Nitrosospira multiformis ATCC 25196 plasmid 3, complete sequence.
type: Entry
definition: Nitrosospira multiformis ATCC 25196 plasmid 3, complete sequence.
sequence version: NC_007617.1
sequence date: 2023-08-02
sequence: sequence
division: CON
label: NC_007617.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02598322
keyword: RefSeq
source: Nitrosospira multiformis ATCC 25196
organism: Nitrosospira multiformis ATCC 25196
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.
reference: 1
references: 18390676
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP000106.1.\nURL -- http://www.jgi.doe.gov\nSource DNA available from Dan Arp (arpd@bcc.orst.edu)\nBacteria available from ATCC: ATCC 25196\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LLNL\nQuality assurance done by JGI-Stanford\nAnnotation done by JGI-ORNL and JGI-PGF\nContacts: Paul Richardson (microbes@cuba.jgi-psf.org)\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/10/2023 13:45:37\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,908\nCDSs (total) :: 2,858\nGenes (coding) :: 2,817\nCDSs (with protein) :: 2,817\nGenes (RNA) :: 50\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 4\nPseudo Genes (total) :: 41\nCDSs (without protein) :: 41\nPseudo Genes (ambiguous residues) :: 0 of 41\nPseudo Genes (frameshifted) :: 22 of 41\nPseudo Genes (incomplete) :: 25 of 41\nPseudo Genes (internal stop) :: 6 of 41\nPseudo Genes (multiple problems) :: 10 of 41\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 14159
topology: circular
so has quality: SO_0000988
location: 1..14159
location: region:1-14159:1
RO_0002162: 323848

NC_007617
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02598322
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Nitrosospira multiformis, an ammonia-oxidizing bacterium from the soil environment
author: Norton, J.M.
author: Klotz, M.G.
author: Stein, L.Y.
author: Arp, D.J.
author: Bottomley, P.J.
author: Chain, P.S.
author: Hauser, L.J.
author: Land, M.L.
author: Larimer, F.W.
author: Shin, M.W.
author: Starkenburg, S.R.
journal: Appl Environ Microbiol
volume: 74
issue: 11
pages: 3559-3572
year: 2008
pubmed: 18390676

18390676
type: PubMed
SIO_000068: pubmed

2
title: Complete sequence of Plasmid 3 of Nitrosospira multiformis ATCC 25196
author: Copeland, A.
author: Lucas, S.
author: Lapidus, A.
author: Barry, K.
author: Detter, J.C.
author: Glavina, T.
author: Hammon, N.
author: Israni, S.
author: Pitluck, S.
author: Chain, P.
author: Malfatti, S.
author: Shin, M.
author: Vergez, L.
author: Schmutz, J.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Lykidis, A.
author: Richardson, P.
journal: Unpublished

3
title: Direct Submission
author: Copeland, A.
author: Lucas, S.
author: Lapidus, A.
author: Barry, K.
author: Detter, J.C.
author: Glavina, T.
author: Hammon, N.
author: Israni, S.
author: Pitluck, S.
author: Chain, P.
author: Malfatti, S.
author: Shin, M.
author: Vergez, L.
author: Schmutz, J.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Lykidis, A.
author: Richardson, P.
journal: Submitted (08-AUG-2005) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14159:1
position: 14159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14159:1:source
so part of: sequence
organism: Nitrosospira multiformis ATCC 25196
mol type: genomic DNA
strain: ATCC 25196
culture collection: ATCC:25196
type material: type strain of Nitrosospira multiformis
plasmid: 3

25196
type: ATCC
SIO_000068: atcc

323848
type: Taxonomy
SIO_000068: taxonomy

NMUL_RS14660
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14660
so part of: sequence
location: complement(join(14159,1..653))
location: region:1-14159:-1
so has part: feature:1-653:-1:exon
so has part: feature:14159-14159:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14159:-1
position: 14159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-653:-1:exon

position:653:-1
position: 653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:14159-14159:-1:exon

