Gambusia affinis mitochondrion, complete genome.
type: Entry
definition: Gambusia affinis mitochondrion, complete genome.
sequence version: NC_004388.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_004388.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Gambusia affinis (western mosquitofish)
organism: Gambusia affinis
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Gambusia.
reference: 1
references: 12470944
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from AP004422.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16614
topology: circular
so has quality: SO_0000988
location: 1..16614
location: region:1-16614:1
RO_0002162: 33528

NC_004388
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences
author: Miya, M.
author: Takeshima, H.
author: Endo, H.
author: Ishiguro, N.B.
author: Inoue, J.G.
author: Mukai, T.
author: Satoh, T.P.
author: Yamaguchi, M.
author: Kawaguchi, A.
author: Mabuchi, K.
author: Shirai, S.M.
author: Nishida, M.
journal: Mol. Phylogenet. Evol.
volume: 26
issue: 1
pages: 121-138
year: 2003
pubmed: 12470944

12470944
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (18-NOV-2002) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Miya, M.
journal: Submitted (12-DEC-2001) Natural History Museum & Institute, Chiba, Department of Zoology; 955-2 Aoba-cho, Chuo-ku, Chiba, Chiba 260-8682, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16614:1
position: 16614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16614:1:source
so part of: sequence
organism: Gambusia affinis
organelle: mitochondrion
mol type: genomic DNA

33528
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 33528
product: tRNA-Phe
so part of: sequence
location: 1..69
location: region:1-69:1
so has part: feature:1-69:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-69:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 33528
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 70..1016
location: region:70-1016:1
so has part: feature:70-1016:1:region

position:70:1
position: 70
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1016:1
position: 1016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70-1016:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 33528
product: tRNA-Val
so part of: sequence
location: 1017..1088
location: region:1017-1088:1
so has part: feature:1017-1088:1:region

position:1017:1
position: 1017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1088:1
position: 1088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1017-1088:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 33528
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1089..2763
location: region:1089-2763:1
so has part: feature:1089-2763:1:region

position:1089:1
position: 1089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2763:1
position: 2763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1089-2763:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 33528
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 2764..2837
location: region:2764-2837:1
so has part: feature:2764-2837:1:region

position:2764:1
position: 2764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2837:1
position: 2837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2764-2837:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 33528
gene: ND1
so part of: sequence
location: 2838..3812
location: region:2838-3812:1
so has part: feature:2838-3812:1:exon
subclass of: SO_0000010

805456
type: Gene
SIO_000068: ncbigene

position:2838:1
position: 2838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3812:1
position: 3812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2838-3812:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33528
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MLPVLLNTIINPLMLFIFIMLAVALLTLLERKVLGYMQLRKGPNVVGPYGLLQPFADGVKLLTKEPIRPSTASPLLFLFTPILAFTLALTLWAPLPLPSPLADLNLGILFILALSSLTVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSTVLLAGGFTLQTFNTAQEQVWLIFPALPLATMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIILMNTLSASIFLGTPFNHSLPELTSLAIMVKTALLVAIFLWVRASYPRFRYDQLMHLTWKNFLPTTLALVIWHLSLPLAFSSFPPQI
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2838..3812
location: region:2838-3812:1
so has part: feature:2838-3812:1:exon

NP_739828.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2838-3812:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 33528
product: tRNA-Ile
so part of: sequence
location: 3819..3888
location: region:3819-3888:1
so has part: feature:3819-3888:1:region

position:3819:1
position: 3819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3888:1
position: 3888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3819-3888:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 33528
product: tRNA-Gln
so part of: sequence
location: complement(3888..3958)
location: region:3888-3958:-1
so has part: feature:3888-3958:-1:region

position:3888:-1
position: 3888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3958:-1
position: 3958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3888-3958:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 33528
product: tRNA-Met
so part of: sequence
location: 3958..4026
location: region:3958-4026:1
so has part: feature:3958-4026:1:region

position:3958:1
position: 3958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4026:1
position: 4026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3958-4026:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 33528
gene: ND2
so part of: sequence
location: 4027..5073
location: region:4027-5073:1
so has part: feature:4027-5073:1:exon
subclass of: SO_0000010

