Nitrosospira multiformis ATCC 25196 plasmid 2, complete sequence.
type: Entry
definition: Nitrosospira multiformis ATCC 25196 plasmid 2, complete sequence.
sequence version: NC_007616.1
sequence date: 2023-08-02
sequence: sequence
division: CON
label: NC_007616.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02598322
keyword: RefSeq
source: Nitrosospira multiformis ATCC 25196
organism: Nitrosospira multiformis ATCC 25196
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.
reference: 1
references: 18390676
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP000105.1.\nURL -- http://www.jgi.doe.gov\nSource DNA available from Dan Arp (arpd@bcc.orst.edu)\nBacteria available from ATCC: ATCC 25196\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LLNL\nQuality assurance done by JGI-Stanford\nAnnotation done by JGI-ORNL and JGI-PGF\nContacts: Paul Richardson (microbes@cuba.jgi-psf.org)\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/10/2023 13:45:37\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,908\nCDSs (total) :: 2,858\nGenes (coding) :: 2,817\nCDSs (with protein) :: 2,817\nGenes (RNA) :: 50\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 4\nPseudo Genes (total) :: 41\nCDSs (without protein) :: 41\nPseudo Genes (ambiguous residues) :: 0 of 41\nPseudo Genes (frameshifted) :: 22 of 41\nPseudo Genes (incomplete) :: 25 of 41\nPseudo Genes (internal stop) :: 6 of 41\nPseudo Genes (multiple problems) :: 10 of 41\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 17036
topology: circular
so has quality: SO_0000988
location: 1..17036
location: region:1-17036:1
RO_0002162: 323848

NC_007616
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02598322
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Nitrosospira multiformis, an ammonia-oxidizing bacterium from the soil environment
author: Norton, J.M.
author: Klotz, M.G.
author: Stein, L.Y.
author: Arp, D.J.
author: Bottomley, P.J.
author: Chain, P.S.
author: Hauser, L.J.
author: Land, M.L.
author: Larimer, F.W.
author: Shin, M.W.
author: Starkenburg, S.R.
journal: Appl Environ Microbiol
volume: 74
issue: 11
pages: 3559-3572
year: 2008
pubmed: 18390676

18390676
type: PubMed
SIO_000068: pubmed

2
title: Complete sequence of Plasmid 2 of Nitrosospira multiformis ATCC 25196
author: Copeland, A.
author: Lucas, S.
author: Lapidus, A.
author: Barry, K.
author: Detter, J.C.
author: Glavina, T.
author: Hammon, N.
author: Israni, S.
author: Pitluck, S.
author: Chain, P.
author: Malfatti, S.
author: Shin, M.
author: Vergez, L.
author: Schmutz, J.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Lykidis, A.
author: Richardson, P.
journal: Unpublished

3
title: Direct Submission
author: Copeland, A.
author: Lucas, S.
author: Lapidus, A.
author: Barry, K.
author: Detter, J.C.
author: Glavina, T.
author: Hammon, N.
author: Israni, S.
author: Pitluck, S.
author: Chain, P.
author: Malfatti, S.
author: Shin, M.
author: Vergez, L.
author: Schmutz, J.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Lykidis, A.
author: Richardson, P.
journal: Submitted (08-AUG-2005) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17036:1
position: 17036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17036:1:source
so part of: sequence
organism: Nitrosospira multiformis ATCC 25196
mol type: genomic DNA
strain: ATCC 25196
culture collection: ATCC:25196
type material: type strain of Nitrosospira multiformis
plasmid: 2

