Deinococcus aquaticus strain PB-314 plasmid pDATS01, complete sequence.
Bacteria; Deinococcota; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.
Genome Sequence of Deinococcus aquaticus Type Strain PB314
Submitted (15-DEC-2022) Biology, Glendale Community College, 6000 W Olive Ave, Glendale, AZ 85302, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP115166.1.\nBacteria and source DNA available from DSM 18376.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 15-OCT-2022\nAssembly Method :: Flye v. 2.9-b1768; PGAP v.\n 2022-10-03.build6384\nAssembly Name :: GCCAZ_DaquPB314_Hybrid\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 158.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/17/2023 10:34:30\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,658\nCDSs (total) :: 3,597\nGenes (coding) :: 3,572\nCDSs (with protein) :: 3,572\nGenes (RNA) :: 61\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 2\nPseudo Genes (total) :: 25\nCDSs (without protein) :: 25\nPseudo Genes (ambiguous residues) :: 0 of 25\nPseudo Genes (frameshifted) :: 3 of 25\nPseudo Genes (incomplete) :: 20 of 25\nPseudo Genes (internal stop) :: 3 of 25\nPseudo Genes (multiple problems) :: 1 of 25\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Freshwater stream system, activated sludge
COORDINATES: similar to AA sequence:RefSeq:WP_076611852.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020202423.1
GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]
GO:0006865 - amino acid transport [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017510347.1
COORDINATES: similar to AA sequence:RefSeq:WP_004554648.1
GO:0008851 - ethanolamine ammonia-lyase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017316833.1
COORDINATES: similar to AA sequence:RefSeq:WP_006515079.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015152824.1
COORDINATES: similar to AA sequence:RefSeq:WP_019495320.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015189246.1
GO:0047343 - glucose-1-phosphate cytidylyltransferase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
glucose-1-phosphate cytidylyltransferase
COORDINATES: protein motif:HMM:NF014051.2
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_012695155.1
COORDINATES: similar to AA sequence:RefSeq:WP_013013925.1
COORDINATES: similar to AA sequence:RefSeq:WP_011526052.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011526053.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871728.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695160.1
GO:0016835 - carbon-oxygen lyase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009254 - peptidoglycan turnover [Evidence IEA]
N-acetylmuramic acid 6-phosphate etherase
COORDINATES: similar to AA sequence:RefSeq:WP_019008438.1
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012692188.1
COORDINATES: similar to AA sequence:RefSeq:WP_011529250.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_011529488.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011343.1
phosphoglucomutase/phosphomannomutase family protein
COORDINATES: protein motif:HMM:NF025011.2
helicase-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019010781.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235987.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695680.1
COORDINATES: similar to AA sequence:RefSeq:WP_011530281.1
COORDINATES: similar to AA sequence:RefSeq:WP_019585712.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010891.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010892.1
COORDINATES: similar to AA sequence:RefSeq:WP_019856042.1
COORDINATES: similar to AA sequence:RefSeq:WP_013014314.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011525712.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525711.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695037.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018465741.1
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: similar to AA sequence:RefSeq:WP_014684561.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]; GO:0042301 - phosphate ion binding [Evidence IEA]
phosphate ABC transporter substrate-binding protein PstS
COORDINATES: similar to AA sequence:RefSeq:WP_011525753.1
COORDINATES: similar to AA sequence:RefSeq:WP_002621605.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_013177399.1
COORDINATES: protein motif:HMM:NF013429.2
sugar phosphate isomerase/epimerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007635822.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
glycoside hydrolase family 3 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014683962.1
COORDINATES: similar to AA sequence:RefSeq:WP_019009690.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019009689.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586144.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586145.1
COORDINATES: similar to AA sequence:RefSeq:WP_019009686.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870312.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586147.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586148.1
COORDINATES: similar to AA sequence:RefSeq:WP_010887350.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588408.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012695153.1
BadF/BadG/BcrA/BcrD ATPase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013178926.1
COORDINATES: similar to AA sequence:RefSeq:WP_011526038.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555837.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695150.1
GO:0004370 - glycerol kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012695149.1
