Chlamydia psittaci 6BC plasmid pCps6BC, complete sequence.
type: Entry
definition: Chlamydia psittaci 6BC plasmid pCps6BC, complete sequence.
sequence version: NC_017288.1
sequence date: 2023-03-25
sequence: sequence
division: CON
label: NC_017288.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02603382
keyword: RefSeq
source: Chlamydia psittaci 6BC (Chlamydophila psittaci 6BC)
organism: Chlamydia psittaci 6BC
taxonomy: Bacteria; Chlamydiota; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.
reference: 1
references: 21622741
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP002587.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. unspecified\nGenome Coverage :: 12x\nSequencing Technology :: ABI3730\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 10:51:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,037\nCDSs (total) :: 993\nGenes (coding) :: 987\nCDSs (with protein) :: 987\nGenes (RNA) :: 44\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 38\nncRNAs :: 3\nPseudo Genes (total) :: 6\nCDSs (without protein) :: 6\nPseudo Genes (ambiguous residues) :: 0 of 6\nPseudo Genes (frameshifted) :: 2 of 6\nPseudo Genes (incomplete) :: 3 of 6\nPseudo Genes (internal stop) :: 1 of 6\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 7553
topology: circular
so has quality: SO_0000988
location: 1..7553
location: region:1-7553:1
RO_0002162: 331636

NC_017288
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02603382
type: BioSample
SIO_000068: biosample

1
title: Genome sequences of the zoonotic pathogens Chlamydia psittaci 6BC and Cal10
author: Grinblat-Huse, V.
author: Drabek, E.F.
author: Creasy, H.H.
author: Daugherty, S.C.
author: Jones, K.M.
author: Santana-Cruz, I.
author: Tallon, L.J.
author: Read, T.D.
author: Hatch, T.P.
author: Bavoil, P.
author: Myers, G.S.
journal: J Bacteriol
volume: 193
issue: 15
pages: 4039-4040
year: 2011
pubmed: 21622741

21622741
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Huse, V.
author: Drabek, E.F.
author: Huot Creasy, H.
author: Daugherty, S.
author: Jones, K.M.
author: Santana-Cruz, I.
author: Tallon, L.J.
author: Read, T.D.
author: Hatch, T.P.
author: Bavoil, P.
author: Myers, G.S.A.
journal: Submitted (18-MAR-2011) Institute for Genome Sciences, University of Maryland School of Medicine, 801 West Baltimore Street, Baltimore, MD 21201, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7553:1
position: 7553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-7553:1:source
so part of: sequence
organism: Chlamydia psittaci 6BC
mol type: genomic DNA
strain: 6BC
culture collection: ATCC:VR-125
type material: type strain of Chlamydia psittaci
plasmid: pCps6BC

331636
type: Taxonomy
SIO_000068: taxonomy

G5O_RS10235
type: Gene
subclass of: SO_0000704
RO_0002162: 331636
locus tag: G5O_RS10235
old locus tag: G5O_p0001
so part of: sequence
location: complement(17..940)
location: region:17-940:-1
so has part: feature:17-940:-1:exon
subclass of: SO_0000010

12242268
type: Gene
SIO_000068: ncbigene

position:17:-1
position: 17
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:940:-1
position: 940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17-940:-1:exon

G5O_RS10235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 331636
locus tag: G5O_RS10235
old locus tag: G5O_p0001
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011109752.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MSGLSHHHKSRLFLTVLEAANVWLATLSPITRKNYASGIKFLVANHILDGSMKLEGLVCCDHCDILNRIKSLTFTYSGKPVSEASKQARAACYISFTKFLYRLTKGVIKHASPSKDFGNPTFYKIRDKVKTEFISKREWLLFFDALKKISFRDYLIGKLIIQGVRKLTEVISLRTEDISFAKNQVTFKVKKRQNRYQEVKVSYPNFLMQELQDYLGNREGWVFVSGEGQQVAINQVYYYFKLAEGDINSPIKVTPHVLRASALAYLKKMGFADQEIMRVSCLSSTQMLSAYDTGMTDNLTSQLPLIF
SIO_010081: G5O_RS10235
subclass of: SO_0000673
so part of: G5O_RS10235
location: complement(17..940)
location: region:17-940:-1
so has part: feature:17-940:-1:exon

WP_010891146.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17-940:-1:exon

G5O_RS10240
type: Gene
subclass of: SO_0000704
RO_0002162: 331636
locus tag: G5O_RS10240
old locus tag: G5O_p0002
so part of: sequence
location: complement(1162..1902)
location: region:1162-1902:-1
so has part: feature:1162-1902:-1:exon
subclass of: SO_0000010

12242269
type: Gene
SIO_000068: ncbigene

position:1162:-1
position: 1162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1902:-1
position: 1902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1162-1902:-1:exon

