Clavibacter michiganensis subsp. michiganensis strain UF1 plasmid pCM1-UF1, complete sequence.
type: Entry
definition: Clavibacter michiganensis subsp. michiganensis strain UF1 plasmid pCM1-UF1, complete sequence.
sequence version: NZ_CP033725.1
sequence date: 2022-12-23
sequence: sequence
division: CON
label: NZ_CP033725.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN10388396
keyword: RefSeq
source: Clavibacter michiganensis subsp. michiganensis
organism: Clavibacter michiganensis subsp. michiganensis
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Microbacteriaceae; Clavibacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP033725.1.\nBacteria and source DNA available from Frank F White.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 01-JAN-2018\nAssembly Method :: Canu v. 1.5\nAssembly Name :: UF1\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 396.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/23/2022 03:26:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,198\nCDSs (total) :: 3,143\nGenes (coding) :: 3,115\nCDSs (with protein) :: 3,115\nGenes (RNA) :: 55\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 4\nPseudo Genes (total) :: 28\nCDSs (without protein) :: 28\nPseudo Genes (ambiguous residues) :: 0 of 28\nPseudo Genes (frameshifted) :: 4 of 28\nPseudo Genes (incomplete) :: 25 of 28\nPseudo Genes (internal stop) :: 4 of 28\nPseudo Genes (multiple problems) :: 4 of 28\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 20560
topology: circular
so has quality: SO_0000988
location: 1..20560
location: region:1-20560:1
RO_0002162: 33013

NZ_CP033725
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN10388396
type: BioSample
SIO_000068: biosample

1
title: Clavibacter michiganensis subsp. michiganensis
author: Huguet-Tapia, J.C.
author: Harmon, C.L.
author: Loria, R.
author: White, F.
journal: Unpublished

2
title: Direct Submission
author: Huguet-Tapia, J.C.
author: Harmon, C.L.
author: Loria, R.
author: White, F.
journal: Submitted (09-NOV-2018) Plant Pathology, University of Florida, 1444 Fifield Hall, Gainesville, FL 32611, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20560:1
position: 20560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20560:1:source
so part of: sequence
organism: Clavibacter michiganensis subsp. michiganensis
mol type: genomic DNA
strain: UF1
host: Tomato
sub species: michiganensis
plasmid: pCM1-UF1
country: USA:Florida
collection date: 2012-01-01

33013
type: Taxonomy
SIO_000068: taxonomy

EFE39_RS15430
type: Gene
subclass of: SO_0000704
RO_0002162: 33013
locus tag: EFE39_RS15430
old locus tag: EFE39_15395
so part of: sequence
location: join(20032..20560,1..2)
location: region:1-20560:1
so has part: feature:20032-20560:1:exon
so has part: feature:1-2:1:exon
subclass of: SO_0000010

56887339
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:20032-20560:1:exon

position:20032:1
position: 20032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-2:1:exon

position:2:1
position: 2
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

EFE39_RS15430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33013
locus tag: EFE39_RS15430
old locus tag: EFE39_15395
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRERAASAGAHVPSIAEAASATDETRQLSYAAYKFGRSLVREAAEGARPLVDVAASLDAAHRWDGEYLSLRNDFLLTGAVDGGLRLLLARGVEAAEADHVHDEASSFGVPASALAVASNWLSRALSQGQTTTEASLDALAEVHIGIIRKDATIRFLVLALAGVTTRAVAVHRSAR
SIO_010081: EFE39_RS15430
subclass of: SO_0000673
so part of: EFE39_RS15430
location: join(20032..20560,1..2)
location: region:1-20560:1
so has part: feature:20032-20560:1:exon
so has part: feature:1-2:1:exon

WP_079535019.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20032-20560:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-2:1:exon

EFE39_RS15435
type: Gene
subclass of: SO_0000704
RO_0002162: 33013
locus tag: EFE39_RS15435
old locus tag: EFE39_15400
so part of: sequence
location: join(20559..20560,1..790)
location: region:1-20560:1
so has part: feature:20559-20560:1:exon
so has part: feature:1-790:1:exon
subclass of: SO_0000010

