Xanthomonas axonopodis pv. vasculorum strain NCPPB 796 plasmid unamed1, complete sequence.
type: Entry
definition: Xanthomonas axonopodis pv. vasculorum strain NCPPB 796 plasmid unamed1, complete sequence.
sequence version: NZ_CP053650.1
sequence date: 2023-04-28
sequence: sequence
division: CON
label: NZ_CP053650.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN14772551
keyword: RefSeq
source: Xanthomonas axonopodis pv. vasculorum
organism: Xanthomonas axonopodis pv. vasculorum
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP053650.1.\nBacteria and source DNA available from ATCC 35938.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 13-MAY-2020\nAssembly Method :: Unicycler v. v0.4.9b\nAssembly Name :: LNBR_Xav\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Oxford Nanopore MiniION; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 10:59:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,337\nCDSs (total) :: 4,225\nGenes (coding) :: 3,572\nCDSs (with protein) :: 3,572\nGenes (RNA) :: 112\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 53\nPseudo Genes (total) :: 653\nCDSs (without protein) :: 653\nPseudo Genes (ambiguous residues) :: 0 of 653\nPseudo Genes (frameshifted) :: 400 of 653\nPseudo Genes (incomplete) :: 268 of 653\nPseudo Genes (internal stop) :: 186 of 653\nPseudo Genes (multiple problems) :: 183 of 653\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 13693
topology: circular
so has quality: SO_0000988
location: 1..13693
location: region:1-13693:1
RO_0002162: 325777

NZ_CP053650
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN14772551
type: BioSample
SIO_000068: biosample

1
title: Complete Genome sequencing of Xanthomonas axonopodis pv. vasculorum using Nanopore and Illumina Sequencing
author: Teixeira, A.C.
author: Coerini, L.F.
author: Paixao, D.A.A.
author: Lanza, S.A.
author: Persinoti, G.F.
author: Oliveira, J.V.C.
journal: Unpublished

2
title: Direct Submission
author: Teixeira, A.C.
author: Coerini, L.F.
author: Paixao, D.A.A.
author: Lanza, S.A.
author: Persinoti, G.F.
author: Oliveira, J.V.C.
journal: Submitted (20-MAY-2020) Brazilian Biorenewables National Laboratory (LNBR), Brazilian Center for Research in Energy and Materials (CNPEM), Rua Giuseppe Maximo Scolfaro 10000, Campinas, Sao Paulo 13083-970, Brazil

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13693:1
position: 13693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13693:1:source
so part of: sequence
organism: Xanthomonas axonopodis pv. vasculorum
mol type: genomic DNA
strain: NCPPB 796
host: sugarcane
culture collection: ATCC:35938
plasmid: unamed1
country: Mauritius
collection date: 1960
pathovar: vasculorum

325777
type: Taxonomy
SIO_000068: taxonomy

XAV_RS21445
type: Gene
subclass of: SO_0000704
RO_0002162: 325777
locus tag: XAV_RS21445
old locus tag: XAV_21525
so part of: sequence
location: 1..1011
location: region:1-1011:1
so has part: feature:1-1011:1:exon
subclass of: SO_0000010

58005311
type: Gene
SIO_000068: ncbigene

position:1011:1
position: 1011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1011:1:exon

XAV_RS21445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 325777
locus tag: XAV_RS21445
old locus tag: XAV_21525
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004167349.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein RepA
translation: MVKKREGQGAQQIGDLLGDLVAKENAKAALPPPKRQTKKITPSGLILTAADQKLIEAGAEIATNPPSGEDMAFTHTVLCQVGLPRSKVEGREFMRQSGAAWINIQAGYLDEGKGPVLQPIPYGAKPRLGMAWVSTYAVRNKEREVPIGDSAAEFLRLMGMDDQGGNYKALRLQMHAMAACRMQLGFKGRTYNGQPVQQFDAWVSNKETKQRALWPGVMVLSEDYYGSLIASAVPLDNRALHHLKGSALALDVYCWLAHRLHRIQGKGLMLHWKALREQFAQEYTGPNADKNFKDSFLPALKKVLTVYPQARVKPVNGGVLLIGSPPPIAYKGGPTV
SIO_010081: XAV_RS21445
subclass of: SO_0000673
so part of: XAV_RS21445
location: 1..1011
location: region:1-1011:1
so has part: feature:1-1011:1:exon