NMUL_RS14660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14660
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008230311.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MENTSEDTFDNTKRTLIRRRLFQIGVETLEGDGWTVERIPKIGKGSVRRITKGKKSYITSIRTTQDTWIAFPPEGNKQWTTLSDVDKVIVISVDPDNSELARVHMIEGDDLRERFDRAFAARRAAGYSLPMGQGIWLPLYEPDAENPVTHVGGGAGIGTEIARVPLEQVQVSDKQLTASKINELNADDETLTISEAKRRLAMTFGVDPSNIKITVEG
SIO_010081: NMUL_RS14660
subclass of: SO_0000673
so part of: NMUL_RS14660
location: complement(join(14159,1..653))
location: region:1-14159:-1
so has part: feature:1-653:-1:exon
so has part: feature:14159-14159:-1:exon

WP_041353376.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-653:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14159-14159:-1:exon

NMUL_RS14665
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14665
old locus tag: Nmul_D2813
so part of: sequence
location: 890..1444
location: region:890-1444:1
so has part: feature:890-1444:1:exon
subclass of: SO_0000010

position:890:1
position: 890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1444:1
position: 1444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:890-1444:1:exon

NMUL_RS14665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14665
old locus tag: Nmul_D2813
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015916876.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MKIGYARVSTDDQNLDLQLDALTKAGCEQVFTDHGVSGATIEREGLSQAIAAVGKGDVLVVWKLDRLGRSLSFLIELIEKLRNEGAGFESLSDGIDTTTAGGKLVFHIMGALAEFERSLISERSKAGMQAARRRGKHIGRPHKLSREQISHAAQMIQEGRETVSGMAGLLSVDRATLYRALNRK
SIO_010081: NMUL_RS14665
subclass of: SO_0000673
so part of: NMUL_RS14665
location: 890..1444
location: region:890-1444:1
so has part: feature:890-1444:1:exon

WP_011382083.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:890-1444:1:exon

NMUL_RS14670
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14670
old locus tag: Nmul_D2814
so part of: sequence
location: complement(1517..1858)
location: region:1517-1858:-1
so has part: feature:1517-1858:-1:exon
subclass of: SO_0000010

position:1517:-1
position: 1517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1858:-1
position: 1858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1517-1858:-1:exon

NMUL_RS14670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14670
old locus tag: Nmul_D2814
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019939531.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MKKQKRIVEGIEAETSSGNIFADLGLPNAEKLKIKSALVIEITRAVRKRGLTQEEASRRMGIPQPKVSALLRGDFTGLSERKLMDCLNRLGYDIEIKVKPTTEPVGHLTLAIA
SIO_010081: NMUL_RS14670
subclass of: SO_0000673
so part of: NMUL_RS14670
location: complement(1517..1858)
location: region:1517-1858:-1
so has part: feature:1517-1858:-1:exon

WP_011382084.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1517-1858:-1:exon

NMUL_RS14675
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14675
old locus tag: Nmul_D2815
so part of: sequence
location: complement(1833..2219)
location: region:1833-2219:-1
so has part: feature:1833-2219:-1:exon
subclass of: SO_0000010

position:1833:-1
position: 1833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2219:-1
position: 2219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1833-2219:-1:exon

NMUL_RS14675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14675
old locus tag: Nmul_D2815
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011145550.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MTDEEEKSLVWIGSSKKDLMVFPTKVRKFFGHALDFAQHGDRHGAAKVLKGFSGAGVLEVVEDDAGGTYRAVYTVKFEEAVFVLHCFQKKSKSGITTPKEDIDIIRARLKVAEALAKELRHEKAKAHR
SIO_010081: NMUL_RS14675
subclass of: SO_0000673
so part of: NMUL_RS14675
location: complement(1833..2219)
location: region:1833-2219:-1
so has part: feature:1833-2219:-1:exon

WP_011382085.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1833-2219:-1:exon