25196
type: ATCC
SIO_000068: atcc

323848
type: Taxonomy
SIO_000068: taxonomy

NMUL_RS15095
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS15095
so part of: sequence
location: complement(join(16723..17036,1..256))
location: region:1-17036:-1
so has part: feature:1-256:-1:exon
so has part: feature:16723-17036:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17036:-1
position: 17036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-256:-1:exon

position:256:-1
position: 256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:16723-17036:-1:exon

position:16723:-1
position: 16723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NMUL_RS15095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS15095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012337255.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MKIGYARVSTDDQNLDLQMDALSRVGCERIFTDQGVSGATIEREGLSQAIAAVEKGDVLVVWKLDRLGRSLSFLISLIEKLRNEGAGFESLSDGIDTTTAGGKLVFHIMGALAEFERSLISERSKAGMQAARRRGKHVGRPGKLSQEQINHAAQMVREGRETVSGMAGLLNVDRGTLRRALKANKLYSF
SIO_010081: NMUL_RS15095
subclass of: SO_0000673
so part of: NMUL_RS15095
location: complement(join(16723..17036,1..256))
location: region:1-17036:-1
so has part: feature:1-256:-1:exon
so has part: feature:16723-17036:-1:exon

WP_049783192.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-256:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:16723-17036:-1:exon

NMUL_RS14575
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14575
old locus tag: NmulC_2780
so part of: sequence
location: 673..1593
location: region:673-1593:1
so has part: feature:673-1593:1:exon
subclass of: SO_0000010

position:673:1
position: 673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1593:1
position: 1593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:673-1593:1:exon

NMUL_RS14575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14575
old locus tag: NmulC_2780
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013395736.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Abi family protein
translation: MPKTLRYRPILIDQLITNERINSYQSVFQPSNDIELMGVYLWNAHVCGVIYPIIGMAEITLRNAIDQALQVHLGNFWWRNSSLRYRSFKPGALPPKAVQAVRDNFKRATNKFITTKRHRYNITGHVSLNHSGIVAQTEFSTWEYMLDHEFMGNKLIWPSRLGTVFAGPWPSTHAGIVLTHASDLVSTVREFRNRLSHHEPAWKRFGIVKEADALLHLQEKITKIENLIALIHPENIKLIERNGLLEMARRACTSQEIRRFQHMTETYKVNSMDKLQILVDRCRTENSILRAELDLGAQQMFLISPC
SIO_010081: NMUL_RS14575
subclass of: SO_0000673
so part of: NMUL_RS14575
location: 673..1593
location: region:673-1593:1
so has part: feature:673-1593:1:exon

WP_011382069.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:673-1593:1:exon

NMUL_RS14580
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14580
old locus tag: NmulC_2781
so part of: sequence
location: complement(1653..2528)
location: region:1653-2528:-1
so has part: feature:1653-2528:-1:exon
subclass of: SO_0000010

position:1653:-1
position: 1653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2528:-1
position: 2528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1653-2528:-1:exon

NMUL_RS14580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14580
old locus tag: NmulC_2781
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011547008.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ImmA/IrrE family metallo-endopeptidase
translation: MSDPTTPAAWANQFASLWMVCGQGFPVDVKEIALEVTKTRFSDPVGLVRAHGIQGIDGILSKRKRGDWCISYDETITVPGRINFTLGHEFGHYLLHRKIREEGFQCGQAEMLDYESPESRKFESEANKFASYLLMPATDFRSQIEGQVVTLDLLGHCANRYGTSFTATALKWVELTDQPALLAMARDGFICWSYPSRRARLLRTYLPPGTPVPQSSLRRLNSAADINRRNQGSRVPPGVWHPELEAEEFVIISDHFDLAIFLVRFPYAGMVEQAEEKDWDAFTFFENRAQG
SIO_010081: NMUL_RS14580
subclass of: SO_0000673
so part of: NMUL_RS14580
location: complement(1653..2528)
location: region:1653-2528:-1
so has part: feature:1653-2528:-1:exon

WP_011382070.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1653-2528:-1:exon

NMUL_RS14585
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14585
old locus tag: NmulC_2782
so part of: sequence
location: complement(2521..2841)
location: region:2521-2841:-1
so has part: feature:2521-2841:-1:exon
subclass of: SO_0000010

position:2521:-1
position: 2521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2841:-1
position: 2841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2521-2841:-1:exon