56887340
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:20559-20560:1:exon

position:20559:1
position: 20559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-790:1:exon

position:790:1
position: 790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

EFE39_RS15435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33013
locus tag: EFE39_RS15435
old locus tag: EFE39_15400
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011931142.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HNH endonuclease family protein
translation: MTRRRRRLLVVGAVLLSACGVICAGYYSVDLVHPGSAARAGTSADSGTPAAAASGPVVDVLTSAGLVRGGVVDAAAVRSLVDKLPADTHARTPAYDRAAYGPSWADTDHNGCDQRNDVLARDLTAVTYTKADPGCTVATGHLADVYTGRSIDFARGKTTSAAVQIDHLVPLGWAWQHGAAGWTGERREQLATDVNNLQAVDGPTNEAKSDQGPATWLPPAVGYDCLYVTRFAYVLRTYELTIDDADRAAIDRTLDGCSSPAAG
SIO_010081: EFE39_RS15435
subclass of: SO_0000673
so part of: EFE39_RS15435
location: join(20559..20560,1..790)
location: region:1-20560:1
so has part: feature:20559-20560:1:exon
so has part: feature:1-790:1:exon

WP_079535018.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20559-20560:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-790:1:exon

EFE39_RS15440
type: Gene
subclass of: SO_0000704
RO_0002162: 33013
locus tag: EFE39_RS15440
old locus tag: EFE39_15405
so part of: sequence
location: complement(773..1144)
location: region:773-1144:-1
so has part: feature:773-1144:-1:exon
subclass of: SO_0000010

56887341
type: Gene
SIO_000068: ncbigene

position:773:-1
position: 773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1144:-1
position: 1144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:773-1144:-1:exon

EFE39_RS15440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33013
locus tag: EFE39_RS15440
old locus tag: EFE39_15405
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011931257.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKVKSKLDGIDCLVRDVGAHPWAHLEAGYWRIQVEDQPVLGYVMRHRAELGDPFTFEIYADARNELGQRIWLRREESLNSAAAWMIQNNDRLITFAARHAAADVAGPLEPGDVGTERLPGGG
SIO_010081: EFE39_RS15440
subclass of: SO_0000673
so part of: EFE39_RS15440
location: complement(773..1144)
location: region:773-1144:-1
so has part: feature:773-1144:-1:exon

WP_157444683.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:773-1144:-1:exon

EFE39_RS15445
type: Gene
subclass of: SO_0000704
RO_0002162: 33013
locus tag: EFE39_RS15445
old locus tag: EFE39_15410
so part of: sequence
location: 1566..3743
location: region:1566-3743:1
so has part: feature:1566-3743:1:exon
subclass of: SO_0000010

56887342
type: Gene
SIO_000068: ncbigene

position:1566:1
position: 1566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3743:1
position: 3743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1566-3743:1:exon

EFE39_RS15445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33013
locus tag: EFE39_RS15445
old locus tag: EFE39_15410
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011931144.1
GO function: GO:0030248 - cellulose binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: expansin EXLX1 family cellulose-binding protein
translation: MTFRQVRASLVLRLVLLLALVVGTTSAAFAAPVSAATVAGPVAAASSPGWLHTAGGKIVTASGAPYTIRGIAWFGMETSSCAPHGLDTITLAGGMQHIKQMGFTTVRLPFSNQCLAASGVTGVSADPSLAGLTPLQVMDHVVASAKSAGLDVILDQHRPDSGGQSELWYTSQYPESRWISDWRMLAKRYASDPAVIGVDLHNEPHGAATWGTGAATTDWRAAAERGGNAVLAENPNLLVLVEGIDHEADGSGTWWGGALGLVGNAPVRLSVANRVVYSPHDYPSTIYGQSWFSASNYPANLPGIWDAHWGYLAKKDIAPVLVGEFGTKFETTSDKQWLNTLVGYLSSTGISSSFWAFNPNSGDTGGIVKSDWVTPEQAKLDALAPILHPSPGSGPGSGGSGSQPAPQPDPANPGAVSAKWQPGSSWASGYVANIDVTATAAVTGWTVSWASPGTTRVVNSWGMRCSVASGTVSCTGTDWASKLAAGQTVHVGLQASGGPAPSSPRLTATAAAVPPAQPTPPARPTTHGRATHYSLGQGNTIANGNCSMPAVPADRMYVAVSSPEYSGAAACGTFLDVTGPKGTVRVQVADQCHGCEVGHLDLSEEAFRALGDFNAGIIPISYVTVRDPAGPTVAIRVKEGSSRWWAGLQVLNAGNRIDRVEIQAGRQWLPLTRTDYGYWVTPSPIQDGPLTVKVTDQYGRAVVLPGLRMAPGEIQRTASRFYPVH
SIO_010081: EFE39_RS15445
subclass of: SO_0000673
so part of: EFE39_RS15445
location: 1566..3743
location: region:1566-3743:1
so has part: feature:1566-3743:1:exon