WP_015060307.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1011:1:exon

XAV_RS21450
type: Gene
subclass of: SO_0000704
RO_0002162: 325777
locus tag: XAV_RS21450
old locus tag: XAV_21530
so part of: sequence
location: 1968..2864
location: region:1968-2864:1
so has part: feature:1968-2864:1:exon
subclass of: SO_0000010

58005312
type: Gene
SIO_000068: ncbigene

position:1968:1
position: 1968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2864:1
position: 2864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1968-2864:1:exon

XAV_RS21450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 325777
locus tag: XAV_RS21450
old locus tag: XAV_21530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020227806.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MAREGITFEQVAAAADSLVGEGQQPTIRAVRERLNTGSPNTVHKHLTAWREARPVAAVAAPELPQALTAAIAAEIERAAAQARAEIEGRLVQAQGEAAELAAAGEAIEVERDALADQVAELARERDTLAGKAEQQAVDLADQAQRIEREQQAAESARVALATARLKIEAQAERQVEQVAEIERLRTSLEASQQARTAAEQQAAVLAAKLDGAMAQLAQQGEAHAEARKQAAAEAHRATERMTQAQAERDEARKVAAEAREQAARLAGQLEVFTAQQEPAEGQPAGATKPTRAKAKKVE
SIO_010081: XAV_RS21450
subclass of: SO_0000673
so part of: XAV_RS21450
location: 1968..2864
location: region:1968-2864:1
so has part: feature:1968-2864:1:exon

WP_134984116.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1968-2864:1:exon

XAV_RS21455
type: Gene
subclass of: SO_0000704
RO_0002162: 325777
locus tag: XAV_RS21455
old locus tag: XAV_21535
so part of: sequence
location: complement(2865..3119)
location: region:2865-3119:-1
so has part: feature:2865-3119:-1:exon
subclass of: SO_0000010

58005313
type: Gene
SIO_000068: ncbigene

position:2865:-1
position: 2865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3119:-1
position: 3119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2865-3119:-1:exon

XAV_RS21455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 325777
locus tag: XAV_RS21455
old locus tag: XAV_21535
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011875783.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTWTDEQLADYECALETIGNAIALKARGIEEEKAKPVPNADRLADLRQQQAELAGERRSLRICDHDAVAHTIRRYGQIVRASA
SIO_010081: XAV_RS21455
subclass of: SO_0000673
so part of: XAV_RS21455
location: complement(2865..3119)
location: region:2865-3119:-1
so has part: feature:2865-3119:-1:exon

WP_134984115.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2865-3119:-1:exon

XAV_RS21460
type: Gene
subclass of: SO_0000704
RO_0002162: 325777
locus tag: XAV_RS21460
old locus tag: XAV_21540
so part of: sequence
location: complement(3515..3811)
location: region:3515-3811:-1
so has part: feature:3515-3811:-1:exon
subclass of: SO_0000010

58005314
type: Gene
SIO_000068: ncbigene

position:3515:-1
position: 3515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3811:-1
position: 3811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3515-3811:-1:exon

XAV_RS21460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 325777
locus tag: XAV_RS21460
old locus tag: XAV_21540
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKERQFTVGQVKALLADMDAEFPPLTGEQVDANKASEKRRAADRKKREGVGILRAEVETLKKRGMSLRRIADVLQGNHLDEATPTLRKHMQEAREPT
SIO_010081: XAV_RS21460
subclass of: SO_0000673
so part of: XAV_RS21460
location: complement(3515..3811)
location: region:3515-3811:-1
so has part: feature:3515-3811:-1:exon