NMUL_RS14585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14585
old locus tag: NmulC_2782
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011547009.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MASLLGEKIRTERKRLKLTLEELAEKTGSSKSYIWELENRPVVRPSAEKISKISEVFGVPVEFLLDDAKHELTPSDADQVFFRRITQLDPAKRAQLEKFLKAIDDE
SIO_010081: NMUL_RS14585
subclass of: SO_0000673
so part of: NMUL_RS14585
location: complement(2521..2841)
location: region:2521-2841:-1
so has part: feature:2521-2841:-1:exon

WP_011382071.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2521-2841:-1:exon

NMUL_RS16435
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS16435
so part of: sequence
location: 2992..3171
location: region:2992-3171:1
so has part: feature:2992-3171:1:exon
subclass of: SO_0000010

position:2992:1
position: 2992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3171:1
position: 3171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2992-3171:1:exon

NMUL_RS16435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS16435
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001085430.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGMKPGSSTGNGGGIFQQVGPKGGKQPNFATVPDHKPLPPTTKPGHTWVPVQTTPDSKR
SIO_010081: NMUL_RS16435
subclass of: SO_0000673
so part of: NMUL_RS16435
location: 2992..3171
location: region:2992-3171:1
so has part: feature:2992-3171:1:exon

WP_080557726.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2992-3171:1:exon

NMUL_RS15540
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS15540
so part of: sequence
location: 3206..3430
location: region:3206-3430:1
so has part: feature:3206-3430:1:exon
subclass of: SO_0000010

position:3206:1
position: 3206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3430:1
position: 3430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3206-3430:1:exon

NMUL_RS15540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS15540
inference: COORDINATES: protein motif:HMM:NF024431.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3892 domain-containing protein
translation: MPDVQVTCIIKPHPQSPHEYITHLGNGRTWLWTREQVIDSIDAKTNTFYVLDPSNSKRSNVGVVRENGKAPYLR
SIO_010081: NMUL_RS15540
subclass of: SO_0000673
so part of: NMUL_RS15540
location: 3206..3430
location: region:3206-3430:1
so has part: feature:3206-3430:1:exon

WP_080557727.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3206-3430:1:exon

NMUL_RS14590
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14590
old locus tag: NmulC_2783
so part of: sequence
location: complement(3476..4557)
location: region:3476-4557:-1
so has part: feature:3476-4557:-1:exon
subclass of: SO_0000010

position:3476:-1
position: 3476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4557:-1
position: 4557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3476-4557:-1:exon

NMUL_RS14590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14590
old locus tag: NmulC_2783
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611458.1
ribosomal slippage: true
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MKKRFSEEQIIGILREGEADGVVIRDVCRKHNITEQTFFRWRTKFGGMTVSDARRLKDLESENAKLKKIVAEQMLAIEGLKEIANKKMVTPAARREALGILTGKGLSQRSACRIVGVSRRIGSYEVKQPVKDRAVATRIIEASSRYPRFGYRRIAVMTDQSMGRVWRLWGKLGLSLPRRRPRKRRCGTDIRLPGATKPNSVWTYDFVHDRLANGQTLKLLCVLDEHTRECLAIEVGKSLRNQDVILTLSRLMRIYGKPAFIRSDNGAEFTATAVMTWLRDNNVGPAFIKPGSPWQNGFVESFNGKLRDECLNREWFITRQEAKVLIEKWRQFYNNERPHSALANRTPAQAGLQRLQIQNV
SIO_010081: NMUL_RS14590
subclass of: SO_0000673
so part of: NMUL_RS14590
location: complement(join(3476..4305,4305..4557))
location: region:3476-4557:-1
so has part: feature:4305-4557:-1:exon
so has part: feature:3476-4305:-1:exon

WP_104009798.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4305-4557:-1:exon

position:4305:-1
position: 4305
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3476-4305:-1:exon

