Acaryochloris marina MBIC11017 plasmid pREB4, complete sequence.
Bacteria; Cyanobacteria; Synechococcales; Acaryochloridaceae; Acaryochloris.
Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina
Submitted (25-SEP-2007) Translational Genomics Research Institute, 13208 E Shea Blvd, Scottsdale, AZ 85004, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP000841.1.\nSource bacteria from Marine Biotechnology Institute Culture\nCollection, Marine Biotechnology Institute, 3-75-1 Heita, Kamaishi,\nIwate 026-0001, Japan.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/19/2022 14:47:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,630\nCDSs (total) :: 7,546\nGenes (coding) :: 7,302\nCDSs (with protein) :: 7,302\nGenes (RNA) :: 84\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 4\nPseudo Genes (total) :: 244\nCDSs (without protein) :: 244\nPseudo Genes (ambiguous residues) :: 0 of 244\nPseudo Genes (frameshifted) :: 73 of 244\nPseudo Genes (incomplete) :: 188 of 244\nPseudo Genes (internal stop) :: 55 of 244\nPseudo Genes (multiple problems) :: 65 of 244\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_017318336.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012265.2
double-stranded RNA binding motif domain-containing protein
COORDINATES: protein motif:HMM:NF012975.2
GO:0004540 - ribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
ribonuclease catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012167850.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166574.1
COORDINATES: protein motif:HMM:NF016363.2
COORDINATES: similar to AA sequence:RefSeq:WP_012168174.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167858.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168176.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010479876.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168178.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012167851.1
COORDINATES: similar to AA sequence:RefSeq:WP_010479456.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167849.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025054.2
COORDINATES: similar to AA sequence:RefSeq:WP_012160919.1
IS701-like element ISAcma8 family transposase
COORDINATES: protein motif:HMM:NF040406.1
COORDINATES: similar to AA sequence:RefSeq:WP_010479461.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476916.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012167317.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168197.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_012167877.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167878.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167881.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167882.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167885.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167886.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167890.1
COORDINATES: similar to AA sequence:RefSeq:WP_015111954.1
COORDINATES: similar to AA sequence:RefSeq:WP_016516900.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167892.1
COORDINATES: similar to AA sequence:RefSeq:WP_012162028.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167894.1
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012167895.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612304.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS21-like element ISAcma50 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012167355.1
IS21-like element ISAcma50 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_012167896.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167899.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167901.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167902.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167903.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167904.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_012166116.1
IS1-like element ISAcma4 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012166536.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167099.1
COORDINATES: protein motif:HMM:NF013691.2
COORDINATES: protein motif:HMM:NF024816.2
COORDINATES: similar to AA sequence:RefSeq:WP_015158955.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012166965.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168240.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168241.1
COORDINATES: similar to AA sequence:RefSeq:WP_010473113.1
COORDINATES: protein motif:HMM:NF024740.2
COORDINATES: similar to AA sequence:RefSeq:WP_010481935.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166851.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167590.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF022613.2
COORDINATES: similar to AA sequence:RefSeq:WP_010471751.1
COORDINATES: similar to AA sequence:RefSeq:WP_008276778.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012167768.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010478846.1
COORDINATES: similar to AA sequence:RefSeq:WP_010478845.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010481945.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166522.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167559.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166954.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166953.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166952.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166951.1
COORDINATES: similar to AA sequence:RefSeq:WP_010481900.1
COORDINATES: similar to AA sequence:RefSeq:WP_010482094.1
phosphoadenosine phosphosulfate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_012166814.1
COORDINATES: similar to AA sequence:RefSeq:WP_010481884.1
COORDINATES: similar to AA sequence:RefSeq:WP_010478803.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010481602.1
COORDINATES: similar to AA sequence:RefSeq:WP_010482423.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167535.1
COORDINATES: similar to AA sequence:RefSeq:WP_006457887.1
COORDINATES: similar to AA sequence:RefSeq:WP_006512699.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166804.1
COORDINATES: similar to AA sequence:RefSeq:WP_012160927.1
COORDINATES: similar to AA sequence:RefSeq:WP_010478899.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010478900.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012168287.1
GO:0004803 - transposase activity [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010478903.1
photosystem II complex extrinsic protein PsbU
COORDINATES: similar to AA sequence:RefSeq:WP_010478904.1
COORDINATES: similar to AA sequence:RefSeq:WP_010478906.1
dihydroorotate dehydrogenase-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_010478910.1
COORDINATES: similar to AA sequence:RefSeq:WP_010478912.1
GO:0016530 - metallochaperone activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015142183.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167729.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017325588.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167727.1
COORDINATES: similar to AA sequence:RefSeq:WP_010478924.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010478926.1
COORDINATES: similar to AA sequence:RefSeq:WP_010478928.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167724.1