WP_134984114.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3515-3811:-1:exon

XAV_RS21465
type: Gene
subclass of: SO_0000704
RO_0002162: 325777
locus tag: XAV_RS21465
old locus tag: XAV_21545
so part of: sequence
location: 4097..4405
location: region:4097-4405:1
so has part: feature:4097-4405:1:exon
subclass of: SO_0000010

58005315
type: Gene
SIO_000068: ncbigene

position:4097:1
position: 4097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4405:1
position: 4405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4097-4405:1:exon

XAV_RS21465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 325777
locus tag: XAV_RS21465
old locus tag: XAV_21545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005933969.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobB mobilization protein
translation: MPFAVKGAEALTEKIAVRLTPDEKARLRDDAEVAGLSVSELVRRRYFGRPIVANADMVMVRELRRIGGLLKHIHNTTDGVYSRETSQALVEITGHIKKLSQP
SIO_010081: XAV_RS21465
subclass of: SO_0000673
so part of: XAV_RS21465
location: 4097..4405
location: region:4097-4405:1
so has part: feature:4097-4405:1:exon

WP_042825445.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4097-4405:1:exon

XAV_RS21470
type: Gene
subclass of: SO_0000704
RO_0002162: 325777
locus tag: XAV_RS21470
old locus tag: XAV_21550
so part of: sequence
location: 4402..6078
location: region:4402-6078:1
so has part: feature:4402-6078:1:exon
subclass of: SO_0000010

58005316
type: Gene
SIO_000068: ncbigene

position:4402:1
position: 4402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6078:1
position: 6078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4402-6078:1:exon

XAV_RS21470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 325777
locus tag: XAV_RS21470
old locus tag: XAV_21550
inference: COORDINATES: protein motif:HMM:NF015397.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraI/MobA(P) family conjugative relaxase
translation: MIVKKVPADRVKSKAKHVRDLTDYIRDPAKTNPHEKVAYTSARGFLCDDHAGQQSEMIALAMDAPRSANPINHYILSWREGEYPTPAQVEQAVEILLAELGLAEHQALYALHQDTDNMHLHIAVNRVHPDTLKVIKPNKGFDKEAGHRAIAKIQAIQGWSSERNARYQVDANGEAIRGDSDGHKAPSQKRRDMEVRTGERSAERIAIEAAAPIIREASSWTELHTRLQAQCFRYERKGSGAVIWIGDVPVKASSADRGATLAALQKRLGEFQPAASVDALPTLPAKPIKATAPRWAEYIAARRAHYQTKTAAQIRLRERHELERQGVAEQQHTERADVTAGKWRGKGDRLNALRSVLAADQATMRLRMQERQSGERRRFRERFRPFPGYEEWLRVEESHQAADEWRYRDHEPDEIPARIVGDVRVDPAETRRRKDLRDFMAEIHGDRVAYHLAGRVSPAFVDRGDRIDVHDADDEAAILAALQLSAEKWGTFQVTGSEAYKARCARLAARYGFTITNPDLQDKIREEIARLAAQRSQFAGQIGRSADGAPKRPPRRLS
SIO_010081: XAV_RS21470
subclass of: SO_0000673
so part of: XAV_RS21470
location: 4402..6078
location: region:4402-6078:1
so has part: feature:4402-6078:1:exon

WP_134984113.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4402-6078:1:exon

XAV_RS21475
type: Gene
subclass of: SO_0000704
RO_0002162: 325777
locus tag: XAV_RS21475
old locus tag: XAV_21555
so part of: sequence
location: 6149..6373
location: region:6149-6373:1
so has part: feature:6149-6373:1:exon
subclass of: SO_0000010

58005317
type: Gene
SIO_000068: ncbigene

position:6149:1
position: 6149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6373:1
position: 6373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6149-6373:1:exon