WP_227267306.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1566-3743:1:exon

EFE39_RS15450
type: Gene
subclass of: SO_0000704
RO_0002162: 33013
locus tag: EFE39_RS15450
so part of: sequence
location: 3867..4265
location: region:3867-4265:1
so has part: feature:3867-4265:1:exon
subclass of: SO_0000010

56887343
type: Gene
SIO_000068: ncbigene

position:3867:1
position: 3867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4265:1
position: 4265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3867-4265:1:exon

EFE39_RS15450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33013
locus tag: EFE39_RS15450
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSGQQLVIFAMVGAVGPIGAITLVRSQRQAIYTPMQLIGQSVGFVTGLVLAPYVALHLSGAPRAANLVLLVGPIILLLNPVLYGILSVRERHRSRLRDLEMGLLPHAKRLINWEDILIPGLSIRPYSRCLPS
SIO_010081: EFE39_RS15450
subclass of: SO_0000673
so part of: EFE39_RS15450
location: 3867..4265
location: region:3867-4265:1
so has part: feature:3867-4265:1:exon

WP_128517013.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3867-4265:1:exon

EFE39_RS15455
type: Gene
subclass of: SO_0000704
RO_0002162: 33013
locus tag: EFE39_RS15455
old locus tag: EFE39_15415
so part of: sequence
location: 4313..4516
location: region:4313-4516:1
so has part: feature:4313-4516:1:exon
subclass of: SO_0000010

56887344
type: Gene
SIO_000068: ncbigene

position:4313:1
position: 4313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4516:1
position: 4516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4313-4516:1:exon

EFE39_RS15455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33013
locus tag: EFE39_RS15455
old locus tag: EFE39_15415
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVSGSVIVTGALIAGYAMAVAQRLRRNAKYREHELLEAGIAWRERHAKEAGYEAGYRDGFTHGRDAS
SIO_010081: EFE39_RS15455
subclass of: SO_0000673
so part of: EFE39_RS15455
location: 4313..4516
location: region:4313-4516:1
so has part: feature:4313-4516:1:exon

WP_128517012.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4313-4516:1:exon

EFE39_RS15460
type: Gene
subclass of: SO_0000704
RO_0002162: 33013
locus tag: EFE39_RS15460
old locus tag: EFE39_15420
so part of: sequence
location: 4601..4888
location: region:4601-4888:1
so has part: feature:4601-4888:1:exon
subclass of: SO_0000010

56887345
type: Gene
SIO_000068: ncbigene

position:4601:1
position: 4601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4888:1
position: 4888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4601-4888:1:exon

EFE39_RS15460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33013
locus tag: EFE39_RS15460
old locus tag: EFE39_15420
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011931146.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGAAKWMLPAVGWDCRYVTRFAYVLSTYELTVDEADRGAIDHILDGSSPAAGKALGADVAGLELPGDVGGRNGGRELYRERDEPIASQDERGSRI
SIO_010081: EFE39_RS15460
subclass of: SO_0000673
so part of: EFE39_RS15460
location: 4601..4888
location: region:4601-4888:1
so has part: feature:4601-4888:1:exon

WP_079535042.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4601-4888:1:exon

EFE39_RS15465
type: Gene
subclass of: SO_0000704
RO_0002162: 33013
locus tag: EFE39_RS15465
old locus tag: EFE39_15425
so part of: sequence
location: complement(4904..5845)
location: region:4904-5845:-1
so has part: feature:4904-5845:-1:exon
subclass of: SO_0000010