NMUL_RS14600
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14600
old locus tag: NmulC_2785
so part of: sequence
location: complement(5108..6079)
location: region:5108-6079:-1
so has part: feature:5108-6079:-1:exon
subclass of: SO_0000010

position:5108:-1
position: 5108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6079:-1
position: 6079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5108-6079:-1:exon

NMUL_RS14600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14600
old locus tag: NmulC_2785
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001064713.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO process: GO:0009307 - DNA restriction-modification system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BsuBI/PstI family type II restriction endonuclease
translation: MTNGNHLEDAQNIILALGLPRAQQNERSALCLLALLNLTPEKSWNEVQNPLMGITPIMDWAREHYRKDYAPNTRETVRRQTMHQFVDAGIALYNPDNPLRPVNSPKAVYQIEPEALVLLRSFGTDMWHDNLMTYLSKRQSLAEKYAMEREQNRIPVEIAPGKKITLSPGEHSELIRKIIEDFAPRFAPGSVLVYAGDTGEKWGYFDAPLLAELGVSVDSHGKMPDVVLHFTERNWLLLVESVTSHGPVDGKRHAELSKLFAGSKAGLVYVTAFPNRSIMGRYLGEIAWETEVWVADAPSHLIHFNGIRFLGPYQQTENSKASK
SIO_010081: NMUL_RS14600
subclass of: SO_0000673
so part of: NMUL_RS14600
location: complement(5108..6079)
location: region:5108-6079:-1
so has part: feature:5108-6079:-1:exon

WP_011382072.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5108-6079:-1:exon

NMUL_RS14605
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14605
old locus tag: NmulC_2786
so part of: sequence
location: complement(6076..7590)
location: region:6076-7590:-1
so has part: feature:6076-7590:-1:exon
subclass of: SO_0000010

position:6076:-1
position: 6076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7590:-1
position: 7590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6076-7590:-1:exon

NMUL_RS14605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14605
old locus tag: NmulC_2786
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000939560.1
GO function: GO:0003824 - catalytic activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Eco57I restriction-modification methylase domain-containing protein
translation: MAYTDTLEVPATLQVLDHADTLRRSIAPKISQKHKSELGQFMTPSSVARFMASLFPPSTLQTCRLLDAGAGVGALSCAFLDRWTAGKFTFDQVEATAYEIDPKLRVHLEAALHRYAADQSFSYRVIKGDFIKLVTSKSLQDYPGFTHAILNPPYRKINSASSHRHALRSVGIEVVNLYSAFVALTVALMAAGGQVVAIIPRSFCNGPYYKPFRDFILSRAALRHMHLFSSRSKAFKEDDVLQENVILLLERGGKQSTVTISTSTDDTFSDLETNTHNFERIVFPDDPERFIHIPTSIGLSAIELSPAVRYSLADIGVEVSTGPVVDFRMKDYLLDMPEAGSVPLLYPGHFSGTGTEWPKQGLRKPNAIALNKDTERWLYPNGFYCVVRRFSSKEERRRIVASMVDPSTFGDVTAIGFENHLNVFHKGRQGLPAELARGLSVFLNTTAVDEYFRRFNGHTQVNATDLRVMKYPSRAALVSLGKWAAGRFELSQDQIDEQLEKLCS
SIO_010081: NMUL_RS14605
subclass of: SO_0000673
so part of: NMUL_RS14605
location: complement(6076..7590)
location: region:6076-7590:-1
so has part: feature:6076-7590:-1:exon

WP_011382073.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6076-7590:-1:exon

NMUL_RS14610
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14610
old locus tag: NmulC_2787
so part of: sequence
location: complement(7748..8062)
location: region:7748-8062:-1
so has part: feature:7748-8062:-1:exon
subclass of: SO_0000010

position:7748:-1
position: 7748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8062:-1
position: 8062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7748-8062:-1:exon