XAV_RS21475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 325777
locus tag: XAV_RS21475
old locus tag: XAV_21555
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011390943.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraY domain-containing protein
translation: MLAIRLPPEIENRLDALAAATGRTKTFYAREAILEHLDDLEDVYLAEQRLADIRAGRTAPVPLEDVMKKYGLAD
SIO_010081: XAV_RS21475
subclass of: SO_0000673
so part of: XAV_RS21475
location: 6149..6373
location: region:6149-6373:1
so has part: feature:6149-6373:1:exon

WP_042825456.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6149-6373:1:exon

XAV_RS21480
type: Gene
subclass of: SO_0000704
RO_0002162: 325777
locus tag: XAV_RS21480
old locus tag: XAV_21560
so part of: sequence
location: 6357..6629
location: region:6357-6629:1
so has part: feature:6357-6629:1:exon
subclass of: SO_0000010

58005318
type: Gene
SIO_000068: ncbigene

position:6357:1
position: 6357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6629:1
position: 6629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6357-6629:1:exon

XAV_RS21480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 325777
locus tag: XAV_RS21480
old locus tag: XAV_21560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004514725.1
GO function: GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO process: GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MAWRIEIDPAAEKELDKLGREVAKRILRFLFDRVAKLDDPRSIGEALKGSKLGEFWKYRVGDYRIIADIQDGALCILIVRVGNRREVYKR
SIO_010081: XAV_RS21480
subclass of: SO_0000673
so part of: XAV_RS21480
location: 6357..6629
location: region:6357-6629:1
so has part: feature:6357-6629:1:exon

WP_042825444.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6357-6629:1:exon

XAV_RS21485
type: Gene
subclass of: SO_0000704
RO_0002162: 325777
locus tag: XAV_RS21485
old locus tag: XAV_21565
so part of: sequence
location: 6626..6904
location: region:6626-6904:1
so has part: feature:6626-6904:1:exon
subclass of: SO_0000010

58005319
type: Gene
SIO_000068: ncbigene

position:6626:1
position: 6626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6904:1
position: 6904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6626-6904:1:exon

XAV_RS21485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 325777
locus tag: XAV_RS21485
old locus tag: XAV_21565
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDDYDAWFHRQVRRGLQEADDPKTEWVSHDQVKADMASQRAALQRRIEGMGGDYTRCGTPLVYAGQLELQPDILAESGEQKKPDQEASPST
SIO_010081: XAV_RS21485
subclass of: SO_0000673
so part of: XAV_RS21485
location: 6626..6904
location: region:6626-6904:1
so has part: feature:6626-6904:1:exon

WP_042825442.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6626-6904:1:exon

XAV_RS21490
type: Gene
subclass of: SO_0000704
RO_0002162: 325777
locus tag: XAV_RS21490
old locus tag: XAV_21570
so part of: sequence
location: 6984..7238
location: region:6984-7238:1
so has part: feature:6984-7238:1:exon
subclass of: SO_0000010

58005320
type: Gene
SIO_000068: ncbigene

position:6984:1
position: 6984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7238:1
position: 7238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6984-7238:1:exon

XAV_RS21490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 325777
locus tag: XAV_RS21490
old locus tag: XAV_21570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004541364.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAIEHPISPDAVRFEIARLQWANALMRAANKALAKGDNAALIDMGFSPEHIGELQKNGGFRPSSIGNNTRMITYLRSIGGLHAH
SIO_010081: XAV_RS21490
subclass of: SO_0000673
so part of: XAV_RS21490
location: 6984..7238
location: region:6984-7238:1
so has part: feature:6984-7238:1:exon

WP_244953673.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6984-7238:1:exon

XAV_RS21495
type: Gene
subclass of: SO_0000704
RO_0002162: 325777
locus tag: XAV_RS21495
old locus tag: XAV_21575
so part of: sequence
location: 7228..7446
location: region:7228-7446:1
so has part: feature:7228-7446:1:exon
subclass of: SO_0000010

