Zymobacter palmae strain IAM14233 plasmid pZB5060, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Zymobacter group; Zymobacter.
Zymobacter palmae IAM14233 (=T109) whole genome analysis
Submitted (11-SEP-2018) Contact:Hideshi Yanase Tottori University, Chemistry and Biotechnology; Koyamacho-Minami, Tottori, Tottori 680-8552, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP018934.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PGA (Paracel Genome Assembler)\nGenome Coverage :: 7.7X\nSequencing Technology :: Sanger\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/25/2022 03:42:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,684\nCDSs (total) :: 2,581\nGenes (coding) :: 2,570\nCDSs (with protein) :: 2,570\nGenes (RNA) :: 103\nrRNAs :: 8, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 8, 8 (5S, 16S, 23S)\ntRNAs :: 75\nncRNAs :: 4\nPseudo Genes (total) :: 11\nCDSs (without protein) :: 11\nPseudo Genes (ambiguous residues) :: 0 of 11\nPseudo Genes (frameshifted) :: 3 of 11\nPseudo Genes (incomplete) :: 6 of 11\nPseudo Genes (internal stop) :: 2 of 11\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007247495.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
type VI secretion system tube protein Hcp
COORDINATES: similar to AA sequence:RefSeq:WP_000165992.1
Rop family plasmid primer RNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018877550.1
COORDINATES: similar to AA sequence:RefSeq:WP_011918370.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012409.2