glycerol-3-phosphate dehydrogenase/oxidase
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008422.1
COORDINATES: similar to AA sequence:RefSeq:WP_015234908.1
PLP-dependent aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015236477.1
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: protein motif:HMM:NF013306.2
COORDINATES: similar to AA sequence:RefSeq:WP_017720187.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015132552.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_020144207.1
CoA-acylating methylmalonate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_014683990.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_015236068.1
COORDINATES: similar to AA sequence:RefSeq:WP_007416476.1
COORDINATES: similar to AA sequence:RefSeq:WP_014684044.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008473.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586032.1
COORDINATES: similar to AA sequence:RefSeq:WP_013014141.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586034.1
GO:0004157 - dihydropyrimidinase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013014145.1
GO:0017113 - dihydropyrimidine dehydrogenase (NADP+) activity [Evidence IEA]
GO:0006210 - thymine catabolic process [Evidence IEA]; GO:0006212 - uracil catabolic process [Evidence IEA]
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA
COORDINATES: similar to AA sequence:RefSeq:WP_014684050.1
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: similar to AA sequence:RefSeq:WP_019586259.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586261.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_019586262.1
COORDINATES: similar to AA sequence:RefSeq:WP_011526065.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_014695407.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525690.1
GO:0008817 - corrinoid adenosyltransferase activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011525691.1
cobalt-precorrin-7 (C(5))-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011525692.1
GO:0016993 - precorrin-8X methylmutase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013209580.1
cobalt-precorrin-5B (C(1))-methyltransferase CbiD
COORDINATES: similar to AA sequence:RefSeq:WP_012695301.1
GO:0030788 - precorrin-2 C20-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011525695.1
GO:0046026 - precorrin-4 C11-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012695303.1
COORDINATES: similar to AA sequence:RefSeq:WP_008954030.1
GO:0030789 - precorrin-3B C17-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011525698.1
COORDINATES: similar to AA sequence:RefSeq:WP_014684002.1
high frequency lysogenization protein HflD
COORDINATES: similar to AA sequence:RefSeq:WP_010542198.1
GO:0016722 - oxidoreductase activity, acting on metal ions [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]; GO:0032363 - FMN catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019011458.1
GO:0009058 - biosynthetic process [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013397.2
formate/nitrite transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011525700.1
COORDINATES: similar to AA sequence:RefSeq:WP_017926937.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_008730494.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_003263040.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695310.1
GO:0042242 - cobyrinic acid a,c-diamide synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012695311.1
CobD/CbiB family cobalamin biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_012695312.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_014695787.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010889280.1
GO:0043752 - adenosylcobinamide kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_017291440.1
COORDINATES: similar to AA sequence:RefSeq:WP_013614164.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011907.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870465.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011993.1
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019009648.1
COORDINATES: similar to AA sequence:RefSeq:WP_013177306.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019588439.1
COORDINATES: similar to AA sequence:RefSeq:WP_013156956.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017870820.1
GO:0030429 - kynureninase activity [Evidence IEA]
GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012695283.1
GO:0020037 - heme binding [Evidence IEA]; GO:0004833 - tryptophan 2,3-dioxygenase activity [Evidence IEA]
tryptophan 2,3-dioxygenase family protein
COORDINATES: protein motif:HMM:NF013752.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014685706.1
COORDINATES: similar to AA sequence:RefSeq:WP_017870666.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010887383.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017870664.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588083.1
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF012464.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012489250.1
COORDINATES: protein motif:HMM:NF025078.2
COORDINATES: similar to AA sequence:RefSeq:WP_012692661.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692662.1
COORDINATES: similar to AA sequence:RefSeq:WP_013558164.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692664.1
phage tail sheath subtilisin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012692665.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692666.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692667.1