NMUL_RS14610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14610
old locus tag: NmulC_2787
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKPSPLAAGLKAMAAGQVQKQPEPIQHVSPHQSEAKPVTPVANKKAADKTVMIGAHFSPQVRRALLLVQAHPNNEGKLTKELLGEAINDLCAKYGVPEPYRGE
SIO_010081: NMUL_RS14610
subclass of: SO_0000673
so part of: NMUL_RS14610
location: complement(7748..8062)
location: region:7748-8062:-1
so has part: feature:7748-8062:-1:exon

WP_011382074.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7748-8062:-1:exon

NMUL_RS14615
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14615
old locus tag: NmulC_2788
so part of: sequence
location: complement(8049..8699)
location: region:8049-8699:-1
so has part: feature:8049-8699:-1:exon
subclass of: SO_0000010

position:8049:-1
position: 8049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8699:-1
position: 8699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8049-8699:-1:exon

NMUL_RS14615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14615
old locus tag: NmulC_2788
inference: COORDINATES: protein motif:HMM:NF018691.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MKTLAIIGQKGGNGKTTTALGLAVAGVLDGKSVAVIDLDPQTTAANWGDRRESEHPAVVSCQVSRLRNVLTGAKEQGAELVIIDTAGKSTEATIEAAKVADIVLLPIRPQLFDIETLLNVKDILTLAGNPTALVVINAAPVQGRRHLDTMEAIEGMGLKVCPVVLYQRTAYGDATNLGQTALEYDPGGKAALELSELYKYINIALYKYKDIHHEKA
SIO_010081: NMUL_RS14615
subclass of: SO_0000673
so part of: NMUL_RS14615
location: complement(8049..8699)
location: region:8049-8699:-1
so has part: feature:8049-8699:-1:exon

WP_011382075.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8049-8699:-1:exon

NMUL_RS14620
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14620
old locus tag: NmulC_2789
so part of: sequence
location: 9175..10275
location: region:9175-10275:1
so has part: feature:9175-10275:1:exon
subclass of: SO_0000010

position:9175:1
position: 9175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10275:1
position: 10275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9175-10275:1:exon

NMUL_RS14620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14620
old locus tag: NmulC_2789
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010511350.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MKPRSYDGRQRNHESIMSVNETTNIKKNERSVLLPERHPNHELFICDVLEAIPKDDLASMEHPVFSLATKPDTRTLIYEHRDVKIQITPSVKGLATIFDKDLLIFCISQMIAKKNRGEPLSQNVRLHAYDLLIWTNRETSGDAYRRLIEAFERLRGTTIVTNIKADGEEITTGFGLIDSFKVVRHTATGRMSELEVRISDWMFKIIQGSQVLTLSRDYFRLRKPIERRIYEIARKHCGEQDEWRISIELLQKKTGASSHERAFKAMVRELVKCDHLPDYSVTLEDDMVIFYNRAGLSEKIPLTAFPQLNAETYNDARTVAPGYDVYYLEQEWRDMWVDTGMPLLHNPDKAFIAFCKSRAKRRPMGR
SIO_010081: NMUL_RS14620
subclass of: SO_0000673
so part of: NMUL_RS14620
location: 9175..10275
location: region:9175-10275:1
so has part: feature:9175-10275:1:exon

WP_041353370.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9175-10275:1:exon

NMUL_RS14625
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14625
old locus tag: NmulC_2790
so part of: sequence
location: complement(10306..11979)
location: region:10306-11979:-1
so has part: feature:10306-11979:-1:exon
subclass of: SO_0000010

position:10306:-1
position: 10306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11979:-1
position: 11979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10306-11979:-1:exon

