Acaryochloris marina MBIC11017 plasmid pREB6, complete sequence.
Bacteria; Cyanobacteria; Synechococcales; Acaryochloridaceae; Acaryochloris.
Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina
Submitted (25-SEP-2007) Translational Genomics Research Institute, 13208 E Shea Blvd, Scottsdale, AZ 85004, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP000843.1.\nSource bacteria from Marine Biotechnology Institute Culture\nCollection, Marine Biotechnology Institute, 3-75-1 Heita, Kamaishi,\nIwate 026-0001, Japan.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 14:47:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,630\nCDSs (total) :: 7,546\nGenes (coding) :: 7,302\nCDSs (with protein) :: 7,302\nGenes (RNA) :: 84\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 4\nPseudo Genes (total) :: 244\nCDSs (without protein) :: 244\nPseudo Genes (ambiguous residues) :: 0 of 244\nPseudo Genes (frameshifted) :: 73 of 244\nPseudo Genes (incomplete) :: 188 of 244\nPseudo Genes (internal stop) :: 55 of 244\nPseudo Genes (multiple problems) :: 65 of 244\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010470070.1
GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012167412.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
IS5-like element ISAcma45 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_009787766.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
group II intron reverse transcriptase/maturase
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF033527.1
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010481945.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166834.1
COORDINATES: similar to AA sequence:RefSeq:WP_015145347.1
COORDINATES: similar to AA sequence:RefSeq:WP_010481970.1
COORDINATES: similar to AA sequence:RefSeq:WP_010481968.1
COORDINATES: protein motif:HMM:NF020229.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012167763.1
COORDINATES: protein motif:HMM:NF025577.2
COORDINATES: similar to AA sequence:RefSeq:WP_010482090.1
COORDINATES: similar to AA sequence:RefSeq:WP_009631382.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010478808.1
COORDINATES: similar to AA sequence:RefSeq:WP_010481889.1
COORDINATES: similar to AA sequence:RefSeq:WP_010481886.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166813.1
COORDINATES: similar to AA sequence:RefSeq:WP_010478803.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012167749.1
COORDINATES: similar to AA sequence:RefSeq:WP_016864124.1
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010478897.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168322.1
COORDINATES: similar to AA sequence:RefSeq:WP_016866500.1
COORDINATES: similar to AA sequence:RefSeq:WP_007308257.1
GO:0003871 - 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0008652 - amino acid biosynthetic process [Evidence IEA]; GO:0009086 - methionine biosynthetic process [Evidence IEA]
5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011480788.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_016346283.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_009523827.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_006623104.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167032.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167031.1
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012167030.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167029.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_009555255.1
COORDINATES: similar to AA sequence:RefSeq:WP_012160980.1
GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0032508 - DNA duplex unwinding [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012166026.1
protein adenylyltransferase SelO family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012165245.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611717.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS630-like element ISAcma31 family transposase
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007305186.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167025.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168138.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011042639.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167021.1
COORDINATES: similar to AA sequence:RefSeq:WP_010477400.1
COORDINATES: similar to AA sequence:RefSeq:WP_010474090.1
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010474092.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167016.1
COORDINATES: similar to AA sequence:RefSeq:WP_010475808.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0003674 - molecular_function [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009819623.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009457046.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168149.1
GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010471496.1
COORDINATES: similar to AA sequence:RefSeq:WP_012162669.1
COORDINATES: similar to AA sequence:RefSeq:WP_010479413.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166254.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166638.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012160803.1
ISL3-like element ISAcma10 family transposase
COORDINATES: protein motif:HMM:NF025619.2
COORDINATES: similar to AA sequence:RefSeq:WP_006633949.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476976.1
COORDINATES: similar to AA sequence:RefSeq:WP_010479978.1
COORDINATES: similar to AA sequence:RefSeq:WP_009546405.1
COORDINATES: similar to AA sequence:RefSeq:WP_012162925.1
COORDINATES: similar to AA sequence:RefSeq:WP_010472540.1
COORDINATES: similar to AA sequence:RefSeq:WP_010478875.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167270.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167859.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167858.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168176.1
COORDINATES: similar to AA sequence:RefSeq:WP_010479876.1
COORDINATES: protein motif:HMM:NF016363.2
COORDINATES: similar to AA sequence:RefSeq:WP_012168178.1
double-stranded RNA binding motif domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012167851.1
COORDINATES: protein motif:HMM:NF012651.2
COORDINATES: similar to AA sequence:RefSeq:WP_012166560.1
COORDINATES: protein motif:HMM:NF012296.2
COORDINATES: protein motif:HMM:NF017658.2
filamentous hemagglutinin N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF015803.2
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: protein motif:HMM:NF024180.2
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: protein motif:HMM:NF017539.2
COORDINATES: similar to AA sequence:RefSeq:WP_012166550.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166547.1
COORDINATES: similar to AA sequence:RefSeq:WP_010481550.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167841.1
COORDINATES: protein motif:HMM:NF014044.2
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: protein motif:HMM:NF014581.2
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611618.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033546.1
IS21-like element ISAcma26 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012168214.1
IS21-like element ISAcma26 family helper ATPase IstB
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012168016.1
COORDINATES: protein motif:HMM:NF020332.2
COORDINATES: similar to AA sequence:RefSeq:WP_010481632.1
COORDINATES: similar to AA sequence:RefSeq:WP_006509764.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168399.1
COORDINATES: similar to AA sequence:RefSeq:WP_015210857.1
membrane protein insertion efficiency factor YidD
COORDINATES: similar to AA sequence:RefSeq:WP_012166282.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166859.1
COORDINATES: similar to AA sequence:RefSeq:WP_010481621.1
COORDINATES: similar to AA sequence:RefSeq:WP_010478513.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_012168240.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168241.1
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: similar to AA sequence:RefSeq:WP_012630306.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167566.1
COORDINATES: similar to AA sequence:RefSeq:WP_010480351.1
nuclease-related domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016861467.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF017843.2