56887346
type: Gene
SIO_000068: ncbigene

position:4904:-1
position: 4904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5845:-1
position: 5845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4904-5845:-1:exon

EFE39_RS15465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33013
locus tag: EFE39_RS15465
old locus tag: EFE39_15425
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011931147.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: serine protease
translation: MPLTLLACSVGAASASAAPTPSVPASVTSPGSDPNAVSVITQSQHERDATQSYWTPERLREADTRAGVRQDADGVSAQLNSTVVDAREINSLGVLFGRKDGRPWRCSANAVDARNLSVVSTAGHCIAERGHTIDHLIFAAGYRGPNSTPLFGTFDVLWSVAPNGWTLQHGDGFDTAFVKVDTRRETRTDGSAHPGHPVLGQSGPTMSGVAFAATPTGYAAAYGYPGAIQNGNVPVRCSDEIQTLLPTVGPYLRIMDGCENFSGGASGGPVVQNVSGHRRVTGTVEGYVPGTHEVRVTYWETAARNSWEYAQTH
SIO_010081: EFE39_RS15465
subclass of: SO_0000673
so part of: EFE39_RS15465
location: complement(4904..5845)
location: region:4904-5845:-1
so has part: feature:4904-5845:-1:exon

WP_079535045.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4904-5845:-1:exon

EFE39_RS15470
type: Gene
subclass of: SO_0000704
RO_0002162: 33013
locus tag: EFE39_RS15470
old locus tag: EFE39_15430
so part of: sequence
location: complement(6529..6990)
location: region:6529-6990:-1
so has part: feature:6529-6990:-1:exon
subclass of: SO_0000010

56887347
type: Gene
SIO_000068: ncbigene

position:6529:-1
position: 6529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6990:-1
position: 6990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6529-6990:-1:exon

EFE39_RS15470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33013
locus tag: EFE39_RS15470
old locus tag: EFE39_15430
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012296900.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRDVMHGLRRAKVGKVHWHEESEPRRLQLAAAVAELALERLVVVRSVDSTEPFERRRRKTMERLLHELTMRDVALLVAESRGPADDRRDRDHLDTLRAARALSGPIRLDHRRGPVEPALWVADIICGAIVQDRVGNPRPLAALGEIQMITVDG
SIO_010081: EFE39_RS15470
subclass of: SO_0000673
so part of: EFE39_RS15470
location: complement(6529..6990)
location: region:6529-6990:-1
so has part: feature:6529-6990:-1:exon

WP_231689107.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6529-6990:-1:exon

EFE39_RS15475
type: Gene
subclass of: SO_0000704
RO_0002162: 33013
locus tag: EFE39_RS15475
old locus tag: EFE39_15435
so part of: sequence
location: complement(7092..7721)
location: region:7092-7721:-1
so has part: feature:7092-7721:-1:exon
subclass of: SO_0000010

56887348
type: Gene
SIO_000068: ncbigene

position:7092:-1
position: 7092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7721:-1
position: 7721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7092-7721:-1:exon

EFE39_RS15475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33013
locus tag: EFE39_RS15475
old locus tag: EFE39_15435
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012296901.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTSSVLVGYARVSTDAQDLTAQQDALQALGVSTRLIYSDKGMTGTNRDRPGLREALAACREGDTLVVTKLDRLARSLRDATDIAEELTQREVRLNLGGAVYDPTDPVGRLLFNVLGMVAEFESDLIRARTREGMAVARVRGKLKGRKPKLSPAQERHLVALHRAGDHSVSELVELFGIGRATVYRALDRHPVTTSAEVTLPRVDDEPTS
SIO_010081: EFE39_RS15475
subclass of: SO_0000673
so part of: EFE39_RS15475
location: complement(7092..7721)
location: region:7092-7721:-1
so has part: feature:7092-7721:-1:exon

WP_011931149.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7092-7721:-1:exon