NMUL_RS14625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14625
old locus tag: NmulC_2790
inference: COORDINATES: protein motif:HMM:NF015397.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MTPNAAKKGRSFKGAVAYIIHDPDGAKTAERVLFTETRNLRTDDPEKAAKVMAYTAQHAAELKEAAGIKATGRKPGPPVYHLSLSWVPGEKPTQAEMMEAGTAILEKLGYGEHEAVFAAHGDKAHMHLHIIVNRVNPVTGISHNPKDDHKILHSWGHEYDKARGMEHHSPERAAKYEKDPEKKAEYRRMAEEARQHKGTANSKARADWEAAAGATHPKSKRYLDIKAEFAERIKNLARKGRDNAVRHSAQWEEIKARQANERAALWDKQCQAFKIRQGFNKASKAGEYSWQKYQADRAKLKKRHEDQMRALRARLKEENVPEVSFFMATQKEKRREFYKMNRTGGWAVLLATLEATIKTPLSEHGNHHRGHLSRFFTALVAKDARAAMFAKRLNSEKEAFFKKLDERNLPAFQRLWAKQNTELDELRTKYAEARDLAKKHAVQKIEAAKETDKQARTLLAARHKTERQDLKRQQAEETGELRKEWAALNADRRTAWDSYKKLRATQAERQKEDKSVSLADRYNNRASLFESYESNNSTEEKLAHGQARPEPYRDRGR
SIO_010081: NMUL_RS14625
subclass of: SO_0000673
so part of: NMUL_RS14625
location: complement(10306..11979)
location: region:10306-11979:-1
so has part: feature:10306-11979:-1:exon

WP_011382077.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10306-11979:-1:exon

NMUL_RS14630
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
gene: mobC
locus tag: NMUL_RS14630
old locus tag: NmulC_2791
so part of: sequence
location: complement(11976..12308)
location: region:11976-12308:-1
so has part: feature:11976-12308:-1:exon
subclass of: SO_0000010

position:11976:-1
position: 11976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12308:-1
position: 12308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11976-12308:-1:exon

NMUL_RS14630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
gene: mobC
locus tag: NMUL_RS14630
old locus tag: NmulC_2791
inference: COORDINATES: protein motif:HMM:NF017524.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MARPRKQQPESRSERLNLRLLPDERATIEARAAASGLTPTDYARRRALGGKLAAAPRRADPALVLAVNRAGVNLNQIARALNSGLGHSPHELSETLARLNQLLDRLQDVE
SIO_010081: NMUL_RS14630
subclass of: SO_0000673
so part of: NMUL_RS14630
location: complement(11976..12308)
location: region:11976-12308:-1
so has part: feature:11976-12308:-1:exon

WP_011382078.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11976-12308:-1:exon

NMUL_RS15850
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS15850
so part of: sequence
location: 12870..13343
location: region:12870-13343:1
so has part: feature:12870-13343:1:exon
subclass of: SO_0000010

position:12870:1
position: 12870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13343:1
position: 13343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12870-13343:1:exon

NMUL_RS15850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS15850
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MATTDSGDLPKGQANEGNRGKPSEPGQYNPHQGSDLAVAQTLLPTGPTATHRNDEQKSKIPEGVRKDGQNLTLEMRTPMGSDVRRQAAYSQAAKDYNAANKKRVEKYFGDSNKGPLVTSRDIKDKSVIERREPTRGSLSNELSKASGFETGSKDLER
SIO_010081: NMUL_RS15850
subclass of: SO_0000673
so part of: NMUL_RS15850
location: 12870..13343
location: region:12870-13343:1
so has part: feature:12870-13343:1:exon

WP_146063228.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12870-13343:1:exon

NMUL_RS14640
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14640
old locus tag: NmulC_2792
so part of: sequence
location: 13350..13661
location: region:13350-13661:1
so has part: feature:13350-13661:1:exon
subclass of: SO_0000010

position:13350:1
position: 13350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13661:1
position: 13661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13350-13661:1:exon

