Rhodococcus qingshengii strain CS98 plasmid RQCS_2.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Rhodococcus; Rhodococcus erythropolis group.
Complete Genome Sequence of the Cesium-Accumulating Bacterium Rhodococcus qingshengii CS98, Isolated from Soil in Japan
Submitted (21-MAY-2020) Contact:Katsuya Satoh National Institutes for Quantum and Radiological Science and Technology, Department of Radiation-Applied Biology Research, Takasaki Advanced Radiation Research Institute, Quantum Beam Science Research Directorate; 1233, Takasaki, Gunma 370-1292, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP023173.1.\nAnnotated at DFAST https://dfast.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.6\nGenome Coverage :: 245x\nSequencing Technology :: Nanopore GridION X5; Illumina Miseq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 05:12:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,251\nCDSs (total) :: 6,179\nGenes (coding) :: 6,124\nCDSs (with protein) :: 6,124\nGenes (RNA) :: 72\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 3\nPseudo Genes (total) :: 55\nCDSs (without protein) :: 55\nPseudo Genes (ambiguous residues) :: 0 of 55\nPseudo Genes (frameshifted) :: 30 of 55\nPseudo Genes (incomplete) :: 32 of 55\nPseudo Genes (internal stop) :: 9 of 55\nPseudo Genes (multiple problems) :: 13 of 55\n##Genome-Annotation-Data-END##
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007728184.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014985310.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019514337.1
COORDINATES: similar to AA sequence:RefSeq:WP_003894786.1
COORDINATES: protein motif:HMM:NF024770.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF013677.2
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011727847.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006935192.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
TetR/AcrR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003934679.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016944.2
GO:0004352 - glutamate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0019551 - glutamate catabolic process to 2-oxoglutarate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020171061.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017690.2
COORDINATES: similar to AA sequence:RefSeq:WP_017829153.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_012892492.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005516827.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005516829.1
COORDINATES: similar to AA sequence:RefSeq:WP_005516832.1
COORDINATES: protein motif:HMM:NF012596.2
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005570425.1
COORDINATES: similar to AA sequence:RefSeq:WP_024488023.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005264637.1
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]
Sec-independent protein translocase protein TatB
COORDINATES: similar to AA sequence:RefSeq:WP_005256277.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003944836.1
GO:0043953 - protein transport by the Tat complex [Evidence IEA]
Sec-independent protein translocase subunit TatA
COORDINATES: protein motif:HMM:NF019157.2
tannase/feruloyl esterase family alpha/beta hydrolase
COORDINATES: protein motif:HMM:TIGR03943.1
COORDINATES: similar to AA sequence:RefSeq:WP_015621953.1
COORDINATES: protein motif:HMM:NF019581.2
COORDINATES: protein motif:HMM:NF013539.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004945380.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017884010.1
glutamate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012949908.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_010629246.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: protein motif:HMM:NF024938.2
COORDINATES: similar to AA sequence:RefSeq:WP_020111474.1
crotonase/enoyl-CoA hydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019816058.1
GO:0070403 - NAD+ binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007726680.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005515197.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009677474.1
GO:0003858 - 3-hydroxybutyrate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007530033.1
COORDINATES: similar to AA sequence:RefSeq:WP_006943063.1
COORDINATES: protein motif:HMM:NF012870.2
DDE-type integrase/transposase/recombinase
COORDINATES: protein motif:HMM:NF024729.2
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: protein motif:HMM:NF014430.2
COORDINATES: protein motif:HMM:NF013698.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024673.2
COORDINATES: similar to AA sequence:RefSeq:WP_005050392.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017981527.1
COORDINATES: similar to AA sequence:RefSeq:WP_005246624.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014950.2
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: protein motif:HMM:NF012432.2
COORDINATES: similar to AA sequence:RefSeq:WP_020666143.1
GO:0015558 - secondary active p-aminobenzoyl-glutamate transmembrane transporter activity [Evidence IEA]
GO:1902604 - p-aminobenzoyl-glutamate transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010981551.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_032488867.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF020419.2
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019750086.1
COORDINATES: protein motif:HMM:NF023202.2