805450
type: Gene
SIO_000068: ncbigene

position:4027:1
position: 4027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5073:1
position: 5073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4027-5073:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33528
gene: ND2
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MTPLIYSTLIISLGIGTTLTFASTHWYLAWMGIEINTLAIIPLMTQSHSPRATEATTKYFFAQATASATLLFAATSNAFFTGSWDILQTNNPLTYTLMTLALAMKIGLAPLHSWMPEVMQGLTLLTGLILSTWQKLAPFCLIYQIQPHSPNLFMALGLLSIVAGGWGGFNQVQLRKILAYSSIAHLGWMVLILSFSPPLTLVAFSTYLMMTFSLFYSFMMTKTTHINSLSTSWAKIPTLTALTPLILLSLGGLPPLTGFLPKWMILQELTKQDLALVAVLAALFSLFSLYFYLRLSYAMTLTMPPNNPAGTLPWRLNPSHNTLPPALTTTMTIFLLPITPAFMTLFFL
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4027..5073
location: region:4027-5073:1
so has part: feature:4027-5073:1:exon

NP_739829.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4027-5073:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 33528
product: tRNA-Trp
so part of: sequence
location: 5072..5143
location: region:5072-5143:1
so has part: feature:5072-5143:1:region

position:5072:1
position: 5072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5143:1
position: 5143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5072-5143:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 33528
product: tRNA-Ala
so part of: sequence
location: complement(5147..5215)
location: region:5147-5215:-1
so has part: feature:5147-5215:-1:region

position:5147:-1
position: 5147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5215:-1
position: 5215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5147-5215:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 33528
product: tRNA-Asn
so part of: sequence
location: complement(5216..5288)
location: region:5216-5288:-1
so has part: feature:5216-5288:-1:region

position:5216:-1
position: 5216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5288:-1
position: 5288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5216-5288:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 33528
product: tRNA-Cys
so part of: sequence
location: complement(5326..5389)
location: region:5326-5389:-1
so has part: feature:5326-5389:-1:region

position:5326:-1
position: 5326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5389:-1
position: 5389
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5326-5389:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 33528
product: tRNA-Tyr
so part of: sequence
location: complement(5391..5460)
location: region:5391-5460:-1
so has part: feature:5391-5460:-1:region

position:5391:-1
position: 5391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5460:-1
position: 5460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5391-5460:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 33528
gene: COX1
so part of: sequence
location: 5462..7018
location: region:5462-7018:1
so has part: feature:5462-7018:1:exon
subclass of: SO_0000010

805447
type: Gene
SIO_000068: ncbigene

position:5462:1
position: 5462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7018:1
position: 7018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5462-7018:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33528
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MATTRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELSQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGPSVDLTIFSLHLAGISSILGAINFITTIINMKPPAASQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVAYYAGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGALKWDTPLLWALGFIFLFTVGGLTGIILANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIFAGFVHWFPLFSGYTLHSTWTKIHFGIMFVGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTVSSIGSLISLTAVVLFLFILWEAFTAKREVLSTHLITTNVEWLHGCPPPYHTFEEPAFVQLQQTSK
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5462..7018
location: region:5462-7018:1
so has part: feature:5462-7018:1:exon

NP_739830.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5462-7018:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 33528
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: complement(7024..7094)
location: region:7024-7094:-1
so has part: feature:7024-7094:-1:region

position:7024:-1
position: 7024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7094:-1
position: 7094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7024-7094:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 33528
product: tRNA-Asp
so part of: sequence
location: 7097..7168
location: region:7097-7168:1
so has part: feature:7097-7168:1:region

position:7097:1
position: 7097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7168:1
position: 7168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7097-7168:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 33528
gene: COX2
so part of: sequence
location: 7178..7868
location: region:7178-7868:1
so has part: feature:7178-7868:1:exon
subclass of: SO_0000010