hydrogenase expression/formation protein HypE
COORDINATES: similar to AA sequence:RefSeq:WP_012167722.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008986 - pyruvate, water dikinase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]; GO:0006090 - pyruvate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010476600.1
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010476598.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476596.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476594.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476593.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476591.1
GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]
GO:0015078 - proton transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010476590.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167717.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167716.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476587.1
GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010476586.1
COORDINATES: similar to AA sequence:RefSeq:WP_015119432.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476581.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476580.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476579.1
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010476578.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167709.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476575.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476573.1
bidirectional hydrogenase complex protein HoxE
COORDINATES: similar to AA sequence:RefSeq:WP_010476571.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoF
COORDINATES: similar to AA sequence:RefSeq:WP_076611790.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012167704.1
amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012167703.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476567.1
bidirectional hydrogenase complex protein HoxU
COORDINATES: similar to AA sequence:RefSeq:WP_016874929.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476565.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167700.1
COORDINATES: similar to AA sequence:RefSeq:WP_006512906.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167698.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476559.1
HypC/HybG/HupF family hydrogenase formation chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_010476558.1
GO:0003998 - acylphosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012167695.1
COORDINATES: similar to AA sequence:RefSeq:WP_017320335.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476554.1
GO:0016530 - metallochaperone activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
hydrogenase nickel incorporation protein HypB
COORDINATES: similar to AA sequence:RefSeq:WP_010476553.1
GO:0008901 - ferredoxin hydrogenase activity [Evidence IEA]
hydrogenase maturation nickel metallochaperone HypA
COORDINATES: similar to AA sequence:RefSeq:WP_010476551.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010476550.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476549.1
geranylgeranylglycerol-phosphate geranylgeranyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012167690.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476547.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012167687.1
glycogen/starch/alpha-glucan phosphorylase
COORDINATES: similar to AA sequence:RefSeq:WP_012167686.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476543.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476541.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476540.1
medium chain dehydrogenase/reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010476539.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167682.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010476537.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020440.2
COORDINATES: similar to AA sequence:RefSeq:WP_012167679.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476531.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476529.1
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611269.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010476474.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012167673.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012166302.1
COORDINATES: protein motif:HMM:NF025079.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612237.1
COORDINATES: protein motif:HMM:NF013676.2
COORDINATES: protein motif:HMM:NF033546.1
IS21-like element ISAcma26 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012168214.1
IS21-like element ISAcma26 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_012166753.1
COORDINATES: similar to AA sequence:RefSeq:WP_010471144.1
COORDINATES: similar to AA sequence:RefSeq:WP_010471142.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167661.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012167660.1
COORDINATES: similar to AA sequence:RefSeq:WP_010482115.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611721.1
IS630-like element ISAcma30 family transposase
COORDINATES: protein motif:HMM:NF020011.2
COORDINATES: similar to AA sequence:RefSeq:WP_010482113.1
COORDINATES: similar to AA sequence:RefSeq:WP_010481685.1
endonuclease/exonuclease/phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015151167.1
GO:0008808 - cardiolipin synthase activity [Evidence IEA]
GO:0032049 - cardiolipin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012167653.1
COORDINATES: similar to AA sequence:RefSeq:WP_010481691.1
COORDINATES: similar to AA sequence:RefSeq:WP_016875402.1
lysophospholipid acyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009546353.1
COORDINATES: similar to AA sequence:RefSeq:WP_009453765.1
COORDINATES: similar to AA sequence:RefSeq:WP_009453764.1
COORDINATES: similar to AA sequence:RefSeq:WP_009453766.1
COORDINATES: similar to AA sequence:RefSeq:WP_011318594.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010479434.1
COORDINATES: similar to AA sequence:RefSeq:WP_010479431.1
COORDINATES: similar to AA sequence:RefSeq:WP_010479429.1
GO:0005506 - iron ion binding [Evidence IEA]; GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
GO:0022900 - electron transport chain [Evidence IEA]
pyruvate:ferredoxin (flavodoxin) oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012166643.1
COORDINATES: similar to AA sequence:RefSeq:WP_010479413.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166254.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166638.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166637.1
COORDINATES: similar to AA sequence:RefSeq:WP_010479395.1
COORDINATES: similar to AA sequence:RefSeq:WP_012168273.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012164863.1
COORDINATES: similar to AA sequence:RefSeq:WP_010480711.1
COORDINATES: similar to AA sequence:RefSeq:WP_010479874.1
COORDINATES: similar to AA sequence:RefSeq:WP_017326913.1
COORDINATES: similar to AA sequence:RefSeq:WP_012167957.1
COORDINATES: similar to AA sequence:RefSeq:WP_012165268.1
GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
glyoxalase/bleomycin resistance protein/dioxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_012166607.1