NMUL_RS14680
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14680
old locus tag: Nmul_D2816
so part of: sequence
location: 2376..3008
location: region:2376-3008:1
so has part: feature:2376-3008:1:exon
subclass of: SO_0000010

position:2376:1
position: 2376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3008:1
position: 3008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2376-3008:1:exon

NMUL_RS14680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14680
old locus tag: Nmul_D2816
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011382086.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MAAIVAFVSQKGGVGKSTLSRALAREVAVGGLRVKVADLDTQQGTSVDWHRLRLSQGIEPIVSVEAFATAAQALEAAKGFDLLIIDGPARTSQATLDIAKAADLIVQPSGPSRDDLIPAVREFHALTKAGIPNERLAFALNRVGTSAEEVAARAYLEQAGYTVLAGTLRDRPAYRQAQNTGHSITETRFAGLNERADTLIQSLIDRVTNG
SIO_010081: NMUL_RS14680
subclass of: SO_0000673
so part of: NMUL_RS14680
location: 2376..3008
location: region:2376-3008:1
so has part: feature:2376-3008:1:exon

WP_011382086.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2376-3008:1:exon

NMUL_RS15545
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS15545
so part of: sequence
location: 3001..3315
location: region:3001-3315:1
so has part: feature:3001-3315:1:exon
subclass of: SO_0000010

position:3001:1
position: 3001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3315:1
position: 3315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3001-3315:1:exon

NMUL_RS15545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS15545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015042063.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MADVSKLKTLKGRRSNLGDPPSLDEASNNLNAPEIAPAPSLSSKALGGKIDGRTARRTNRTVQFATRVTPDWDARIRAIADREGIKLVEVLERALDYYELKSSR
SIO_010081: NMUL_RS15545
subclass of: SO_0000673
so part of: NMUL_RS15545
location: 3001..3315
location: region:3001-3315:1
so has part: feature:3001-3315:1:exon

WP_080557728.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3001-3315:1:exon

NMUL_RS14685
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14685
old locus tag: Nmul_D2817
so part of: sequence
location: 3427..4659
location: region:3427-4659:1
so has part: feature:3427-4659:1:exon
subclass of: SO_0000010

position:3427:1
position: 3427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4659:1
position: 4659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3427-4659:1:exon

NMUL_RS14685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14685
old locus tag: Nmul_D2817
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002943959.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MVSDKNDGPKSKVTMAYALELVEIEEQLAALERTNQRLQAMAERSSNNPDLERRRNEIIDKAAPLERRRQAIIAAEEAAAEVYVMHGETRSTPNLFSDIQPELGFLADIQSEVKKVEEDRSKKRERSKLLPARYTNQDFFVADILGYSLKDDHATMEAPVFSLKTQKDLTPWEWTSKDGTKHIEVSPSVKYGRATQHDKDILIFVTSQMTEALNRERPDTQSRAVRFTVHNYLVATNKPTGGVEYQRLERALDRLKGTTIKTDIKTGNKRVKEAFGILDSWAIIERSSSDERMIAVEITLSKWLYNAIHAHEVLTIHPDYFRLRKPLERRLYELARKHCGSKQSSWKIGLELLREKCGAQSHIRAFRNQVQEISNAHTLPEYHLIYEREADQVTFYVKNQQKLISSYLCR
SIO_010081: NMUL_RS14685
subclass of: SO_0000673
so part of: NMUL_RS14685
location: 3427..4659
location: region:3427-4659:1
so has part: feature:3427-4659:1:exon

WP_011382087.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3427-4659:1:exon

NMUL_RS14695
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14695
old locus tag: Nmul_D2818
so part of: sequence
location: complement(5821..6252)
location: region:5821-6252:-1
so has part: feature:5821-6252:-1:exon
subclass of: SO_0000010

position:5821:-1
position: 5821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6252:-1
position: 6252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5821-6252:-1:exon