58005321
type: Gene
SIO_000068: ncbigene

position:7228:1
position: 7228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7446:1
position: 7446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7228-7446:1:exon

XAV_RS21495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 325777
locus tag: XAV_RS21495
old locus tag: XAV_21575
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLTEPIQPLSIAAAVLAPATLGSIRRSVSFHRRGWQILDRWAFESPAQVRALEAEGEVILLGRLLEQQQLEH
SIO_010081: XAV_RS21495
subclass of: SO_0000673
so part of: XAV_RS21495
location: 7228..7446
location: region:7228-7446:1
so has part: feature:7228-7446:1:exon

WP_219820549.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7228-7446:1:exon

XAV_RS21500
type: Gene
subclass of: SO_0000704
RO_0002162: 325777
locus tag: XAV_RS21500
old locus tag: XAV_21580
so part of: sequence
location: complement(7575..8084)
location: region:7575-8084:-1
so has part: feature:7575-8084:-1:exon
subclass of: SO_0000010

58005322
type: Gene
SIO_000068: ncbigene

position:7575:-1
position: 7575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8084:-1
position: 8084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7575-8084:-1:exon

XAV_RS21500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 325777
locus tag: XAV_RS21500
old locus tag: XAV_21580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009932175.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLNLAIVLVPVVLALASIVGLVFSGLGLFVGVSALDGMPWIVTSIAGLVVAIVWIRVFASHLSEKLDRQVQRVAPEGFRPAVEASAPTEGQYVGISTETGSVVVVDKKKGIAKQLPIGKVSRWEFEDAERGSTYLVLWFNDHALPSTRVLVPRRSVDDTASRLRMALGF
SIO_010081: XAV_RS21500
subclass of: SO_0000673
so part of: XAV_RS21500
location: complement(7575..8084)
location: region:7575-8084:-1
so has part: feature:7575-8084:-1:exon

WP_134984112.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7575-8084:-1:exon

XAV_RS21505
type: Gene
subclass of: SO_0000704
RO_0002162: 325777
locus tag: XAV_RS21505
old locus tag: XAV_21585
so part of: sequence
location: complement(8096..10273)
location: region:8096-10273:-1
so has part: feature:8096-10273:-1:exon
subclass of: SO_0000010

58005323
type: Gene
SIO_000068: ncbigene

position:8096:-1
position: 8096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10273:-1
position: 10273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8096-10273:-1:exon

XAV_RS21505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 325777
locus tag: XAV_RS21505
old locus tag: XAV_21585
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014917959.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DotA/TraY family protein
translation: MKHKAALFLATILNGLVTLPAFAQSTSLGEITQAAQRSGDISRKVLVGIFGNVVNNPLATGGAGGGDTILASLFQVTNGGLLVVGAFFACYTWFKKLSQVAHSGAAYGENKGTMWGPIRLVWGLASLVPTANGWALSQLLMLWAASVMGIGIANMGTDAAIQAFSDGKGMVLQPAMPSTIQLARDLYQANLCMHAYNAGLSMVGANGGTPPDPQEYVQVTSGSQGLVLRNPIGTKYCGGADIDASKLTPQDQSTNWFSGTIDTTTLYQTHLQALKNMETALSPTAQAFVNAVIDQQTNASAIIPDAEVAIQSAAQTYEATIQSQAATTTGNISSLASQLSSSIKEAGWWSLGAWYQTFAQANSKLSDAVSAVAHVYKEQVGGYDGVSQLRSRVDSAFQLQEAGSTAAQPLGNAGAGNAASEKDGGKALGQIFSGFGQKIIAAMTSSGDAERGTVNPLIKMKNLGDYTLGGVEGAFGVWVGLNAVVAGADASIWGKVANIASGLGAAAGAALHATEPMLFTLLVPLLLIGAGLSLYLPMIPFITWFGAVMNWIIIVGEAIVAAPLWAMTHLGGEGDGMGQRTTHGYIFLLNVAVRPILMVIGFFFGGAVLQEGGTVLNMFFGIAVANAQFDSLTGIVSVIGYLAIYFMLGANLIQTSFSLIFVVPDQVINWVGGLASPTLGRETTGEVRGALAVFSSKLERIMPGAPKRNADKGGSRPSQTDGMHS
SIO_010081: XAV_RS21505
subclass of: SO_0000673
so part of: XAV_RS21505
location: complement(8096..10273)
location: region:8096-10273:-1
so has part: feature:8096-10273:-1:exon