G5O_RS10240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 331636
locus tag: G5O_RS10240
old locus tag: G5O_p0002
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006343673.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CT583 family protein
translation: MSKLTKEASAFFQKNQENTTKEFLKKEFAMDVFSVSLSDIEKEQIENLVVSQNSKFDEEYNRGLASIKLLTGQIKSIQKQHVLLIGEKIYKVREILKNMNSPDTTFSSWINLVFRTKSSAYNALGYYELFISLPDKNTKSLFQSIPYKTAYLLASRKGSVKDKLKVLGKISGLSNALAIDVLNKFLPPLKSSQTERCVDFEEKNKEVSEKLIDILKIVSSGLELSEYNKNLLHQLFEKTLKVDIRC
SIO_010081: G5O_RS10240
subclass of: SO_0000673
so part of: G5O_RS10240
location: complement(1162..1902)
location: region:1162-1902:-1
so has part: feature:1162-1902:-1:exon

WP_006343673.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1162-1902:-1:exon

G5O_RS10245
type: Gene
subclass of: SO_0000704
RO_0002162: 331636
locus tag: G5O_RS10245
old locus tag: G5O_p0003
so part of: sequence
location: complement(1899..2678)
location: region:1899-2678:-1
so has part: feature:1899-2678:-1:exon
subclass of: SO_0000010

12242270
type: Gene
SIO_000068: ncbigene

position:1899:-1
position: 1899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2678:-1
position: 2678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1899-2678:-1:exon

G5O_RS10245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 331636
locus tag: G5O_RS10245
old locus tag: G5O_p0003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014951469.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKTLAFCSFKGGTGKTTLSLNIGSNLAQVSRKKVLLVDLDPQANLTTGLGVQIQDDHSLNEILRHSNEIRRAIHKTKIENLDIIPSSVLVEDFRGLDKDISLSVNHLHLALQKVQDQYDVCILDTPPSLGILSQEAFLASDYLVVCLTPEPFSILGLQKIKEFCSTIGNNLDILGIVFSFWDERNSTNSTYMDIIETIYEGKILSSKIRRDVTVSRSLLKESSVINAYPNSRAAKDILNLTKEIENKLFSDEKLVQETL
SIO_010081: G5O_RS10245
subclass of: SO_0000673
so part of: G5O_RS10245
location: complement(1899..2678)
location: region:1899-2678:-1
so has part: feature:1899-2678:-1:exon

WP_006343674.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1899-2678:-1:exon

G5O_RS10250
type: Gene
subclass of: SO_0000704
RO_0002162: 331636
locus tag: G5O_RS10250
so part of: sequence
location: complement(2709..3017)
location: region:2709-3017:-1
so has part: feature:2709-3017:-1:exon
subclass of: SO_0000010

23672220
type: Gene
SIO_000068: ncbigene

position:2709:-1
position: 2709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3017:-1
position: 3017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2709-3017:-1:exon

G5O_RS10250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 331636
locus tag: G5O_RS10250
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012209817.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Virulence plasmid protein pGP4-D
translation: MNDKQNMTNDFIKIVKDVEKDFPELDIKMKVHKEKITFLNSPLELYHKSISVILNLLNQIQTSLSLFPDSPIVEQMEHNNLKLKKALIMLILSRKDMFSKAE
SIO_010081: G5O_RS10250
subclass of: SO_0000673
so part of: G5O_RS10250
location: complement(2709..3017)
location: region:2709-3017:-1
so has part: feature:2709-3017:-1:exon

WP_006343675.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2709-3017:-1:exon

G5O_RS10255
type: Gene
subclass of: SO_0000704
RO_0002162: 331636
gene: pgp3
locus tag: G5O_RS10255
old locus tag: G5O_p0004
so part of: sequence
location: complement(3112..3906)
location: region:3112-3906:-1
so has part: feature:3112-3906:-1:exon
subclass of: SO_0000010

12242271
type: Gene
SIO_000068: ncbigene

position:3112:-1
position: 3112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3906:-1
position: 3906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3112-3906:-1:exon

G5O_RS10255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 331636
gene: pgp3
locus tag: G5O_RS10255
old locus tag: G5O_p0004
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014951470.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: virulence factor Pgp3
translation: MGNSGFYLNDTQNCVFADNIKLGQMESPLQDQQLILGTKSTPTAAKLNAKEGLKIDISNTNAQSATIDFSIDADTLSKLILDQIQKGLVDAIIKDITNSLIQEVIDRIISDKNLALTKAFKNFSLSEKIQCNGLFTKSNIGTLLGGTEIGKFTITPDNVNSMFLISADIIASRMEGNVVLALVREGDSSPCAISYGYSSGIPNVCSLRTAVNNTGTDPVTFSLRVGGMDSGVVWVNALANGDSILGTTATSNISFLEVKQQTNG
SIO_010081: G5O_RS10255
subclass of: SO_0000673
so part of: G5O_RS10255
location: complement(3112..3906)
location: region:3112-3906:-1
so has part: feature:3112-3906:-1:exon

WP_006343676.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3112-3906:-1:exon

G5O_RS10260
type: Gene
subclass of: SO_0000704
RO_0002162: 331636
locus tag: G5O_RS10260
old locus tag: G5O_p0005
so part of: sequence
location: complement(3962..5005)
location: region:3962-5005:-1
so has part: feature:3962-5005:-1:exon
subclass of: SO_0000010

