Acaryochloris marina MBIC11017 plasmid pREB7, complete sequence.
Bacteria; Cyanobacteria; Synechococcales; Acaryochloridaceae; Acaryochloris.
Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina
Submitted (25-SEP-2007) Translational Genomics Research Institute, 13208 E Shea Blvd, Scottsdale, AZ 85004, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP000844.1.\nSource bacteria from Marine Biotechnology Institute Culture\nCollection, Marine Biotechnology Institute, 3-75-1 Heita, Kamaishi,\nIwate 026-0001, Japan.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 14:47:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,630\nCDSs (total) :: 7,546\nGenes (coding) :: 7,302\nCDSs (with protein) :: 7,302\nGenes (RNA) :: 84\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 4\nPseudo Genes (total) :: 244\nCDSs (without protein) :: 244\nPseudo Genes (ambiguous residues) :: 0 of 244\nPseudo Genes (frameshifted) :: 73 of 244\nPseudo Genes (incomplete) :: 188 of 244\nPseudo Genes (internal stop) :: 55 of 244\nPseudo Genes (multiple problems) :: 65 of 244\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012160919.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
IS701-like element ISAcma8 family transposase
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012168253.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167215.1
inverse autotransporter beta-barrel domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017318034.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168475.1
GO:0005515 - protein binding [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012168476.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168477.1
COORDINATES: protein motif:HMM:NF018028.2
COORDINATES: similar to AA sequence:RefSeq:WP_012628503.1
COORDINATES: protein motif:HMM:NF039783.1
trypsin-like peptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017748255.1
COORDINATES: protein motif:HMM:NF041121.1
formylglycine-generating enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012167229.1
COORDINATES: similar to AA sequence:RefSeq:WP_006513250.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166988.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168178.1
double-stranded RNA binding motif domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009547726.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166155.1
COORDINATES: protein motif:HMM:NF012318.2
COORDINATES: similar to AA sequence:RefSeq:WP_007365655.1
COORDINATES: similar to AA sequence:RefSeq:WP_013320295.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168287.1
GO:0004803 - transposase activity [Evidence IEA]
IS6-like element ISAcma1 family transposase
COORDINATES: protein motif:HMM:NF024639.2
COORDINATES: similar to AA sequence:RefSeq:WP_015193342.1
COORDINATES: similar to AA sequence:RefSeq:WP_006512421.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00442
guanidine-I (ykkC/yxkD leader) riboswitch; Guanidine-I riboswitches control genes whose products are involved in modification or pumping out guanidine as a toxic compound from bacteria; This is class of guanidine riboswitches is based on the ykkC/yxkD leader; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_015132681.1
COORDINATES: similar to AA sequence:RefSeq:WP_010482082.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166591.1
COORDINATES: similar to AA sequence:RefSeq:WP_010474488.1
COORDINATES: similar to AA sequence:RefSeq:WP_010468237.1
COORDINATES: protein motif:HMM:NF013125.2
COORDINATES: similar to AA sequence:RefSeq:WP_012168498.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168500.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_012167868.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012168502.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168503.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168504.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168505.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168506.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168507.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168509.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168322.1
COORDINATES: protein motif:HMM:NF013853.2
COORDINATES: similar to AA sequence:RefSeq:WP_012162082.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167892.1
GO:0008233 - peptidase activity [Evidence IEA]
D-alanyl-D-alanine carboxypeptidase family protein
COORDINATES: protein motif:HMM:NF013676.2
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008692045.1
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF012334.2
COORDINATES: similar to AA sequence:RefSeq:WP_012160900.1
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024183.2
COORDINATES: similar to AA sequence:RefSeq:WP_015133411.1
COORDINATES: similar to AA sequence:RefSeq:WP_006510060.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018147548.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012168517.1
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012168518.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168523.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168524.1
COORDINATES: similar to AA sequence:RefSeq:WP_019502057.1
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012168420.1
COORDINATES: protein motif:HMM:TIGR02136.1
GO:0042301 - phosphate ion binding [Evidence IEA]
phosphate ABC transporter substrate-binding protein PstS family protein
COORDINATES: protein motif:HMM:NF037161.2
COORDINATES: similar to AA sequence:RefSeq:WP_012168424.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168349.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166282.1
COORDINATES: similar to AA sequence:RefSeq:WP_010481628.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168353.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166284.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166401.1
COORDINATES: similar to AA sequence:RefSeq:WP_010480145.1
photosystem II complex extrinsic protein PsbU
COORDINATES: similar to AA sequence:RefSeq:WP_010470577.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168032.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012168363.1
COORDINATES: protein motif:HMM:NF033546.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS21-like element ISAcma26 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012168214.1
IS21-like element ISAcma26 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_012168367.1
IS4-like element ISAcma44 family transposase
COORDINATES: protein motif:HMM:NF012888.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611323.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007336478.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012162687.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_012167090.1
COORDINATES: similar to AA sequence:RefSeq:WP_010480707.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476156.1
COORDINATES: similar to AA sequence:RefSeq:WP_011611488.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166843.1
COORDINATES: similar to AA sequence:RefSeq:WP_010480681.1
COORDINATES: protein motif:HMM:NF024835.2
COORDINATES: similar to AA sequence:RefSeq:WP_012166299.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167938.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168453.1
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012168457.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167943.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167082.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167080.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167079.1
COORDINATES: similar to AA sequence:RefSeq:WP_015210857.1
membrane protein insertion efficiency factor YidD
COORDINATES: similar to AA sequence:RefSeq:WP_012168231.1
COORDINATES: similar to AA sequence:RefSeq:WP_010480028.1
COORDINATES: similar to AA sequence:RefSeq:WP_010478577.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012167182.1
COORDINATES: protein motif:HMM:NF019500.2
COORDINATES: similar to AA sequence:RefSeq:WP_013325582.1
COORDINATES: similar to AA sequence:RefSeq:WP_006458698.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024298.2
COORDINATES: similar to AA sequence:RefSeq:WP_010469678.1
COORDINATES: similar to AA sequence:RefSeq:WP_012161821.1