histone-like nucleoid-structuring protein Lsr2
COORDINATES: similar to AA sequence:RefSeq:WP_003943371.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: similar to AA sequence:RefSeq:WP_007026370.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019549478.1
COORDINATES: similar to AA sequence:RefSeq:WP_003898233.1
COORDINATES: similar to AA sequence:RefSeq:WP_018155187.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003898231.1
COORDINATES: protein motif:HMM:NF012312.2
COORDINATES: similar to AA sequence:RefSeq:WP_019171792.1
COORDINATES: similar to AA sequence:RefSeq:WP_007436190.1
GO:0016829 - lyase activity [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010595455.1
COORDINATES: similar to AA sequence:RefSeq:WP_007769632.1
COORDINATES: similar to AA sequence:RefSeq:WP_007769634.1
COORDINATES: similar to AA sequence:RefSeq:WP_005196966.1
COORDINATES: similar to AA sequence:RefSeq:WP_007926545.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019310993.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003931200.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013161.2
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013044.2
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_013161536.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007736075.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611981.1
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006896616.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012851605.1
COORDINATES: protein motif:HMM:NF019498.2
COORDINATES: protein motif:HMM:NF023431.2
COORDINATES: similar to AA sequence:RefSeq:WP_019050415.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020461191.1
GO:0016746 - acyltransferase activity [Evidence IEA]
GO:0006635 - fatty acid beta-oxidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016882377.1
COORDINATES: similar to AA sequence:RefSeq:WP_018382215.1
COORDINATES: similar to AA sequence:RefSeq:WP_010596622.1
COORDINATES: similar to AA sequence:RefSeq:WP_050768036.1
COORDINATES: similar to AA sequence:RefSeq:WP_003945955.1
COORDINATES: similar to AA sequence:RefSeq:WP_100160676.1
COORDINATES: protein motif:HMM:NF025878.2
COORDINATES: similar to AA sequence:RefSeq:WP_012691472.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0018506 - maleylacetate reductase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012691473.1
GO:0018576 - catechol 1,2-dioxygenase activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
GO:0009712 - catechol-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013350597.1
COORDINATES: protein motif:HMM:NF024771.2
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:NF019640.2
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF025050.2
COORDINATES: similar to AA sequence:RefSeq:WP_011445119.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010314643.1
mycofactocin-coupled SDR family oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_005190098.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006936759.1
COORDINATES: similar to AA sequence:RefSeq:WP_020517680.1
COORDINATES: similar to AA sequence:RefSeq:WP_006285040.1
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013585791.1
COORDINATES: similar to AA sequence:RefSeq:WP_005182747.1
GO:0051213 - dioxygenase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
class III extradiol ring-cleavage dioxygenase
COORDINATES: protein motif:HMM:NF036525.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006896617.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803079.1
COORDINATES: similar to AA sequence:RefSeq:WP_005252150.1
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: protein motif:HMM:NF024989.2
COORDINATES: protein motif:HMM:NF015925.2
GO:0004497 - monooxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013493072.1
COORDINATES: similar to AA sequence:RefSeq:WP_019665748.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019665747.1
transketolase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019665746.1
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_019665744.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_019665743.1
COORDINATES: similar to AA sequence:RefSeq:WP_019665742.1
COORDINATES: similar to AA sequence:RefSeq:WP_007733682.1
COORDINATES: similar to AA sequence:RefSeq:WP_003941261.1
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019749529.1
COORDINATES: similar to AA sequence:RefSeq:WP_007733684.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749527.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015289570.1
COORDINATES: similar to AA sequence:RefSeq:WP_007733687.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749524.1
COORDINATES: similar to AA sequence:RefSeq:WP_006933579.1
COORDINATES: similar to AA sequence:RefSeq:WP_007733691.1
COORDINATES: similar to AA sequence:RefSeq:WP_016881276.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749521.1
COORDINATES: similar to AA sequence:RefSeq:WP_019745643.1
COORDINATES: similar to AA sequence:RefSeq:WP_020553831.1
COORDINATES: similar to AA sequence:RefSeq:WP_019745640.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020553834.1
COORDINATES: similar to AA sequence:RefSeq:WP_020553835.1
Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26.; Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26; Derived by automated computational analysis using gene prediction method: Protein Homology.