EFE39_RS15480
type: Gene
subclass of: SO_0000704
RO_0002162: 33013
locus tag: EFE39_RS15480
old locus tag: EFE39_15445
so part of: sequence
location: 8754..9515
location: region:8754-9515:1
so has part: feature:8754-9515:1:exon
subclass of: SO_0000010

56887349
type: Gene
SIO_000068: ncbigene

position:8754:1
position: 8754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9515:1
position: 9515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8754-9515:1:exon

EFE39_RS15480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33013
locus tag: EFE39_RS15480
old locus tag: EFE39_15445
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSTSTQSAIGPVLVAHLSAPRFASYLAVASDADHALELYRWNVEMAGALHEMLGLAEVFVRNAIDAELQKWNAAQPPGFGTTYDSRWVENPARPLWAILNPPSSHPHAPRRSTYNTAFSRAEEDRHLRGSTHRRHGMPVDHDDVVAHITFGTWKALLPRVQQNGTLGRPSQMVLWSGALQDAFSHHKDPAVIGYWVNRLHGLRNRVAHLEPLLNTDVLSYHRTTSRLLRAIEPQLGDWYAGTSRVPSVAAQRP
SIO_010081: EFE39_RS15480
subclass of: SO_0000673
so part of: EFE39_RS15480
location: 8754..9515
location: region:8754-9515:1
so has part: feature:8754-9515:1:exon

WP_079535040.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8754-9515:1:exon

EFE39_RS15485
type: Gene
subclass of: SO_0000704
RO_0002162: 33013
locus tag: EFE39_RS15485
old locus tag: EFE39_15450
so part of: sequence
location: 9885..10361
location: region:9885-10361:1
so has part: feature:9885-10361:1:exon
subclass of: SO_0000010

56887350
type: Gene
SIO_000068: ncbigene

position:9885:1
position: 9885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10361:1
position: 10361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9885-10361:1:exon

EFE39_RS15485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33013
locus tag: EFE39_RS15485
old locus tag: EFE39_15450
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLVFLATLPVTYVIANATGFLQKAPQFAVPAMMLPGLVVVMVGFLPSEANPRRVYLTVAALTIRYLLVGHLPIISLGAREPSRLERLSLRDRTLPAIAVVVNRVSQGARQMRTETRAVDFTGPVEPDVPAETFRVRQLGYEATAALLAGLTKKGPRHG
SIO_010081: EFE39_RS15485
subclass of: SO_0000673
so part of: EFE39_RS15485
location: 9885..10361
location: region:9885-10361:1
so has part: feature:9885-10361:1:exon

WP_157444684.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9885-10361:1:exon

EFE39_RS15490
type: Gene
subclass of: SO_0000704
RO_0002162: 33013
locus tag: EFE39_RS15490
old locus tag: EFE39_15455
so part of: sequence
location: 10354..12921
location: region:10354-12921:1
so has part: feature:10354-12921:1:exon
subclass of: SO_0000010

56887351
type: Gene
SIO_000068: ncbigene

position:10354:1
position: 10354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12921:1
position: 12921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10354-12921:1:exon

