Acaryochloris marina MBIC11017 plasmid pREB8, complete sequence.
Bacteria; Cyanobacteria; Synechococcales; Acaryochloridaceae; Acaryochloris.
Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina
Submitted (25-SEP-2007) Translational Genomics Research Institute, 13208 E Shea Blvd, Scottsdale, AZ 85004, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP000845.1.\nSource bacteria from Marine Biotechnology Institute Culture\nCollection, Marine Biotechnology Institute, 3-75-1 Heita, Kamaishi,\nIwate 026-0001, Japan.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 14:47:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,630\nCDSs (total) :: 7,546\nGenes (coding) :: 7,302\nCDSs (with protein) :: 7,302\nGenes (RNA) :: 84\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 4\nPseudo Genes (total) :: 244\nCDSs (without protein) :: 244\nPseudo Genes (ambiguous residues) :: 0 of 244\nPseudo Genes (frameshifted) :: 73 of 244\nPseudo Genes (incomplete) :: 188 of 244\nPseudo Genes (internal stop) :: 55 of 244\nPseudo Genes (multiple problems) :: 65 of 244\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF033546.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS21-like element ISAcma26 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012168214.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
IS21-like element ISAcma26 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_012160803.1
ISL3-like element ISAcma10 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012168420.1
COORDINATES: protein motif:HMM:NF024986.2
COORDINATES: protein motif:HMM:NF037161.2
COORDINATES: similar to AA sequence:RefSeq:WP_012166277.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168424.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168349.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012166282.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167101.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012167891.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167890.1
COORDINATES: similar to AA sequence:RefSeq:WP_007307472.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007303097.1
COORDINATES: similar to AA sequence:RefSeq:WP_015933337.1
COORDINATES: similar to AA sequence:RefSeq:WP_011153718.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167934.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168032.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167091.1
COORDINATES: similar to AA sequence:RefSeq:WP_010480683.1
COORDINATES: protein motif:HMM:NF024835.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012167937.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167938.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168453.1
GO:0003824 - catalytic activity [Evidence IEA]
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012167085.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167084.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168457.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167943.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167082.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166309.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166310.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168465.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168466.1
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012166315.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167230.1
COORDINATES: similar to AA sequence:RefSeq:WP_012161927.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168469.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211886.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010479272.1
COORDINATES: similar to AA sequence:RefSeq:WP_012165532.1
ferric reductase-like transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009545606.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168258.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168475.1
GO:0005515 - protein binding [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012168260.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168477.1
COORDINATES: similar to AA sequence:RefSeq:WP_010470288.1
COORDINATES: similar to AA sequence:RefSeq:WP_012929343.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014511109.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF025001.2
COORDINATES: similar to AA sequence:RefSeq:WP_012161137.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168293.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012163196.1
COORDINATES: protein motif:HMM:NF015038.2
COORDINATES: similar to AA sequence:RefSeq:WP_012168489.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168078.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168500.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_012168502.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168307.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168308.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168311.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168312.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168315.1
COORDINATES: protein motif:HMM:NF012378.2
COORDINATES: protein motif:HMM:NF023568.2
COORDINATES: similar to AA sequence:RefSeq:WP_012168323.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168324.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168336.1
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012168337.1
COORDINATES: similar to AA sequence:RefSeq:WP_018607917.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168036.1
COORDINATES: similar to AA sequence:RefSeq:WP_010469473.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168523.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168340.1
COORDINATES: protein motif:HMM:NF020440.2
COORDINATES: similar to AA sequence:RefSeq:WP_012163407.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168527.1
GO:0004803 - transposase activity [Evidence IEA]
IS5-like element ISAcma43 family transposase
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: similar to AA sequence:RefSeq:WP_010471925.1