COORDINATES: similar to AA sequence:RefSeq:WP_013558169.1
COORDINATES: protein motif:HMM:NF012298.2
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF039279.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692671.1
COORDINATES: similar to AA sequence:RefSeq:WP_012692672.1
COORDINATES: similar to AA sequence:RefSeq:WP_014684984.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008508.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010889570.1
GO:0016151 - nickel cation binding [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019009550.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016530 - metallochaperone activity [Evidence IEA]
GO:0019627 - urea metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019009551.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889573.1
COORDINATES: similar to AA sequence:RefSeq:WP_020720320.1
GO:0016530 - metallochaperone activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
hydrogenase nickel incorporation protein HypB
COORDINATES: similar to AA sequence:RefSeq:WP_010889575.1
hydrogenase maturation nickel metallochaperone HypA
COORDINATES: similar to AA sequence:RefSeq:WP_010889577.1
GO:0016151 - nickel cation binding [Evidence IEA]; GO:0009039 - urease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010889578.1
GO:0035550 - urease complex [Evidence IEA]
GO:0043419 - urea catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015458187.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0033221 - ATPase-coupled urea transmembrane transporter activity [Evidence IEA]; GO:0033219 - urea binding [Evidence IEA]
GO:0015840 - urea transport [Evidence IEA]
urea ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010889580.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0033221 - ATPase-coupled urea transmembrane transporter activity [Evidence IEA]
urea ABC transporter permease subunit UrtB
COORDINATES: similar to AA sequence:RefSeq:WP_004271829.1
urea ABC transporter permease subunit UrtC
COORDINATES: similar to AA sequence:RefSeq:WP_004271830.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0033221 - ATPase-coupled urea transmembrane transporter activity [Evidence IEA]
urea ABC transporter ATP-binding protein UrtD
COORDINATES: similar to AA sequence:RefSeq:WP_019011445.1
urea ABC transporter ATP-binding subunit UrtE
COORDINATES: similar to AA sequence:RefSeq:WP_019010454.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010453.1
COORDINATES: similar to AA sequence:RefSeq:WP_014433118.1
COORDINATES: similar to AA sequence:RefSeq:WP_015236504.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019584808.1
COORDINATES: similar to AA sequence:RefSeq:WP_013581718.1
GO:0004587 - ornithine-oxo-acid transaminase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020075738.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586412.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008373.1
GO:0071522 - ureidoglycine aminohydrolase activity [Evidence IEA]
GO:0010136 - ureide catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010887796.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587853.1
GO:0016813 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010887798.1
COORDINATES: similar to AA sequence:RefSeq:WP_003048057.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695629.1
GO:0004474 - malate synthase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011531291.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019586438.1
GO:0008965 - phosphoenolpyruvate-protein phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
phosphoenolpyruvate--protein phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012694217.1
1-phosphofructokinase family hexose kinase
COORDINATES: similar to AA sequence:RefSeq:WP_008955212.1
GO:0022877 - protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
PTS fructose-like transporter subunit IIB
COORDINATES: similar to AA sequence:RefSeq:WP_010887802.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010887804.1
GO:0019628 - urate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019010631.1
GO:0004846 - urate oxidase activity [Evidence IEA]
sensor domain-containing diguanylate cyclase
COORDINATES: protein motif:HMM:NF019314.2
COORDINATES: similar to AA sequence:RefSeq:WP_019009277.1
COORDINATES: protein motif:HMM:TIGR03561.1
GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_013555450.1
COORDINATES: similar to AA sequence:RefSeq:WP_014684023.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010199676.1
GO:0005355 - glucose transmembrane transporter activity [Evidence IEA]
glucose-specific PTS transporter subunit IIBC
COORDINATES: similar to AA sequence:RefSeq:WP_011525945.1
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011525944.1
COORDINATES: similar to AA sequence:RefSeq:WP_013622959.1
GO:0008448 - N-acetylglucosamine-6-phosphate deacetylase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]
N-acetylglucosamine-6-phosphate deacetylase
COORDINATES: similar to AA sequence:RefSeq:WP_011525942.1
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: similar to AA sequence:RefSeq:WP_019010929.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525650.1
NADPH:quinone oxidoreductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012695348.1
COORDINATES: similar to AA sequence:RefSeq:WP_013615484.1
COORDINATES: similar to AA sequence:RefSeq:WP_010889538.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586169.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010924.1
COORDINATES: similar to AA sequence:RefSeq:WP_017871411.1