gamma-glutamyl-gamma-aminobutyrate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019745637.1
COORDINATES: similar to AA sequence:RefSeq:WP_019745636.1
COORDINATES: similar to AA sequence:RefSeq:WP_019745635.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020553839.1
GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020553840.1
phytanoyl-CoA dioxygenase family protein
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: similar to AA sequence:RefSeq:WP_007728128.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749820.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749821.1
COORDINATES: similar to AA sequence:RefSeq:WP_005565446.1
COORDINATES: similar to AA sequence:RefSeq:WP_007733681.1
COORDINATES: similar to AA sequence:RefSeq:WP_007771958.1
COORDINATES: similar to AA sequence:RefSeq:WP_006244818.1
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019749519.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007728182.1
COORDINATES: similar to AA sequence:RefSeq:WP_003941236.1
COORDINATES: similar to AA sequence:RefSeq:WP_019748761.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019748760.1
ferric reductase-like transmembrane domain-containing protein
COORDINATES: protein motif:HMM:NF014477.2
COORDINATES: similar to AA sequence:RefSeq:WP_019748757.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019748756.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_019748755.1
COORDINATES: similar to AA sequence:RefSeq:WP_005244403.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012873.2
COORDINATES: similar to AA sequence:RefSeq:WP_019748738.1
COORDINATES: similar to AA sequence:RefSeq:WP_019748737.1
COORDINATES: similar to AA sequence:RefSeq:WP_019748736.1
COORDINATES: similar to AA sequence:RefSeq:WP_019748735.1
COORDINATES: similar to AA sequence:RefSeq:WP_012873386.1
COORDINATES: similar to AA sequence:RefSeq:WP_019748732.1
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018599811.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]
zinc-binding alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009472587.1
COORDINATES: similar to AA sequence:RefSeq:WP_019748729.1
COORDINATES: similar to AA sequence:RefSeq:WP_016884944.1
COORDINATES: similar to AA sequence:RefSeq:WP_020417990.1
GAF domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_005563455.1
COORDINATES: protein motif:HMM:NF025052.2
COORDINATES: similar to AA sequence:RefSeq:WP_019748722.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0015662 - P-type ion transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018770552.1
COORDINATES: similar to AA sequence:RefSeq:WP_018686838.1
COORDINATES: similar to AA sequence:RefSeq:WP_007300240.1
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016881445.1
COORDINATES: similar to AA sequence:RefSeq:WP_005261659.1
3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019748714.1
COORDINATES: similar to AA sequence:RefSeq:WP_019748713.1
COORDINATES: similar to AA sequence:RefSeq:WP_017681091.1
GO:0004805 - trehalose-phosphatase activity [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019748710.1
wax ester/triacylglycerol synthase family O-acyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_019748709.1
COORDINATES: protein motif:HMM:TIGR00072.1
COORDINATES: similar to AA sequence:RefSeq:WP_019748707.1
COORDINATES: similar to AA sequence:RefSeq:WP_018160401.1
COORDINATES: similar to AA sequence:RefSeq:WP_016881450.1
COORDINATES: protein motif:HMM:NF012257.2
GO:0030551 - cyclic nucleotide binding [Evidence IEA]
cyclic nucleotide-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019748703.1
4Fe-4S dicluster domain-containing protein
COORDINATES: protein motif:HMM:NF012792.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019748701.1
1-phosphofructokinase family hexose kinase
COORDINATES: similar to AA sequence:RefSeq:WP_017838402.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008986 - pyruvate, water dikinase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]; GO:0006090 - pyruvate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019748699.1
COORDINATES: similar to AA sequence:RefSeq:WP_019748698.1
GO:0004144 - diacylglycerol O-acyltransferase activity [Evidence IEA]
GO:0045017 - glycerolipid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611812.1