WP_134984111.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8096-10273:-1:exon

XAV_RS21510
type: Gene
subclass of: SO_0000704
RO_0002162: 325777
locus tag: XAV_RS21510
old locus tag: XAV_21590
so part of: sequence
location: complement(10270..10839)
location: region:10270-10839:-1
so has part: feature:10270-10839:-1:exon
subclass of: SO_0000010

58005324
type: Gene
SIO_000068: ncbigene

position:10270:-1
position: 10270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10839:-1
position: 10839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10270-10839:-1:exon

XAV_RS21510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 325777
locus tag: XAV_RS21510
old locus tag: XAV_21590
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009971165.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDVKQTAKSVGVEIAKRLFLPTYAFRKNVQSFKAAKQQHDENIVYIKDLIARARQQKARAEQQGEGGAASEQGFEEMMRSRSAGAPSTVELERRFRFQKRLAIGTGTVFLLMAVYALSRGNVFGIFTLVAGLPVMFMASLSAQFRLWQLRNRRLSRAEHGGLNDFMREPGWFVSVLDPEFGKLPQGERT
SIO_010081: XAV_RS21510
subclass of: SO_0000673
so part of: XAV_RS21510
location: complement(10270..10839)
location: region:10270-10839:-1
so has part: feature:10270-10839:-1:exon

WP_042825451.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10270-10839:-1:exon

XAV_RS21515
type: Gene
subclass of: SO_0000704
RO_0002162: 325777
locus tag: XAV_RS21515
old locus tag: XAV_21595
so part of: sequence
location: complement(10839..11123)
location: region:10839-11123:-1
so has part: feature:10839-11123:-1:exon
subclass of: SO_0000010

58005325
type: Gene
SIO_000068: ncbigene

position:11123:-1
position: 11123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10839-11123:-1:exon

XAV_RS21515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 325777
locus tag: XAV_RS21515
old locus tag: XAV_21595
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQIDSESPSASALLWTKRGWLFFFAACLVVAALFRPFNWIWLASAFVCLVIALITHERLSVVRGKPCRWRDVFDWEDPLTAWLNKRTSNNREDK
SIO_010081: XAV_RS21515
subclass of: SO_0000673
so part of: XAV_RS21515
location: complement(10839..11123)
location: region:10839-11123:-1
so has part: feature:10839-11123:-1:exon

WP_134984110.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10839-11123:-1:exon

XAV_RS21520
type: Gene
subclass of: SO_0000704
RO_0002162: 325777
locus tag: XAV_RS21520
old locus tag: XAV_21600
so part of: sequence
location: complement(11705..11857)
location: region:11705-11857:-1
so has part: feature:11705-11857:-1:exon
subclass of: SO_0000010

58005326
type: Gene
SIO_000068: ncbigene

position:11705:-1
position: 11705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11857:-1
position: 11857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11705-11857:-1:exon

XAV_RS21520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 325777
locus tag: XAV_RS21520
old locus tag: XAV_21600
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTIDHPHDDELRELVDRITPDNRHLEVDFGRPVGRETWSPYEDLSAPAGE
SIO_010081: XAV_RS21520
subclass of: SO_0000673
so part of: XAV_RS21520
location: complement(11705..11857)
location: region:11705-11857:-1
so has part: feature:11705-11857:-1:exon