NMUL_RS14640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14640
old locus tag: NmulC_2792
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKYSLPHDQMHSRVITAPDGIDHLITMGGWYWNSLDWMHNETDWKNIDFIELAWKTAKQMENDGTMENPGNLPAEFQLAFKYHIWFRMKDLINKEDGIVNDNI
SIO_010081: NMUL_RS14640
subclass of: SO_0000673
so part of: NMUL_RS14640
location: 13350..13661
location: region:13350-13661:1
so has part: feature:13350-13661:1:exon

WP_011382079.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13350-13661:1:exon

NMUL_RS14645
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14645
old locus tag: NmulC_2793
so part of: sequence
location: 13678..15663
location: region:13678-15663:1
so has part: feature:13678-15663:1:exon
subclass of: SO_0000010

position:13678:1
position: 13678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15663:1
position: 15663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13678-15663:1:exon

NMUL_RS14645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14645
old locus tag: NmulC_2793
inference: COORDINATES: protein motif:HMM:NF014581.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MGNDILALGESQPKYNRRALASAQFIPQEYLDRQGYRKGDFWLGRTLNGRPFGWNEEMNLLTCAGPGAGKGVSTVVPNLLEFPGSAVVVDPKGELASMTAAFRRDVLGQKVIVLDPARTAKVSEDLRGTYNPFDELDADDPFVTTAAQVIASGIVVPNPKAKEPFWDDNALDFIQSCILYMVRHYPPNLRTLMKLRETVSMGDSDLFDAYVRRKQEEDPDFMGSESDAFGLFLKEMFNTPDFGGVIRETAAKIGRMGENTKGSVLSTAATHLDFVKSPELWDVLQSNPDPSRTFRLRELRRNDRPLTVYLCLPVDMIPRQGRWFRMIISRIIQSIERSEFDKKRDHPVLMMIDEFFQLGPIPSITNTLTYSRSFGLRLWLIVQDLNQLKTNYPDAWETILGSCGIKQFFGVNDLVTAKYVSELIGEEEIDIPSISLTKTSSGTESRNSSQTHSQGMTSTAGNNWSSSTGRSVSFSRTNSTNHNITTGRGISNNQAASSGVSESWGSGANNGETITNSQQTSQNSGRSAHATTGQNYGVSSSLGQSSSLSGSAGQSASSGMTFGSSISDTRGGSISTSESRNISNTAGEGSSVSTGINYAFSVSKQKRRLLRPEDVLVSFTKKNLVQLTHIRDQGGMMLFRTPFYADPYFRFLLTEKTKNDT
SIO_010081: NMUL_RS14645
subclass of: SO_0000673
so part of: NMUL_RS14645
location: 13678..15663
location: region:13678-15663:1
so has part: feature:13678-15663:1:exon

WP_011382080.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13678-15663:1:exon

NMUL_RS14650
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14650
old locus tag: NmulC_2794
so part of: sequence
location: 15653..16426
location: region:15653-16426:1
so has part: feature:15653-16426:1:exon
subclass of: SO_0000010

position:15653:1
position: 15653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16426:1
position: 16426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15653-16426:1:exon

NMUL_RS14650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14650
old locus tag: NmulC_2794
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTHNPPPEGARWDIPDWSPVQEADSDKHKSYLDQLDELQDLRRQLADMKNRPPEQPAQPEQKDNFETRSAAIKSLIIKLDTIARRNPPAILDDEDINGRFDAIEAFLKKYGLLNIGTQRSYNSPFLTLGQAARSDLEINLAELEVARTHFLRWHGSMAKNLPPPPKTEPSGIINRMIELYHYPRKEDPEIAHIKAYLGTEYIKFNPQGVASETDKNSFKTIALKKLPFEMRVLKYCLELWVIALIGMLIGGLIRLFI
SIO_010081: NMUL_RS14650
subclass of: SO_0000673
so part of: NMUL_RS14650
location: 15653..16426
location: region:15653-16426:1
so has part: feature:15653-16426:1:exon

WP_011382081.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15653-16426:1:exon