COORDINATES: similar to AA sequence:RefSeq:WP_020018282.1
COORDINATES: similar to AA sequence:RefSeq:WP_003945583.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749922.1
COORDINATES: protein motif:HMM:NF012242.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0140662 - ATP-dependent protein folding chaperone [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014928985.1
COORDINATES: similar to AA sequence:RefSeq:WP_005255850.1
COORDINATES: similar to AA sequence:RefSeq:WP_007296974.1
COORDINATES: similar to AA sequence:RefSeq:WP_017834061.1
COORDINATES: similar to AA sequence:RefSeq:WP_020105489.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005255862.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_005255858.1
COORDINATES: similar to AA sequence:RefSeq:WP_003938197.1
GO:0008233 - peptidase activity [Evidence IEA]; GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003943366.1
COORDINATES: protein motif:HMM:NF039605.1
COORDINATES: similar to AA sequence:RefSeq:WP_003942721.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749980.1
COORDINATES: similar to AA sequence:RefSeq:WP_019748129.1
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019750012.1
COORDINATES: similar to AA sequence:RefSeq:WP_003943851.1
COORDINATES: protein motif:HMM:NF028342.2
COORDINATES: similar to AA sequence:RefSeq:WP_020637802.1
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: protein motif:HMM:NF025669.2
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009475931.1
COORDINATES: similar to AA sequence:RefSeq:WP_005882707.1
leucine zipper domain-containing protein
COORDINATES: protein motif:HMM:NF018028.2
COORDINATES: similar to AA sequence:RefSeq:WP_007622893.1
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005941464.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749940.1
COORDINATES: similar to AA sequence:RefSeq:WP_005186292.1
COORDINATES: similar to AA sequence:RefSeq:WP_006372457.1
COORDINATES: similar to AA sequence:RefSeq:WP_009571028.1
GO:0019172 - glyoxalase III activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005263801.1
COORDINATES: similar to AA sequence:RefSeq:WP_020726718.1
COORDINATES: similar to AA sequence:RefSeq:WP_008717938.1
COORDINATES: similar to AA sequence:RefSeq:WP_020172539.1
COORDINATES: similar to AA sequence:RefSeq:WP_012691600.1
GO:0004846 - urate oxidase activity [Evidence IEA]
GO:0019628 - urate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015357324.1
COORDINATES: similar to AA sequence:RefSeq:WP_019666165.1
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_005142332.1
COORDINATES: similar to AA sequence:RefSeq:WP_010533859.1
COORDINATES: similar to AA sequence:RefSeq:WP_006554700.1
COORDINATES: similar to AA sequence:RefSeq:WP_006867951.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010838351.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018178819.1
COORDINATES: similar to AA sequence:RefSeq:WP_011209563.1
COORDINATES: similar to AA sequence:RefSeq:WP_014350679.1
COORDINATES: similar to AA sequence:RefSeq:WP_005206557.1
GO:0016790 - thiolester hydrolase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012526.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018104191.1
COORDINATES: similar to AA sequence:RefSeq:WP_020516197.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749954.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749955.1
COORDINATES: similar to AA sequence:RefSeq:WP_019747967.1
COORDINATES: similar to AA sequence:RefSeq:WP_003942806.1
GO:0019180 - dTDP-4-amino-4,6-dideoxygalactose transaminase activity [Evidence IEA]
GO:0009246 - enterobacterial common antigen biosynthetic process [Evidence IEA]
dTDP-4-amino-4,6-dideoxygalactose transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_076611468.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF037653.2
COORDINATES: protein motif:HMM:NF013079.2
COORDINATES: similar to AA sequence:RefSeq:WP_019324529.1
COORDINATES: similar to AA sequence:RefSeq:WP_011026959.1
COORDINATES: similar to AA sequence:RefSeq:WP_017627623.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749926.1
COORDINATES: similar to AA sequence:RefSeq:WP_012013602.1
COORDINATES: similar to AA sequence:RefSeq:WP_009480574.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599278.1