805448
type: Gene
SIO_000068: ncbigene

position:7178:1
position: 7178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7868:1
position: 7868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7178-7868:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33528
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7868,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPSQLGFQDAASPVMEELLHFHDHALMIVFLISAQVLYIIVALITTKLTDKFILDSQEIEIVWTLLPAMILILIALPSLRILYLMDEINDPHLTIKAMGHQWYWSYEYTDYEDLNFDSYMVPTQELTPGQFRLLETDHRMVVPLESPIRVLISADDVLHSWAVPSLGIKMDAVPGRLNQTAFIISRPGVFYGQCSEICGANHSFMPIVVEAVPLEHFENWSSTMLQDA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7178..7868
location: region:7178-7868:1
so has part: feature:7178-7868:1:exon

NP_739831.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7178-7868:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 33528
product: tRNA-Lys
so part of: sequence
location: 7869..7941
location: region:7869-7941:1
so has part: feature:7869-7941:1:region

position:7869:1
position: 7869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7941:1
position: 7941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7869-7941:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 33528
gene: ATP8
so part of: sequence
location: 7943..8110
location: region:7943-8110:1
so has part: feature:7943-8110:1:exon
subclass of: SO_0000010

805453
type: Gene
SIO_000068: ncbigene

position:7943:1
position: 7943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8110:1
position: 8110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7943-8110:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33528
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLTPTPWLAYLLFSWLIFSVIVLPKVSTHTFMESPAPLTKQKPDTEPWNWPWH
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7943..8110
location: region:7943-8110:1
so has part: feature:7943-8110:1:exon

NP_739832.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7943-8110:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 33528
gene: ATP6
so part of: sequence
location: 8101..8783
location: region:8101-8783:1
so has part: feature:8101-8783:1:exon
subclass of: SO_0000010

805454
type: Gene
SIO_000068: ncbigene

position:8101:1
position: 8101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8783:1
position: 8783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8101-8783:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33528
gene: ATP6
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:8782..8783,aa:TERM)
transl table: 2
product: ATP synthase F0 subunit 6
translation: MTLSLFDQFLSPALMGVPLAAAALALPWALFPRPTLRWVNNRLLTLQNWFFGQFAQQIFLPINIAGHKWAVLLTSLMLFLITLNTAGLLPYTFTPTTQLSMNMGFAVPLWLATVILGMRTQPTHSLGHLLPEGTPTLLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQLVSTATSVLLMTMPVLAVLTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8101..8783
location: region:8101-8783:1
so has part: feature:8101-8783:1:exon

NP_739833.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8101-8783:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 33528
gene: COX3
so part of: sequence
location: 8784..9568
location: region:8784-9568:1
so has part: feature:8784-9568:1:exon
subclass of: SO_0000010

805446
type: Gene
SIO_000068: ncbigene

position:8784:1
position: 8784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9568:1
position: 9568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8784-9568:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33528
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9567..9568,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHAYHMVDPSPWPLTGAVAALLMTSGLAIWMHFHSTTLMTLGLILLLLTMYQWWRDIVREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPAGINTLNPFEVPLLNTAVLLASGVTVTWAHHSIMEGQRKQALQSLTLTILLGFYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAICLLRQALHHFTSNHHFGFEAAAWYWHFVDVVWLFLYISIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8784..9568
location: region:8784-9568:1
so has part: feature:8784-9568:1:exon

NP_739834.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8784-9568:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 33528
product: tRNA-Gly
so part of: sequence
location: 9569..9639
location: region:9569-9639:1
so has part: feature:9569-9639:1:region

position:9569:1
position: 9569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9639:1
position: 9639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9569-9639:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 33528
gene: ND3
so part of: sequence
location: 9640..9988
location: region:9640-9988:1
so has part: feature:9640-9988:1:exon
subclass of: SO_0000010

