Saccharopolyspora pogona strain NRRL30141 plasmid unnamed1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.
Effects of the functional genomic on the growth development, nutrition metabolism and butenyl-spinosyns biosynthesis in Saccharopolyspora pogona
Submitted (02-JUL-2018) State Key Laboratory of Developmental Biology of Freshwater Fish, College of Life Science, Hunan Normal University, Yuelu, Changsha, Hunan 410006, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP031143.1.\nBacteria and source DNA available from Huan normal university.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 2015\nAssembly Method :: HGAP v. 2.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 218.28x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/14/2022 05:39:56\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 9,229\nCDSs (total) :: 9,157\nGenes (coding) :: 8,678\nCDSs (with protein) :: 8,678\nGenes (RNA) :: 72\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 3\nPseudo Genes (total) :: 479\nCDSs (without protein) :: 479\nPseudo Genes (ambiguous residues) :: 0 of 479\nPseudo Genes (frameshifted) :: 188 of 479\nPseudo Genes (incomplete) :: 373 of 479\nPseudo Genes (internal stop) :: 41 of 479\nPseudo Genes (multiple problems) :: 113 of 479\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_020135055.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013357.2
COORDINATES: protein motif:HMM:NF012863.2
GDSL-type esterase/lipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009946949.1
COORDINATES: protein motif:HMM:NF040183.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF020952.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF013122.2
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: protein motif:HMM:TIGR03033.1
COORDINATES: similar to AA sequence:RefSeq:WP_010191133.1
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017617307.1
COORDINATES: protein motif:HMM:NF019146.2
COORDINATES: similar to AA sequence:RefSeq:WP_015804277.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003938861.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010692785.1
winged helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF022388.2
COORDINATES: protein motif:HMM:NF019322.2
COORDINATES: similar to AA sequence:RefSeq:WP_012877309.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_003087117.1
COORDINATES: protein motif:HMM:NF017850.2
COORDINATES: similar to AA sequence:RefSeq:WP_005515278.1
COORDINATES: protein motif:HMM:NF018704.2
COORDINATES: similar to AA sequence:RefSeq:WP_009066614.1
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:NF017520.2