Deinococcus aquaticus strain PB-314 plasmid pDATS03, complete sequence.
Bacteria; Deinococcota; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.
Genome Sequence of Deinococcus aquaticus Type Strain PB314
Submitted (15-DEC-2022) Biology, Glendale Community College, 6000 W Olive Ave, Glendale, AZ 85302, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP115168.1.\nBacteria and source DNA available from DSM 18376.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 15-OCT-2022\nAssembly Method :: Flye v. 2.9-b1768; PGAP v.\n 2022-10-03.build6384\nAssembly Name :: GCCAZ_DaquPB314_Hybrid\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 158.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/17/2023 10:34:30\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,658\nCDSs (total) :: 3,597\nGenes (coding) :: 3,572\nCDSs (with protein) :: 3,572\nGenes (RNA) :: 61\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 2\nPseudo Genes (total) :: 25\nCDSs (without protein) :: 25\nPseudo Genes (ambiguous residues) :: 0 of 25\nPseudo Genes (frameshifted) :: 3 of 25\nPseudo Genes (incomplete) :: 20 of 25\nPseudo Genes (internal stop) :: 3 of 25\nPseudo Genes (multiple problems) :: 1 of 25\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Freshwater stream system, activated sludge
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025226.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
ankyrin repeat domain-containing protein
COORDINATES: protein motif:HMM:NF013579.2
COORDINATES: similar to AA sequence:RefSeq:WP_014101227.1
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014448562.1
class I SAM-dependent DNA methyltransferase
COORDINATES: protein motif:HMM:TIGR00180.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_014682862.1
COORDINATES: similar to AA sequence:RefSeq:WP_013556986.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019010867.1
COORDINATES: protein motif:HMM:NF025001.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF039385.1
COORDINATES: protein motif:HMM:NF016874.2
COORDINATES: protein motif:HMM:NF016535.2
COORDINATES: protein motif:HMM:TIGR01439.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012787.2
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025388.2
COORDINATES: protein motif:HMM:NF016232.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612365.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020503376.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024252.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_076611721.1
COORDINATES: similar to AA sequence:RefSeq:WP_013557059.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013557058.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_013557056.1
amino acid ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF024752.2
COORDINATES: protein motif:HMM:NF025000.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_014686930.1
COORDINATES: similar to AA sequence:RefSeq:WP_014686923.1
COORDINATES: protein motif:HMM:NF012492.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024991.2
COORDINATES: protein motif:HMM:TIGR01899.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type III-A CRISPR-associated RAMP protein Csm5
COORDINATES: protein motif:HMM:NF037153.2
COORDINATES: protein motif:HMM:TIGR02582.1
type III-A CRISPR-associated RAMP protein Csm3
COORDINATES: protein motif:HMM:NF015695.2
type III-A CRISPR-associated protein Csm2
COORDINATES: protein motif:HMM:NF037066.2
COORDINATES: protein motif:HMM:TIGR00287.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF021356.2
GO:0004521 - endoribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021551.2
CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6
COORDINATES: protein motif:HMM:NF025769.2
COORDINATES: similar to AA sequence:RefSeq:WP_014551327.1
type I restriction endonuclease subunit R
COORDINATES: protein motif:HMM:NF013752.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]