Nitrosospira multiformis ATCC 25196 plasmid 3, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.
Complete genome sequence of Nitrosospira multiformis, an ammonia-oxidizing bacterium from the soil environment
Complete sequence of Plasmid 3 of Nitrosospira multiformis ATCC 25196
Submitted (08-AUG-2005) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP000106.1.\nURL -- http://www.jgi.doe.gov\nSource DNA available from Dan Arp (arpd@bcc.orst.edu)\nBacteria available from ATCC: ATCC 25196\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LLNL\nQuality assurance done by JGI-Stanford\nAnnotation done by JGI-ORNL and JGI-PGF\nContacts: Paul Richardson (microbes@cuba.jgi-psf.org)\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/10/2023 13:45:37\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,908\nCDSs (total) :: 2,858\nGenes (coding) :: 2,817\nCDSs (with protein) :: 2,817\nGenes (RNA) :: 50\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 4\nPseudo Genes (total) :: 41\nCDSs (without protein) :: 41\nPseudo Genes (ambiguous residues) :: 0 of 41\nPseudo Genes (frameshifted) :: 22 of 41\nPseudo Genes (incomplete) :: 25 of 41\nPseudo Genes (internal stop) :: 6 of 41\nPseudo Genes (multiple problems) :: 10 of 41\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008230311.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015916876.1
COORDINATES: similar to AA sequence:RefSeq:WP_019939531.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011145550.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011382086.1
COORDINATES: similar to AA sequence:RefSeq:WP_015042063.1
COORDINATES: similar to AA sequence:RefSeq:WP_002943959.1
COORDINATES: similar to AA sequence:RefSeq:WP_003379475.1
COORDINATES: protein motif:HMM:NF015354.2
COORDINATES: protein motif:HMM:NF012318.2
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_076611479.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS3-like element ISNmu2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012645680.1
COORDINATES: similar to AA sequence:RefSeq:WP_012177087.1
COORDINATES: similar to AA sequence:RefSeq:WP_006787576.1