Nonlabens spongiae strain JCM 13191 plasmid unnamed1.
Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Nonlabens.
Trade-off between light-utilization and light-protection in marine flavobacteria
Submitted (30-NOV-2016) Marine Microbiology, Atmosphere and Ocean Research Institute, The University of Tokyo, 5-1-5, Kashiwanoha, Kashiwa-shi, Chiba 277-8564, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nCP019345.1.\nPlasmid not circularized.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Sprai v. 0.9.5.1.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 34.24x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/05/2022 16:55:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,122\nCDSs (total) :: 3,075\nGenes (coding) :: 3,043\nCDSs (with protein) :: 3,043\nGenes (RNA) :: 47\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 37\nncRNAs :: 4\nPseudo Genes (total) :: 32\nCDSs (without protein) :: 32\nPseudo Genes (ambiguous residues) :: 0 of 32\nPseudo Genes (frameshifted) :: 18 of 32\nPseudo Genes (incomplete) :: 12 of 32\nPseudo Genes (internal stop) :: 7 of 32\nPseudo Genes (multiple problems) :: 5 of 32\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##
marine sponge Lissodendoryx isodictyalis in the Bahamas
COORDINATES: similar to AA sequence:RefSeq:WP_013550057.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015025599.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011709916.1
COORDINATES: similar to AA sequence:RefSeq:WP_013751040.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014783027.1
COORDINATES: protein motif:HMM:NF012743.2
COORDINATES: similar to AA sequence:RefSeq:WP_010518779.1
COORDINATES: protein motif:HMM:NF024573.2
COORDINATES: similar to AA sequence:RefSeq:WP_018945442.1