12242272
type: Gene
SIO_000068: ncbigene

position:3962:-1
position: 3962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5005:-1
position: 5005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3962-5005:-1:exon

G5O_RS10260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 331636
locus tag: G5O_RS10260
old locus tag: G5O_p0005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014951478.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Virulence plasmid protein pGP2-D
translation: MVKSENQIIKSSLHLENQKFGRKPQLSEDLFELFPSICTESKIEVIGLDLQPSHYHALAAIQKLLTATNYRGNLEGSYLSRETNTFKFEGTIPRIKFTKSEYLEAYGVKKYKTSRNKNEFGGKEALIALEALYHLGNEPYLIVATRKRWNKGEEVVDRYQTFSPILRICEGWEGLTPKENKALDEEPFLNLISKKHKGFIIEPCPIIVDQIDSYFVLKPANMYQEIKLRFPNASKFTYTFIDWIVSTATRKKMNSSGSKEWPDKIEIGFENLSYTLRMNRYITSRNWKKIESAINRCIEIAIELKWLNKHERIQGKTISKKEVFYLNKSKFQQISTNKTIQSTTNKN
SIO_010081: G5O_RS10260
subclass of: SO_0000673
so part of: G5O_RS10260
location: complement(3962..5005)
location: region:3962-5005:-1
so has part: feature:3962-5005:-1:exon

WP_010891148.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3962-5005:-1:exon

G5O_RS10265
type: Gene
subclass of: SO_0000704
RO_0002162: 331636
locus tag: G5O_RS10265
old locus tag: G5O_p0006
so part of: sequence
location: complement(4999..6375)
location: region:4999-6375:-1
so has part: feature:4999-6375:-1:exon
subclass of: SO_0000010

12242273
type: Gene
SIO_000068: ncbigene

position:4999:-1
position: 4999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6375:-1
position: 6375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4999-6375:-1:exon

G5O_RS10265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 331636
locus tag: G5O_RS10265
old locus tag: G5O_p0006
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014951477.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replicative DNA helicase
translation: MIKQSEEEKDLLDVEFFVLGQAVNYLEHAHVVVRRLSEHHFKSENHKNIFLLIRDILRDRDTISISLIWEEIKRRNLDKSMDVSYLIHMSQNADIPIDLDHHIDFLHEKHVNNLLKEFLDSSFQDFTRYPNRRSPYTLIDQFKERLDDIYEKTSYPRRKHIGKTVYDIFSSGENGKASVIAQIRHRYDYRSRHKIDYVDGLPTGYSSIDEHSIILSKGNFVVIAARPAMGKTAFAIDIALNLVLEQGKAVGFISLEMSPNQIVERIISNLSETSCEQLKRGNFSRDVLSKIESIGTKLKGTHFFICDNKSTDLNTLIDQARELRENQGIDALFIDYLQLIGSSKKAENRQNEIAEISRQLRKLAVELQIPVVCLSQLSRKVEDRGDKRPMLSDLRDSGQIEQDADVILFLHRKDYYSQEATKGLSEIIVGKNRHGSVFSTTLRFNSCTGKFTIQKEAW
SIO_010081: G5O_RS10265
subclass of: SO_0000673
so part of: G5O_RS10265
location: complement(4999..6375)
location: region:4999-6375:-1
so has part: feature:4999-6375:-1:exon

WP_006343678.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4999-6375:-1:exon

G5O_RS10270
type: Gene
subclass of: SO_0000704
RO_0002162: 331636
locus tag: G5O_RS10270
old locus tag: G5O_p0007
so part of: sequence
location: 6518..7486
location: region:6518-7486:1
so has part: feature:6518-7486:1:exon
subclass of: SO_0000010

12242274
type: Gene
SIO_000068: ncbigene

position:6518:1
position: 6518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7486:1
position: 7486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6518-7486:1:exon

G5O_RS10270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 331636
locus tag: G5O_RS10270
old locus tag: G5O_p0007
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006343679.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MFGNEVYSNNLTHQEFLSVRNQHLWEKLRDIPLYEAVHTWLSSLTNHTSRSYRGSILALERIGLISLKMPLQQFALLNHNIILDAIKQIPTTVVCWSEGTKQVRAACYISLTKFLNRVTSGIISIAQPSHQESNKTFYKIRDLVKTNAMNQVERVLFLEELSKINYRDWLIAQTILQGAKRVTEALSVTTDHICFENGVISFNQIKSRGVFKTTIITYPQKFMKLLQDYVGERKGLVFITKKGRGVGLKQLAGTFAKAGIKAHIPFKVTPHVLRATAVTEYKKMGCSDSDIMKITGHSSSKMIYAYDKSTIADNASKKVSLI
SIO_010081: G5O_RS10270
subclass of: SO_0000673
so part of: G5O_RS10270
location: 6518..7486
location: region:6518-7486:1
so has part: feature:6518-7486:1:exon

WP_044025850.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6518-7486:1:exon