EFE39_RS15490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33013
locus tag: EFE39_RS15490
old locus tag: EFE39_15455
inference: COORDINATES: protein motif:HMM:NF024254.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MVRAIDYTRRLLGMGRGRSAPAPVYEVVADGLIVTQTDATAWFHVATNNTDLASHGEIDQELDSVVRVIAPRIAGKDCHLKLVWSTSSGAQYEESVHGLYRSGDQTRWVRDRAAAIDEDAMPERHVFLGIVIAARAPRSTSAVESAAGAAFGLGERQVRDAELAGYLHEVHKLGRRLRSGSRLTVTAASAESLSWLLGRSQFRRGGAVPRQGTIQGASLAQLTRGRVVPYADHLRIYDGHGEVAAYQAVLPITDFPIQVDVAQDQSQWLRMLSDITRPSEDGDDVPVTVEASVRFTVLTRKEARKKIKGAHELTKEQRRSAAQGMAGDAGSAIEESELVTDELLQEMRDDGLFLVQSHPRLIVTEGSYDDLMSAIDAVTGFYANAGIDVSPGDEEQRDLFMEALPGDRIRVDDLGHIQDGPGFFGSLFWGGSALPQDGFALGYVSGSTPSPFRFNLISFAENRKATTVALLGRSGVGKSTGLSMMCLDAAFADAWVTLIDPKGDLGGIVTVAQEYGLPAALLTLDGSQQSGALDLFLSSLSPDEAAIQVANQLILLAPPTLRAYADQVALQFAQDMLAAAQAAGEQPSTYRIIEALVASESDAAHALGRNLRATADTPVGKLLMGRAERGSGSVLRTTPGIWNIQLPATSDPPVDTPVAEWDIMHRLGVAVQRSVLNHSLHVAGNRQMTGMRKVIAMPEVHRILAMRDGASFLNQSARVGRANNTHLVLDSQDATGIAGHEGLVEQLVAVFGFQLQSNTQQDALATMLRLPTDEQNIASTRALIGSLSVSHASGEDIKGDSIAWIDTAGSGPARVQFDLPNDHIRQLLDTSPVYDGDSATPASDELITEEEVLQP
SIO_010081: EFE39_RS15490
subclass of: SO_0000673
so part of: EFE39_RS15490
location: 10354..12921
location: region:10354-12921:1
so has part: feature:10354-12921:1:exon

WP_079535027.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10354-12921:1:exon

EFE39_RS15495
type: Gene
subclass of: SO_0000704
RO_0002162: 33013
locus tag: EFE39_RS15495
old locus tag: EFE39_15465
so part of: sequence
location: 13298..15325
location: region:13298-15325:1
so has part: feature:13298-15325:1:exon
subclass of: SO_0000010

56887352
type: Gene
SIO_000068: ncbigene

position:13298:1
position: 13298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15325:1
position: 15325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13298-15325:1:exon

EFE39_RS15495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33013
locus tag: EFE39_RS15495
old locus tag: EFE39_15465
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRVAERLTLSTALVLSSLRRFLPSRRRVKLFLVTTLVLWALGSGGVLAANMAGAAQMHPTEDAACLQDRSCQPTKTMQPGELIPIRDMSAGGNKTLFESYDLLHWRIADDQEQAIVDGLNQAMNGVINALMFILVLVVYMSIGLAWWLFGATSVPGLSDAAADLISGASGGLLAWVFPTAVAVGAIVAYAQGRQAKGSWFGQIAWMVAAGALAFGLTTTPAIFTNGITHIRETGSDMVLNLSNQALTGDAQFPLPWNTVDYSVNTSKDAMLRKSGDAIWRDFVATPWCMTQFGSLEACAKYGPTMLAADPTNDDRHNVIKSTVYNTEGNGSPDAGKSSETGQWAKGDNWPVQLVIILIGLIAAVVFCVLLIVLGFSALSGVILTTMLLIAGVFFAALWVIPGRPRQWGVAWAEALVGSIAITLLSLLTFSVVIVTTAAIFAASVSSGWFISLGTVILMLFTAFYFRKQLLAIVGSNGSGIGRTFLAGAALTSMATRGLNRLRSRGSSSGLNTSRRPTAGNPLTRGIARARDTAGRIDRGMQKGSAVRMRSLQQQLGRQGGGSTAPRRGGESSSTPSLRPGPTFSPTDRGTPTRELTTRAYTARTGKQPAPAARASRTPGMRAAAGRQQRVAQQTRRPSFAPTQQRPGQQPPVTPRTPARPVRPVVDRRPRRDGEA
SIO_010081: EFE39_RS15495
subclass of: SO_0000673
so part of: EFE39_RS15495
location: 13298..15325
location: region:13298-15325:1
so has part: feature:13298-15325:1:exon

WP_079535025.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13298-15325:1:exon

EFE39_RS15500
type: Gene
subclass of: SO_0000704
RO_0002162: 33013
locus tag: EFE39_RS15500
old locus tag: EFE39_15470
so part of: sequence
location: 15325..16005
location: region:15325-16005:1
so has part: feature:15325-16005:1:exon
subclass of: SO_0000010

56887353
type: Gene
SIO_000068: ncbigene

position:16005:1
position: 16005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15325-16005:1:exon