NMUL_RS14695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14695
old locus tag: Nmul_D2818
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003379475.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraD
translation: MQDEWLKGRLAYLRGLKHPTDHQRLLLLLADKPDRTPEDERKLLALVRAEKAAERAQKARANAARIVNAEKLATRKARDRELYNAAGLMILAGLVDSKTGMPLLDRGELLGALMELSRVAPEDERKAQWKRKGDALLAEKMKG
SIO_010081: NMUL_RS14695
subclass of: SO_0000673
so part of: NMUL_RS14695
location: complement(5821..6252)
location: region:5821-6252:-1
so has part: feature:5821-6252:-1:exon

WP_011382088.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5821-6252:-1:exon

NMUL_RS15100
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS15100
old locus tag: Nmul_D2819
so part of: sequence
location: 6452..8053
location: region:6452-8053:1
so has part: feature:6452-8053:1:exon
subclass of: SO_0000010

position:6452:1
position: 6452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8053:1
position: 8053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6452-8053:1:exon

NMUL_RS15100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS15100
old locus tag: Nmul_D2819
inference: COORDINATES: protein motif:HMM:NF015354.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobA/MobL family protein
translation: MAIARLSMKVGKAGRACPHAAYIVRAGQHARHLSRGERLEAVEAGNLPAWAQHDPLLFWQMADAYERSNGTTYREMEIALPRELDAGQRAALVRAFVAQEIGGRHAYQWAIHTPIAADGQAQPHVHLMFSERQVDGIERDPEQYFKRYNARNPEKGGARKGYGPRAGQTLSRAERAADLKELRARWQEMANTHLEQLGHSARIDMRSHAERGTGLLPEKKQLPSQWRGEGRGNIIEFRQARAALVQAHEHMQQAVPDAKAEVISLEAERERRIRDREERSQAERLRIERMTSRELKAEIERLRPLSIKAAVDRHPEVMAARKIHASLSYQMRQAQEKMQRATLQMHDWRRAHPLRARTHDLGLIPSSYLIEREQTREEARLRAEDLKPGVDDARRRAEDIAADIGQRMEIEQKPVREQVAKLERIWQQKANQELEVLRQAKKLDWAISEFKSHAISRALKVPSYSDTGTQWKALPESAREAIDRFNTLPKDERARELERMREYFRQQGPKAVEGLVQEMSQGKSRNRGQGWEL
SIO_010081: NMUL_RS15100
subclass of: SO_0000673
so part of: NMUL_RS15100
location: 6452..8053
location: region:6452-8053:1
so has part: feature:6452-8053:1:exon

WP_011382089.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6452-8053:1:exon

NMUL_RS15550
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS15550
old locus tag: Nmul_D2825
so part of: sequence
location: complement(8117..9049)
location: region:8117-9049:-1
so has part: feature:8117-9049:-1:exon
subclass of: SO_0000010

position:8117:-1
position: 8117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9049:-1
position: 9049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8117-9049:-1:exon

NMUL_RS15550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS15550
old locus tag: Nmul_D2825
EC number: 3.4.21.-
inference: COORDINATES: protein motif:HMM:NF012318.2
GO function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO process: GO:0006508 - proteolysis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: trypsin-like serine protease
translation: MNQRFGCTSAGCTGKEESFDPMEAHRRLADKFNALGSLLTSYMNEAPLDRALRNNHAIQLALATARIIGGTPVSKGEYKDCCLIGESLPNGIVQWNCTGVLVHPQIVLTAAHCHQPPRVTASVVALSCESMNHLKDAEVIPAKISVAHPKYLQTGLHDISVIILKKPATTPPCPLATTNELKSSQQLSLVGFGNSDVYSTRGFGEKRHVQVDIIGIRKDPNDDLDALEIKYGFESDVEILAGGLGFDSCNGDSGGPAYIDLGPQRKVAALTSRAFRGASKPCGDGGIYTRTDVELDFISHVAGSYSISLN
SIO_010081: NMUL_RS15550
subclass of: SO_0000673
so part of: NMUL_RS15550
location: complement(8117..9049)
location: region:8117-9049:-1
so has part: feature:8117-9049:-1:exon

WP_104009788.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8117-9049:-1:exon

