Saccharopolyspora pogona strain NRRL30141 plasmid unnamed2, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.
Effects of the functional genomic on the growth development, nutrition metabolism and butenyl-spinosyns biosynthesis in Saccharopolyspora pogona
Submitted (02-JUL-2018) State Key Laboratory of Developmental Biology of Freshwater Fish, College of Life Science, Hunan Normal University, Yuelu, Changsha, Hunan 410006, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP031144.1.\nBacteria and source DNA available from Huan normal university.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2015\nAssembly Method :: HGAP v. 2.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 218.28x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/14/2022 05:39:56\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 9,229\nCDSs (total) :: 9,157\nGenes (coding) :: 8,678\nCDSs (with protein) :: 8,678\nGenes (RNA) :: 72\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 3\nPseudo Genes (total) :: 479\nCDSs (without protein) :: 479\nPseudo Genes (ambiguous residues) :: 0 of 479\nPseudo Genes (frameshifted) :: 188 of 479\nPseudo Genes (incomplete) :: 373 of 479\nPseudo Genes (internal stop) :: 41 of 479\nPseudo Genes (multiple problems) :: 113 of 479\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009946872.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010593488.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011874773.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:NP_216510.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_004559209.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020636258.1
COORDINATES: similar to AA sequence:RefSeq:WP_020636257.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010693637.1
COORDINATES: similar to AA sequence:RefSeq:WP_004920830.1
COORDINATES: similar to AA sequence:RefSeq:WP_011873771.1
COORDINATES: protein motif:HMM:NF033527.1
GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025079.2
COORDINATES: protein motif:HMM:NF012464.2
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014814.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010510905.1
COORDINATES: similar to AA sequence:RefSeq:WP_013416001.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024835.2
COORDINATES: protein motif:HMM:NF023857.2
COORDINATES: protein motif:HMM:NF037930.2
COORDINATES: similar to AA sequence:RefSeq:WP_013713110.1
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010315108.1
SsgA family sporulation/cell division regulator
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_017607471.1
COORDINATES: similar to AA sequence:RefSeq:WP_009315871.1
COORDINATES: similar to AA sequence:RefSeq:WP_006539339.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF022388.2
COORDINATES: similar to AA sequence:RefSeq:WP_019808605.1
COORDINATES: similar to AA sequence:RefSeq:WP_020129166.1
COORDINATES: similar to AA sequence:RefSeq:WP_013713153.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017972365.1
COORDINATES: protein motif:HMM:NF024139.2
COORDINATES: similar to AA sequence:RefSeq:WP_020670200.1
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014143508.1
COORDINATES: protein motif:HMM:NF012974.2
DnaB-like helicase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF019997.2
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013315.2
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:TIGR04187.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04186.1
COORDINATES: protein motif:HMM:NF040183.1
COORDINATES: similar to AA sequence:RefSeq:WP_020643397.1
COORDINATES: similar to AA sequence:RefSeq:WP_018103780.1
aminoglycoside phosphotransferase family protein
COORDINATES: protein motif:HMM:NF013775.2
COORDINATES: protein motif:HMM:NF012379.2
COORDINATES: similar to AA sequence:RefSeq:WP_014691234.1
COORDINATES: similar to AA sequence:RefSeq:WP_017975795.1
COORDINATES: similar to AA sequence:RefSeq:WP_020502033.1
COORDINATES: similar to AA sequence:RefSeq:WP_009156833.1
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: similar to AA sequence:RefSeq:WP_015624893.1
COORDINATES: protein motif:HMM:NF013676.2