Acaryochloris marina MBIC11017 plasmid pREB5, complete sequence.
Bacteria; Cyanobacteria; Synechococcales; Acaryochloridaceae; Acaryochloris.
Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina
Submitted (25-SEP-2007) Translational Genomics Research Institute, 13208 E Shea Blvd, Scottsdale, AZ 85004, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP000842.1.\nSource bacteria from Marine Biotechnology Institute Culture\nCollection, Marine Biotechnology Institute, 3-75-1 Heita, Kamaishi,\nIwate 026-0001, Japan.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 14:47:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,630\nCDSs (total) :: 7,546\nGenes (coding) :: 7,302\nCDSs (with protein) :: 7,302\nGenes (RNA) :: 84\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 4\nPseudo Genes (total) :: 244\nCDSs (without protein) :: 244\nPseudo Genes (ambiguous residues) :: 0 of 244\nPseudo Genes (frameshifted) :: 73 of 244\nPseudo Genes (incomplete) :: 188 of 244\nPseudo Genes (internal stop) :: 55 of 244\nPseudo Genes (multiple problems) :: 65 of 244\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012168498.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012167258.1
COORDINATES: protein motif:HMM:NF017539.2
COORDINATES: similar to AA sequence:RefSeq:WP_012168073.1
IS1182-like element ISAcma46 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012160769.1
GO:0004803 - transposase activity [Evidence IEA]
IS5-like element ISAcma6 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_019503208.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167187.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF013672.2
COORDINATES: protein motif:HMM:NF024863.2
GDSL-type esterase/lipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006919867.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012167104.1
COORDINATES: protein motif:HMM:NF024252.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012167937.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167940.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166305.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167943.1
COORDINATES: protein motif:HMM:NF016283.2
COORDINATES: similar to AA sequence:RefSeq:WP_012166292.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF017658.2
filamentous hemagglutinin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012160833.1
IS630-like element ISAcma14 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012167916.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168038.1
COORDINATES: similar to AA sequence:RefSeq:WP_019502561.1
COORDINATES: similar to AA sequence:RefSeq:WP_008178175.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012168032.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168363.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168217.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168218.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168019.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166355.1
COORDINATES: protein motif:HMM:TIGR02686.1
COORDINATES: protein motif:HMM:NF021897.2
TraM recognition domain-containing protein
COORDINATES: protein motif:HMM:NF033546.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS21-like element ISAcma26 family transposase
COORDINATES: protein motif:HMM:NF013828.2
COORDINATES: similar to AA sequence:RefSeq:WP_012160803.1
ISL3-like element ISAcma10 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012168214.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168485.1
COORDINATES: similar to AA sequence:RefSeq:WP_010482719.1
winged helix-turn-helix domain-containing protein
glycosyl transferase, group 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007311488.1
COORDINATES: protein motif:HMM:NF016908.2
COORDINATES: similar to AA sequence:RefSeq:WP_006458453.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010480604.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: protein motif:HMM:NF024206.2
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012308507.1
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_005364550.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167988.1
GO:0004540 - ribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009630630.1
COORDINATES: similar to AA sequence:RefSeq:WP_008275706.1
COORDINATES: protein motif:HMM:NF018717.2
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: similar to AA sequence:RefSeq:WP_008286824.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010476976.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167207.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166640.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: protein motif:HMM:NF019540.2
type II toxin-antitoxin system HicA family toxin
COORDINATES: protein motif:HMM:NF037016.2
COORDINATES: similar to AA sequence:RefSeq:WP_010468446.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168470.1
COORDINATES: protein motif:HMM:NF017874.2
COORDINATES: similar to AA sequence:RefSeq:WP_012163885.1
neutral/alkaline non-lysosomal ceramidase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019502123.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012166395.1
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: similar to AA sequence:RefSeq:WP_012167960.1
winged helix DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012167274.1
GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012167957.1
COORDINATES: similar to AA sequence:RefSeq:WP_010480026.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476092.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167179.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167227.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167178.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167177.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167949.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167079.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166309.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167944.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168457.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168456.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167085.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167938.1
COORDINATES: protein motif:HMM:NF019493.2
COORDINATES: similar to AA sequence:RefSeq:WP_012167090.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167934.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167093.1
COORDINATES: protein motif:HMM:NF040105.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012167098.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167927.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476149.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168240.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166620.1
COORDINATES: similar to AA sequence:RefSeq:WP_010477592.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168040.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166289.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167429.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167431.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167355.1
IS21-like element ISAcma50 family helper ATPase IstB
IS21-like element ISAcma50 family transposase
COORDINATES: protein motif:HMM:NF012521.2
COORDINATES: protein motif:HMM:NF024986.2
COORDINATES: similar to AA sequence:RefSeq:WP_012240426.1
COORDINATES: similar to AA sequence:RefSeq:WP_007988196.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012167805.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167806.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167813.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167812.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167816.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167817.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167819.1
COORDINATES: similar to AA sequence:RefSeq:WP_015139243.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167824.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166851.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167827.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167828.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167831.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167832.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167837.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167838.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167839.1
COORDINATES: similar to AA sequence:RefSeq:WP_012161494.1
COORDINATES: similar to AA sequence:RefSeq:WP_015113279.1
COORDINATES: similar to AA sequence:RefSeq:WP_010479302.1
COORDINATES: similar to AA sequence:RefSeq:WP_015939454.1
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012168305.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167161.1