NMUL_RS14710
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14710
so part of: sequence
location: complement(9065..9358)
location: region:9065-9358:-1
so has part: feature:9065-9358:-1:exon
subclass of: SO_0000010

position:9065:-1
position: 9065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9358:-1
position: 9358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9065-9358:-1:exon

NMUL_RS14710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14710
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNRDIQQLDRIRALVEESPIDAQEKKPILEKIEELKSPLETDKWIYRIVVSALSAAIILIFPLAMFASEEFIKLLLPLSTAAVGGLVGLLAPSPGRQ
SIO_010081: NMUL_RS14710
subclass of: SO_0000673
so part of: NMUL_RS14710
location: complement(9065..9358)
location: region:9065-9358:-1
so has part: feature:9065-9358:-1:exon

WP_041353379.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9065-9358:-1:exon

NMUL_RS14715
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14715
old locus tag: Nmul_D2826
so part of: sequence
location: complement(9505..10194)
location: region:9505-10194:-1
so has part: feature:9505-10194:-1:exon
subclass of: SO_0000010

position:9505:-1
position: 9505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10194:-1
position: 10194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9505-10194:-1:exon

NMUL_RS14715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14715
old locus tag: Nmul_D2826
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MARFMGSTSKEKKKKAISTAGKKLDEVVTNLVLLEFQSSVTTAQSGPVAGDSLGLIQNGDSTLSPEVVAQIHANFLDDDASGTLIDACVVALDRNRTGGAPDEELAKLISKTRAKVLDQIAEVERNRNQRSNQTSNQTELASAKKQLEYLVSLQPPSLGSICASMLKNDDLQNNFLLKLQEHKLHGRIMRAKLLTKQTLLRNCFESTKDIEDKLVRIDKYMVCVSKELK
SIO_010081: NMUL_RS14715
subclass of: SO_0000673
so part of: NMUL_RS14715
location: complement(9505..10194)
location: region:9505-10194:-1
so has part: feature:9505-10194:-1:exon

WP_011382094.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9505-10194:-1:exon

NMUL_RS14725
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14725
old locus tag: Nmul_D2821
so part of: sequence
location: 10236..11356
location: region:10236-11356:1
so has part: feature:10236-11356:1:exon
subclass of: SO_0000010

position:10236:1
position: 10236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11356:1
position: 11356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10236-11356:1:exon

NMUL_RS14725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14725
old locus tag: Nmul_D2821
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611479.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3-like element ISNmu2 family transposase
translation: MKKRFTDEQIIGFLKQADGGIPVRELCRQHGFSDASFYTWRARFGGMTVSDARRLRDLEAENAQLKKLLAESLLDAQALKVALGRKPLTPQARREAVMAMLEQTNVSERRACLLVDISRTVLHYMSKVRLENEQLQGRMVELASERRRFGYRRIHALLRREGVEANHKRIFRLYQAAGLAVKRRRRRGGVAVEREQLALPSQPNEVWSMDFICDALANGRRIKVLTIVDDFTKESIDLVAEHGISGQHVVRVLEQASQFRGLPLAIRTDQGPEFTSKALDQWAYKHGVQLKLIEAGKPTQNAYIESFNGRFRDECLNDHWFTSLAEARIRISAWRRDYNEHRPHSALNYLTPAEFAANCRRQEEINGCERNGS
SIO_010081: NMUL_RS14725
subclass of: SO_0000673
so part of: NMUL_RS14725
location: join(10236..10494,10494..11356)
location: region:10236-11356:1
so has part: feature:10236-10494:1:exon
so has part: feature:10494-11356:1:exon

WP_104009797.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10236-10494:1:exon

position:10494:1
position: 10494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10494-11356:1:exon

NMUL_RS14730
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14730
old locus tag: Nmul_D2827
so part of: sequence
location: complement(11394..12149)
location: region:11394-12149:-1
so has part: feature:11394-12149:-1:exon
subclass of: SO_0000010

position:11394:-1
position: 11394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12149:-1
position: 12149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11394-12149:-1:exon