805455
type: Gene
SIO_000068: ncbigene

position:9640:1
position: 9640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9988:1
position: 9988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9640-9988:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33528
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9988,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLVMTTLILSLLLSLLLAIVAFWLPLMMPDYEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWGDQLNNPHLTFTWATILLILLTLGLIYEWIQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9640..9988
location: region:9640-9988:1
so has part: feature:9640-9988:1:exon

NP_739835.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9640-9988:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 33528
product: tRNA-Arg
so part of: sequence
location: 9989..10058
location: region:9989-10058:1
so has part: feature:9989-10058:1:region

position:9989:1
position: 9989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10058:1
position: 10058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9989-10058:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 33528
gene: ND4L
so part of: sequence
location: 10059..10355
location: region:10059-10355:1
so has part: feature:10059-10355:1:exon
subclass of: SO_0000010

805452
type: Gene
SIO_000068: ncbigene

position:10059:1
position: 10059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10355:1
position: 10355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10059-10355:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33528
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MTPTHFAFSSAFMLGLAGLAFHRTHFLSALLCLEGLMLSLFIALSLWTLQFNTMNSASLPMILLAFSACEAGAGLALLVATTRTHSNSRLQSLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10059..10355
location: region:10059-10355:1
so has part: feature:10059-10355:1:exon

NP_739836.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10059-10355:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 33528
gene: ND4
so part of: sequence
location: 10349..11734
location: region:10349-11734:1
so has part: feature:10349-11734:1:exon
subclass of: SO_0000010

805445
type: Gene
SIO_000068: ncbigene

position:10349:1
position: 10349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11734:1
position: 11734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10349-11734:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33528
gene: ND4
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILLPSILLLPSTWLMPKKHLWSTTLSYSLMIAGTSLAWLAIPSENGWSFLNCFMASDPISTPLLVLTCWLLPLMILASQNHLMLEPTNRQRTFISLLISLQIFLILAFSATELILFYIMFEATLIPTLLIITRWGNQTERLNAGTYFLFYTLAGSLPLLIALLMMQNSTGTLSFLTLPYLSLIPAHDWAHKFWWTACLLAFLVKMPLYGAHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMIRILIIFAPSTKELSYPFIILALWGVVMTGSICLRQTDLKALIAYSSVSHMGLVAAAILIQTPWAFTGALVLMIAHGLTSSALFCLANTNYERSHSRTMLLVRGLQTLLPLTALWWFTATLANLALPPLPNLMGELMIITSLFNWSMWTLILTGLGMTITAGYSLYMFLTSQRGPLPSHLISWDPSHSREHLLLTMHLVPLLLLMLKPELLWGWNAC
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10349..11734
location: region:10349-11734:1
so has part: feature:10349-11734:1:exon

NP_739837.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10349-11734:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 33528
product: tRNA-His
so part of: sequence
location: 11831..11900
location: region:11831-11900:1
so has part: feature:11831-11900:1:region

position:11831:1
position: 11831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11900:1
position: 11900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11831-11900:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 33528
product: tRNA-Ser
codon recognized: AGY
so part of: sequence
location: 11901..11969
location: region:11901-11969:1
so has part: feature:11901-11969:1:region

position:11901:1
position: 11901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11969:1
position: 11969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11901-11969:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 33528
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: 11979..12051
location: region:11979-12051:1
so has part: feature:11979-12051:1:region

position:11979:1
position: 11979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12051:1
position: 12051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11979-12051:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 33528
gene: ND5
so part of: sequence
location: 12052..13884
location: region:12052-13884:1
so has part: feature:12052-13884:1:exon
subclass of: SO_0000010

