Xanthomonas axonopodis pv. vasculorum strain NCPPB 796 plasmid unamed1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
Complete Genome sequencing of Xanthomonas axonopodis pv. vasculorum using Nanopore and Illumina Sequencing
Submitted (20-MAY-2020) Brazilian Biorenewables National Laboratory (LNBR), Brazilian Center for Research in Energy and Materials (CNPEM), Rua Giuseppe Maximo Scolfaro 10000, Campinas, Sao Paulo 13083-970, Brazil
REFSEQ INFORMATION: The reference sequence is identical to\nCP053650.1.\nBacteria and source DNA available from ATCC 35938.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 13-MAY-2020\nAssembly Method :: Unicycler v. v0.4.9b\nAssembly Name :: LNBR_Xav\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Oxford Nanopore MiniION; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 10:59:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,337\nCDSs (total) :: 4,225\nGenes (coding) :: 3,572\nCDSs (with protein) :: 3,572\nGenes (RNA) :: 112\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 53\nPseudo Genes (total) :: 653\nCDSs (without protein) :: 653\nPseudo Genes (ambiguous residues) :: 0 of 653\nPseudo Genes (frameshifted) :: 400 of 653\nPseudo Genes (incomplete) :: 268 of 653\nPseudo Genes (internal stop) :: 186 of 653\nPseudo Genes (multiple problems) :: 183 of 653\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004167349.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020227806.1
COORDINATES: similar to AA sequence:RefSeq:WP_011875783.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005933969.1
COORDINATES: protein motif:HMM:NF015397.2
TraI/MobA(P) family conjugative relaxase
COORDINATES: similar to AA sequence:RefSeq:WP_011390943.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514725.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004541364.1
COORDINATES: similar to AA sequence:RefSeq:WP_009932175.1
COORDINATES: similar to AA sequence:RefSeq:WP_014917959.1
COORDINATES: similar to AA sequence:RefSeq:WP_009971165.1
COORDINATES: similar to AA sequence:RefSeq:WP_011052932.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017154806.1
COORDINATES: similar to AA sequence:RefSeq:WP_017154883.1