NMUL_RS14730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14730
old locus tag: Nmul_D2827
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIGLIICLVPLLSTGCAFLDRQERRINYTEALDSNNTPGGNPSLITDAKQRAIINTKADVGIRRSSGKSDGSSDTSSANTDHVIKNHPTRIICAEPSPDVAQAISAAFTAAAKVDIKASEIKNISGSGSVGSSYASSIAQLGARLSTVQLLRDKMYRACEAFQNGAISDTSYTLMLARFDKTMASMLASEIAAGAFGQKLAALGSSASTKGTDPKKLDEARVAVKDASQQLQEAVELPETDDQAKVMCPR
SIO_010081: NMUL_RS14730
subclass of: SO_0000673
so part of: NMUL_RS14730
location: complement(11394..12149)
location: region:11394-12149:-1
so has part: feature:11394-12149:-1:exon

WP_011382095.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11394-12149:-1:exon

NMUL_RS14735
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14735
old locus tag: Nmul_D2824
so part of: sequence
location: 12615..12950
location: region:12615-12950:1
so has part: feature:12615-12950:1:exon
subclass of: SO_0000010

position:12615:1
position: 12615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12950:1
position: 12950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12615-12950:1:exon

NMUL_RS14735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14735
old locus tag: Nmul_D2824
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012645680.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MTTIRQDHVTFGSYIAEARKKLSMSQKELAARILREEDGQPISPQYLNDIERDRRSPTSDHLIQQFAKVLQIDADYLHYLSGKLPEEIRQRNLSQDDVKAAFMAFRKPNKK
SIO_010081: NMUL_RS14735
subclass of: SO_0000673
so part of: NMUL_RS14735
location: 12615..12950
location: region:12615-12950:1
so has part: feature:12615-12950:1:exon

WP_011382092.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12615-12950:1:exon

NMUL_RS14740
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14740
old locus tag: Nmul_D2822
so part of: sequence
location: 12958..13674
location: region:12958-13674:1
so has part: feature:12958-13674:1:exon
subclass of: SO_0000010

position:12958:1
position: 12958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13674:1
position: 13674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12958-13674:1:exon

NMUL_RS14740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14740
old locus tag: Nmul_D2822
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012177087.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ImmA/IrrE family metallo-endopeptidase
translation: MVAYIRDLTGRFQQRPHYKPEELDRECESIITGFLKSLYGNVRYPVETEDLKKLIERDADDLDVYADLSIYGAEVEGVTEFYPGRKPIVRIAAELTEDERRENRLRTTLTHEYGHVHFHAYLWEMEPLQADLLRRQPNRDKIICKRDTMIDATHTDWMEWQAGYVCGAILMPKTAVVGLCRSFVEQRGLYSAVSTRTYHGQDLIASVISSFQVSEDAARVRLIKLGLLTESVSTPSLF
SIO_010081: NMUL_RS14740
subclass of: SO_0000673
so part of: NMUL_RS14740
location: 12958..13674
location: region:12958-13674:1
so has part: feature:12958-13674:1:exon

WP_011382090.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12958-13674:1:exon

NMUL_RS14745
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14745
old locus tag: Nmul_D2823
so part of: sequence
location: 13799..14086
location: region:13799-14086:1
so has part: feature:13799-14086:1:exon
subclass of: SO_0000010

position:13799:1
position: 13799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14086:1
position: 14086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13799-14086:1:exon

NMUL_RS14745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14745
old locus tag: Nmul_D2823
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006787576.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3892 domain-containing protein
translation: MATKHEVKCINKTDRPNPHERIRAIGGVNADGTNWKLSQQDAIRGIEDGKWSFYVSVRGQIVNVIIGISRYGNKYLKTEADGEQPNNLLSLYECA
SIO_010081: NMUL_RS14745
subclass of: SO_0000673
so part of: NMUL_RS14745
location: 13799..14086
location: region:13799-14086:1
so has part: feature:13799-14086:1:exon

WP_011382091.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13799-14086:1:exon