805451
type: Gene
SIO_000068: ncbigene

position:12052:1
position: 12052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13884:1
position: 13884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12052-13884:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33528
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MPSTALLLPSCMMIIFLILLFPVLTTLSPTPLITGWALTKTKNAVKLAFFISLFPLFLFFDQGAETIITAWSWMNTLTFDINISFKFDTYSCIFIPVALYVTWSILEFASWYMHSDPKMNQFFKYLLVFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAVLYNRIGDVGLILTMVWTATRLNTWDLEQLFSLSNEHDLTLPLFGLILAAMGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRLNPLLENNKLALTTCLCLGALTTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFICSGSIIHSLNDEQDIRKMGGMHHLTPLTSSCFTIGSLALTGTPFLAGFFSKDAIIEALNTSYLNAWALTLTLIATSFTAVYSLRIIYFVLMEYPRFNPLMPINENNPSITNPLKRLAWGSIIAGFLITSNTLPLKTPLMTMPTPLKLTALAVTLLGLLTALEIAKLSSKQFKKTNNSPSHPFSIMLGFYPHVAHRSVPLTALVFGQAIATHLVDQTWLEKSGPKATFNLSLRPITMTSNIQQGMIKTYLSLFFFTSLLTLLFC
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 12052..13884
location: region:12052-13884:1
so has part: feature:12052-13884:1:exon

NP_739838.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12052-13884:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 33528
gene: ND6
so part of: sequence
location: complement(13881..14402)
location: region:13881-14402:-1
so has part: feature:13881-14402:-1:exon
subclass of: SO_0000010

805444
type: Gene
SIO_000068: ncbigene

position:13881:-1
position: 13881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14402:-1
position: 14402
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13881-14402:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33528
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MSYLMCVLLLGLVLGLVAVASNPSPYFAAMGLVVVAGVGCGVLVGTGGCFLSLVLFLIYLGGMLVVFAYSAAMAAEPFPEGWGSWPTLRLVGGYLVGVAVARGLLGKNWYEEDWSGFDSILGLTVLRGDVGGVSLMYSSGGWLLMGGGWVLLLTLFVVLELTRGLGRGALRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13881..14402)
location: region:13881-14402:-1
so has part: feature:13881-14402:-1:exon

NP_739839.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13881-14402:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 33528
product: tRNA-Glu
so part of: sequence
location: complement(14403..14471)
location: region:14403-14471:-1
so has part: feature:14403-14471:-1:region

position:14403:-1
position: 14403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14471:-1
position: 14471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14403-14471:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 33528
gene: CYTB
so part of: sequence
location: 14476..15615
location: region:14476-15615:1
so has part: feature:14476-15615:1:exon
subclass of: SO_0000010

805449
type: Gene
SIO_000068: ncbigene

position:14476:1
position: 14476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15615:1
position: 15615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14476-15615:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33528
gene: CYTB
codon start: 1
transl table: 2
product: cytochrome b
translation: MANLRKTHPLLKVANDALVDLPAPVNISAWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHIGRGLYYGSYLFKETWNTGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYMGDTLVQWIWGGFSVDNATLTRFFAFHFLFPFIVAAATMVHLIFLHETGSNNPIGLNSDADKISFHPYFSYKDLLGFVFLLTTLVTLSLFSPNLLGDPENFTPANPLITPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMVVPLLHTSKQRSLTFRPLTQILFWLLIADVAILTWIGGMPVEHPYIIIGQIASVLYFSLFLFFAPAAAWVENKILGW
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14476..15615
location: region:14476-15615:1
so has part: feature:14476-15615:1:exon

NP_739840.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14476-15615:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 33528
product: tRNA-Thr
so part of: sequence
location: 15616..15688
location: region:15616-15688:1
so has part: feature:15616-15688:1:region

position:15616:1
position: 15616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15688:1
position: 15688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15616-15688:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 33528
product: tRNA-Pro
so part of: sequence
location: complement(15688..15756)
location: region:15688-15756:-1
so has part: feature:15688-15756:-1:region

position:15688:-1
position: 15688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15756:-1
position: 15756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15688-15756:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 33528
note: control region
so part of: sequence
location: 15757..16614
location: region:15757-16614:1
so has part: feature:15757-16614:1:region

position:15757:1
position: 15757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15757-16614:1:region