EFE39_RS15500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33013
locus tag: EFE39_RS15500
old locus tag: EFE39_15470
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPDILDADVPDPVQSRRQQWRARRAVKKAARRAIVAEQRIREQQRRRRAFGQDRSPWVLGIGAVLVFGGIAVVGALVPAEQDAPSSAPALHAAPTPTSAPTASSAAPPPTAAAPALEPATVGANWAVAYFSGQDWQSLTAPAAREALAAQRGQFFDGTYLTGDRVNVAEWTWRDESTSSPQWEGTIDVLLQPGRQTRLSATFRMTIDTTGATPVVTRVETVFYGEA
SIO_010081: EFE39_RS15500
subclass of: SO_0000673
so part of: EFE39_RS15500
location: 15325..16005
location: region:15325-16005:1
so has part: feature:15325-16005:1:exon

WP_079535024.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15325-16005:1:exon

EFE39_RS15505
type: Gene
subclass of: SO_0000704
RO_0002162: 33013
locus tag: EFE39_RS15505
old locus tag: EFE39_15475
so part of: sequence
location: 16011..17174
location: region:16011-17174:1
so has part: feature:16011-17174:1:exon
subclass of: SO_0000010

56887354
type: Gene
SIO_000068: ncbigene

position:16011:1
position: 16011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17174:1
position: 17174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16011-17174:1:exon

EFE39_RS15505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33013
locus tag: EFE39_RS15505
old locus tag: EFE39_15475
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005053966.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSERSALENAARIAAAARVAVAWKLGIPIAIVALLLGSLIMLPVIVVSSITSGNPATGTQACSTGGATLAGATSTIAGYSGEQLTNAAAIIDAGNSLGVPSYGVNVAVMTAMGESGLRVLTYGDAAGPDSRGLFQQRDSWGSESDRLDPSTSARLFYERLVKVPGWQQMQPTDAAHAVQINADPNYYTRFWTAAQQVVSGLTGGSGGGCQNASTGTVSGNGQQLAAAIMDATAQGKITWLTPAYHDQVQAIADPSNWDGDTFTGSCAIDSRILQVILTAQQTFLTIGVSDLNRRCTDSTPGAGVYSMHWQGKAVDFYAFNGTATTGRDQNAVALISKLDAISNPLAAVGQSNCGTTPNLTVMHTFPDTCNHLHYQLGPGSEPLNLTT
SIO_010081: EFE39_RS15505
subclass of: SO_0000673
so part of: EFE39_RS15505
location: 16011..17174
location: region:16011-17174:1
so has part: feature:16011-17174:1:exon

WP_128517016.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16011-17174:1:exon

EFE39_RS15510
type: Gene
subclass of: SO_0000704
RO_0002162: 33013
locus tag: EFE39_RS15510
old locus tag: EFE39_15480
so part of: sequence
location: 17194..18540
location: region:17194-18540:1
so has part: feature:17194-18540:1:exon
subclass of: SO_0000010

56887355
type: Gene
SIO_000068: ncbigene

position:17194:1
position: 17194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18540:1
position: 18540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17194-18540:1:exon

EFE39_RS15510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33013
locus tag: EFE39_RS15510
old locus tag: EFE39_15480
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTTAPAPAPEVTVTAGADGTGTLTIDGTARELRGDSLQAVVGAALDAIVQELVKPAGYPVLITANDPSGSYRLLVDVDGTVTAASDEPAPPTPSTEATQDEDEPRPADAGAAAGNVERPAELITEGEPGRAPQTRREARLSARDFVQSQPTPKAAPAREGWRGGANRAAFGALRLAPGTLELTRREWRSSVQRGIAGHKTIVVIGEKGGVSKTTTTYLLSAVLGRVRGGTILAWDNNEYNGSLGVRAYEAHHDHTARDLLGHIDTFTDQAHQADLVNFVRPQRDNKFDVLASQNVVGNTRVIEADEFRKLYTALTRFYRLIIVDTGNNSEAGTWRAAVEAADQIVLTSLVKKDSAVKIASLADKLDATGFGDKLANAVTLISHNSPINYPDLEQRLHDHMAQRTRQVVTVPFDKALDDGGGIEYDALTAASKEAWLAATAAVIDGLR
SIO_010081: EFE39_RS15510
subclass of: SO_0000673
so part of: EFE39_RS15510
location: 17194..18540
location: region:17194-18540:1
so has part: feature:17194-18540:1:exon