WP_167551847.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11705-11857:-1:exon

XAV_RS21525
type: Gene
subclass of: SO_0000704
RO_0002162: 325777
locus tag: XAV_RS21525
old locus tag: XAV_21605
so part of: sequence
location: 12050..12676
location: region:12050-12676:1
so has part: feature:12050-12676:1:exon
subclass of: SO_0000010

58005327
type: Gene
SIO_000068: ncbigene

position:12050:1
position: 12050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12676:1
position: 12676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12050-12676:1:exon

XAV_RS21525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 325777
locus tag: XAV_RS21525
old locus tag: XAV_21605
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011052932.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MMRDPADHCTRDLSGHVIGYARVSTADQDAAMQREALNAAGAAKVFEDVASGAKADRPGLTAALAYLREGDTLAVWKLDRLGRSLPHLVQTVAELEQRGVGFRSLTESIDTTTPGGRLVFHLFAALADFERDLIRERTRAGLAVAKARGSAAGRRPVVTADKLARARMLIDAKGLTVREAAARVKVGKTALYKALAAEDAGLVALAES
SIO_010081: XAV_RS21525
subclass of: SO_0000673
so part of: XAV_RS21525
location: 12050..12676
location: region:12050-12676:1
so has part: feature:12050-12676:1:exon

WP_244953674.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12050-12676:1:exon

XAV_RS21530
type: Gene
subclass of: SO_0000704
RO_0002162: 325777
gene: parA
locus tag: XAV_RS21530
old locus tag: XAV_21610
so part of: sequence
location: 12771..13403
location: region:12771-13403:1
so has part: feature:12771-13403:1:exon
subclass of: SO_0000010

58005328
type: Gene
SIO_000068: ncbigene

position:12771:1
position: 12771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13403:1
position: 13403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12771-13403:1:exon

XAV_RS21530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 325777
gene: parA
locus tag: XAV_RS21530
old locus tag: XAV_21610
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017154806.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family partition ATPase
translation: MKVIAVLNQKGGSGKTTIATHLARALQLDGDDVLLVDSDPQGSARDWAAVRDDQPLTVVGIDRPTIDRDVKNVARKVDFVVIDGAPQAADLAVSAIKAADFVLIPVQPSPYDIWATADLVDLVKQRIEVTDGKLQAAFIVSRAIKGTRIGGEVTEALAGYGLPVLESRITQRVSYPGTAAVGTTVLEAEPDGDAATEVRGLAAEIKQKLI
SIO_010081: XAV_RS21530
subclass of: SO_0000673
so part of: XAV_RS21530
location: 12771..13403
location: region:12771-13403:1
so has part: feature:12771-13403:1:exon

WP_015060305.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12771-13403:1:exon

XAV_RS21535
type: Gene
subclass of: SO_0000704
RO_0002162: 325777
locus tag: XAV_RS21535
old locus tag: XAV_21615
so part of: sequence
location: 13424..13639
location: region:13424-13639:1
so has part: feature:13424-13639:1:exon
subclass of: SO_0000010

58005329
type: Gene
SIO_000068: ncbigene

position:13424:1
position: 13424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13639:1
position: 13639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13424-13639:1:exon

XAV_RS21535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 325777
locus tag: XAV_RS21535
old locus tag: XAV_21615
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017154883.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome partitioning protein ParB
translation: MSKTTTTLSAGRPSARSNKAATLASLSDDVAVKRVNFELSAEQHAKLKIYAAKQGKSIKELLTEYVSGLPD
SIO_010081: XAV_RS21535
subclass of: SO_0000673
so part of: XAV_RS21535
location: 13424..13639
location: region:13424-13639:1
so has part: feature:13424-13639:1:exon

WP_042825449.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13424-13639:1:exon