINATES: similar to AA sequence:RefSeq:WP_006960130.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_016744737.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014077333.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004212754.1
COORDINATES: similar to AA sequence:RefSeq:WP_013849920.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449333.1
autoinducer binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007683387.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015449335.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449336.1
COORDINATES: similar to AA sequence:RefSeq:WP_013039071.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013039070.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449339.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_014072616.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_013849915.1
COORDINATES: protein motif:HMM:NF033894.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950748.1
COORDINATES: similar to AA sequence:RefSeq:WP_013039065.1
COORDINATES: similar to AA sequence:RefSeq:WP_007684609.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_013849913.1
COORDINATES: similar to AA sequence:RefSeq:WP_007683413.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013039061.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016743835.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449349.1
COORDINATES: similar to AA sequence:RefSeq:WP_007684601.1
COORDINATES: similar to AA sequence:RefSeq:WP_017503349.1
COORDINATES: protein motif:HMM:NF016370.2
COORDINATES: similar to AA sequence:RefSeq:WP_016743829.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950815.1
COORDINATES: similar to AA sequence:RefSeq:WP_017182166.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950814.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017182164.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_020820480.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950777.1
COORDINATES: similar to AA sequence:RefSeq:WP_007688055.1
COORDINATES: similar to AA sequence:RefSeq:WP_013849899.1
COORDINATES: similar to AA sequence:RefSeq:WP_020820489.1
COORDINATES: similar to AA sequence:RefSeq:WP_013849896.1
COORDINATES: similar to AA sequence:RefSeq:WP_016744708.1
COORDINATES: similar to AA sequence:RefSeq:WP_013849894.1
COORDINATES: similar to AA sequence:RefSeq:WP_020820492.1
COORDINATES: similar to AA sequence:RefSeq:WP_020820493.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449370.1
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017183728.1
COORDINATES: similar to AA sequence:RefSeq:WP_007688077.1
COORDINATES: similar to AA sequence:RefSeq:WP_007688079.1
COORDINATES: similar to AA sequence:RefSeq:WP_013041753.1
COORDINATES: similar to AA sequence:RefSeq:WP_007688081.1
COORDINATES: similar to AA sequence:RefSeq:WP_009824075.1
COORDINATES: similar to AA sequence:RefSeq:WP_017183650.1