Clavibacter michiganensis subsp. michiganensis strain UF1 plasmid pCM1-UF1, complete sequence.
Clavibacter michiganensis subsp. michiganensis
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Microbacteriaceae; Clavibacter.
Submitted (09-NOV-2018) Plant Pathology, University of Florida, 1444 Fifield Hall, Gainesville, FL 32611, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP033725.1.\nBacteria and source DNA available from Frank F White.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 01-JAN-2018\nAssembly Method :: Canu v. 1.5\nAssembly Name :: UF1\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 396.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/23/2022 03:26:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,198\nCDSs (total) :: 3,143\nGenes (coding) :: 3,115\nCDSs (with protein) :: 3,115\nGenes (RNA) :: 55\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 4\nPseudo Genes (total) :: 28\nCDSs (without protein) :: 28\nPseudo Genes (ambiguous residues) :: 0 of 28\nPseudo Genes (frameshifted) :: 4 of 28\nPseudo Genes (incomplete) :: 25 of 28\nPseudo Genes (internal stop) :: 4 of 28\nPseudo Genes (multiple problems) :: 4 of 28\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011931142.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011931257.1
COORDINATES: similar to AA sequence:RefSeq:WP_011931144.1
GO:0030248 - cellulose binding [Evidence IEA]
expansin EXLX1 family cellulose-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011931146.1
COORDINATES: similar to AA sequence:RefSeq:WP_011931147.1
COORDINATES: similar to AA sequence:RefSeq:WP_012296900.1
COORDINATES: similar to AA sequence:RefSeq:WP_012296901.1
COORDINATES: protein motif:HMM:NF024254.2
COORDINATES: similar to AA sequence:RefSeq:WP_005053966.1
COORDINATES: protein motif:HMM:NF012651.2
GO:0003697 - single-stranded DNA binding [Evidence IEA]