LysR substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: similar to AA sequence:RefSeq:WP_011599276.1
COORDINATES: similar to AA sequence:RefSeq:WP_007296136.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599274.1
COORDINATES: similar to AA sequence:RefSeq:WP_017849124.1
GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0006546 - glycine catabolic process [Evidence IEA]
aminomethyl-transferring glycine dehydrogenase subunit GcvPA
COORDINATES: similar to AA sequence:RefSeq:WP_007296139.1
aminomethyl-transferring glycine dehydrogenase subunit GcvPB
COORDINATES: similar to AA sequence:RefSeq:WP_005938822.1
COORDINATES: similar to AA sequence:RefSeq:WP_007296141.1
COORDINATES: protein motif:HMM:NF014640.2
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007728248.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749743.1
COORDINATES: similar to AA sequence:RefSeq:WP_005560282.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599907.1
COORDINATES: similar to AA sequence:RefSeq:WP_007533727.1
COORDINATES: similar to AA sequence:RefSeq:WP_007728260.1
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019749732.1
COORDINATES: similar to AA sequence:RefSeq:WP_007728264.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749730.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749729.1
COORDINATES: similar to AA sequence:RefSeq:WP_007728270.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749727.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007728275.1
COORDINATES: similar to AA sequence:RefSeq:WP_019749725.1
COORDINATES: similar to AA sequence:RefSeq:WP_007728279.1
COORDINATES: similar to AA sequence:RefSeq:WP_007728281.1
COORDINATES: similar to AA sequence:RefSeq:WP_005248988.1
GO:0004519 - endonuclease activity [Evidence IEA]
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017590167.1
COORDINATES: similar to AA sequence:RefSeq:WP_007297000.1
COORDINATES: similar to AA sequence:RefSeq:WP_006940226.1
COORDINATES: protein motif:HMM:NF024001.2
COORDINATES: protein motif:HMM:NF022354.2
abortive infection system antitoxin AbiGi family protein
COORDINATES: protein motif:HMM:NF016362.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019667864.1
COORDINATES: similar to AA sequence:RefSeq:WP_003944642.1
COORDINATES: similar to AA sequence:RefSeq:WP_005563647.1
COORDINATES: protein motif:HMM:NF012382.2
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012039211.1
GO:0004372 - glycine hydroxymethyltransferase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0070905 - serine binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0019264 - glycine biosynthetic process from serine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017361600.1
YggS family pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_010356114.1
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_011186054.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_007915608.1
MazG nucleotide pyrophosphohydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009739416.1
GO:0042925 - benzoate transmembrane transporter activity [Evidence IEA]
GO:0042919 - benzoate transport [Evidence IEA]
benzoate/H(+) symporter BenE family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_009075365.1
COORDINATES: similar to AA sequence:RefSeq:WP_005515823.1
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
COORDINATES: protein motif:HMM:NF012348.2
COORDINATES: protein motif:HMM:NF013584.2
COORDINATES: protein motif:HMM:NF014360.2
COORDINATES: protein motif:HMM:NF012345.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611377.1
COORDINATES: similar to AA sequence:RefSeq:WP_008973175.1
COORDINATES: protein motif:HMM:NF012422.2
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010696126.1
COORDINATES: similar to AA sequence:RefSeq:WP_013777531.1
COORDINATES: similar to AA sequence:RefSeq:WP_013396363.1
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: similar to AA sequence:RefSeq:WP_003945970.1
GO:0042546 - cell wall biogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007728221.1
COORDINATES: similar to AA sequence:RefSeq:WP_007728219.1
COORDINATES: similar to AA sequence:RefSeq:WP_010541359.1
GO:0003871 - 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0009086 - methionine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007300006.1
COORDINATES: protein motif:HMM:NF017539.2