WP_079535023.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17194-18540:1:exon

EFE39_RS15515
type: Gene
subclass of: SO_0000704
RO_0002162: 33013
locus tag: EFE39_RS15515
old locus tag: EFE39_15485
so part of: sequence
location: 18549..19163
location: region:18549-19163:1
so has part: feature:18549-19163:1:exon
subclass of: SO_0000010

56887356
type: Gene
SIO_000068: ncbigene

position:18549:1
position: 18549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19163:1
position: 19163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18549-19163:1:exon

EFE39_RS15515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33013
locus tag: EFE39_RS15515
old locus tag: EFE39_15485
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNVRTPAWLVRYLHDPIALATTHRIAGRTAIVAVPTFVASAVVASFSPSLSWIPELVFLLGAAAVVVRLTLNVLRWWRRGPVRWGIFAPKARRAYMRDIWNTVAHDALDRDVWAVRVVAVTSIRARGCRAIVEHPDGRRQDAWFWHVRPRRGHVYLVRATGAATGIRDQHRVMYVGSDTTGPGIIYRIPRAAWRQRTVRIVRFQ
SIO_010081: EFE39_RS15515
subclass of: SO_0000673
so part of: EFE39_RS15515
location: 18549..19163
location: region:18549-19163:1
so has part: feature:18549-19163:1:exon

WP_079535022.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18549-19163:1:exon

EFE39_RS15520
type: Gene
subclass of: SO_0000704
RO_0002162: 33013
locus tag: EFE39_RS15520
old locus tag: EFE39_15490
so part of: sequence
location: 19160..19609
location: region:19160-19609:1
so has part: feature:19160-19609:1:exon
subclass of: SO_0000010

56887357
type: Gene
SIO_000068: ncbigene

position:19160:1
position: 19160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19609:1
position: 19609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19160-19609:1:exon

EFE39_RS15520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33013
locus tag: EFE39_RS15520
old locus tag: EFE39_15490
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRPRTPTAALVQQLVSDRNDFHCPHCPPIERILMSMYQPRVRGGMHLRATWASRLEQLARAFVALFVAAVLLPVPVFVAIKLGGALAAGSTYDAGVLGASAVFVLSSVVIGIAVRAGAPALVAAFRPLEPIYDPVAEGAAVATNPRQFY
SIO_010081: EFE39_RS15520
subclass of: SO_0000673
so part of: EFE39_RS15520
location: 19160..19609
location: region:19160-19609:1
so has part: feature:19160-19609:1:exon

WP_128517015.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19160-19609:1:exon

EFE39_RS15525
type: Gene
subclass of: SO_0000704
RO_0002162: 33013
locus tag: EFE39_RS15525
old locus tag: EFE39_15495
so part of: sequence
location: 19640..20035
location: region:19640-20035:1
so has part: feature:19640-20035:1:exon
subclass of: SO_0000010

56887358
type: Gene
SIO_000068: ncbigene

position:19640:1
position: 19640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20035:1
position: 20035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19640-20035:1:exon

EFE39_RS15525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 33013
locus tag: EFE39_RS15525
old locus tag: EFE39_15495
inference: COORDINATES: protein motif:HMM:NF012651.2
GO function: GO:0003697 - single-stranded DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: single-stranded DNA-binding protein
translation: MAQRTIWGHLAAPPVVQDAGRAKVTRFRVIENTGSYRAGKWVEDETPTTHLVEAWFEVGVTAAALNEGDGVIIVGKEHTEKWMKNDTPQYNRVLKAERFGIVPKAPVKEPEPAPEPEPVSVWERTAAEPPQ
SIO_010081: EFE39_RS15525
subclass of: SO_0000673
so part of: EFE39_RS15525
location: 19640..20035
location: region:19640-20035:1
so has part: feature:19640-20035:1:exon

WP_079535020.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19640-20035:1:exon