COORDINATES: similar to AA sequence:RefSeq:WP_020700646.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695339.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019586159.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525659.1
COORDINATES: similar to AA sequence:RefSeq:WP_011526046.1
COORDINATES: similar to AA sequence:RefSeq:WP_019585562.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695346.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694373.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694374.1
carboxypeptidase regulatory-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019010918.1
COORDINATES: similar to AA sequence:RefSeq:WP_011529468.1
COORDINATES: similar to AA sequence:RefSeq:WP_019005771.1
COORDINATES: similar to AA sequence:RefSeq:WP_019010900.1
cyclic nucleotide-binding domain-containing thioredoxin-disulfide reductase
COORDINATES: similar to AA sequence:RefSeq:WP_012188442.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695333.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008439.1
COORDINATES: similar to AA sequence:RefSeq:WP_006141787.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695733.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587843.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]; GO:0004854 - xanthine dehydrogenase activity [Evidence IEA]
GO:0009115 - xanthine catabolic process [Evidence IEA]
xanthine dehydrogenase molybdopterin binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010889439.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
GO:0065003 - protein-containing complex assembly [Evidence IEA]; GO:0009115 - xanthine catabolic process [Evidence IEA]
xanthine dehydrogenase accessory protein XdhC
COORDINATES: similar to AA sequence:RefSeq:WP_014695736.1
GO:0008892 - guanine deaminase activity [Evidence IEA]
GO:0006147 - guanine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015158105.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387700.1
metal ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007536080.1
metal ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012695165.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695166.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695167.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695168.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555455.1
COORDINATES: similar to AA sequence:RefSeq:WP_012693806.1
iron-siderophore ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525662.1
COORDINATES: similar to AA sequence:RefSeq:WP_012693926.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0008942 - nitrite reductase [NAD(P)H] activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011525664.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0008942 - nitrite reductase [NAD(P)H] activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0042128 - nitrate assimilation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014138965.1
molybdopterin oxidoreductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014695427.1
bifunctional diguanylate cyclase/phosphodiesterase
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013157420.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695448.1
COORDINATES: similar to AA sequence:RefSeq:WP_014695449.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008352.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008351.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008355.1
COORDINATES: similar to AA sequence:RefSeq:WP_011958074.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694607.1
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: protein motif:HMM:TIGR00377.1
COORDINATES: protein motif:HMM:NF018884.2
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: similar to AA sequence:RefSeq:WP_018743898.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_018467598.1
COORDINATES: similar to AA sequence:RefSeq:WP_007191059.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015237009.1
COORDINATES: protein motif:HMM:NF024883.2
COORDINATES: similar to AA sequence:RefSeq:WP_019011386.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019585572.1
COORDINATES: protein motif:HMM:NF020906.2
COORDINATES: similar to AA sequence:RefSeq:WP_013556448.1
COORDINATES: similar to AA sequence:RefSeq:WP_004109174.1
COORDINATES: similar to AA sequence:RefSeq:WP_014685153.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_019008412.1
COORDINATES: similar to AA sequence:RefSeq:WP_017869441.1
COORDINATES: similar to AA sequence:RefSeq:WP_014686647.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0071555 - cell wall organization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014686644.1
COORDINATES: similar to AA sequence:RefSeq:WP_014686642.1
COORDINATES: similar to AA sequence:RefSeq:WP_014686651.1
COORDINATES: similar to AA sequence:RefSeq:WP_011525734.1
HAMP domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF012403.2
COORDINATES: similar to AA sequence:RefSeq:WP_015231403.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011319.1
COORDINATES: similar to AA sequence:RefSeq:WP_010887311.1
IS200/IS605 family element RNA-guided endonuclease TnpB
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012699741.1
COORDINATES: protein motif:HMM:NF028132.2
COORDINATES: protein motif:HMM:NF022630.2
GO:0042121 - alginic acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014763.2
COORDINATES: protein motif:HMM:NF013508.2
COORDINATES: protein motif:HMM:NF014373.2
COORDINATES: protein motif:HMM:NF040570.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008398.1
COORDINATES: similar to AA sequence:RefSeq:WP_019087012.1