Nitrosospira multiformis ATCC 25196 plasmid 1, complete sequence.
type: Entry
definition: Nitrosospira multiformis ATCC 25196 plasmid 1, complete sequence.
sequence version: NC_007615.1
sequence date: 2023-08-02
sequence: sequence
division: CON
label: NC_007615.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02598322
keyword: RefSeq
source: Nitrosospira multiformis ATCC 25196
organism: Nitrosospira multiformis ATCC 25196
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.
reference: 1
references: 18390676
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP000104.1.\nURL -- http://www.jgi.doe.gov\nSource DNA available from Dan Arp (arpd@bcc.orst.edu)\nBacteria available from ATCC: ATCC 25196\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LLNL\nQuality assurance done by JGI-Stanford\nAnnotation done by JGI-ORNL and JGI-PGF\nContacts: Paul Richardson (microbes@cuba.jgi-psf.org)\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/10/2023 13:45:37\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,908\nCDSs (total) :: 2,858\nGenes (coding) :: 2,817\nCDSs (with protein) :: 2,817\nGenes (RNA) :: 50\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 4\nPseudo Genes (total) :: 41\nCDSs (without protein) :: 41\nPseudo Genes (ambiguous residues) :: 0 of 41\nPseudo Genes (frameshifted) :: 22 of 41\nPseudo Genes (incomplete) :: 25 of 41\nPseudo Genes (internal stop) :: 6 of 41\nPseudo Genes (multiple problems) :: 10 of 41\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 18871
topology: circular
so has quality: SO_0000988
location: 1..18871
location: region:1-18871:1
RO_0002162: 323848

NC_007615
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02598322
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Nitrosospira multiformis, an ammonia-oxidizing bacterium from the soil environment
author: Norton, J.M.
author: Klotz, M.G.
author: Stein, L.Y.
author: Arp, D.J.
author: Bottomley, P.J.
author: Chain, P.S.
author: Hauser, L.J.
author: Land, M.L.
author: Larimer, F.W.
author: Shin, M.W.
author: Starkenburg, S.R.
journal: Appl Environ Microbiol
volume: 74
issue: 11
pages: 3559-3572
year: 2008
pubmed: 18390676

18390676
type: PubMed
SIO_000068: pubmed

2
title: Complete sequence of Plasmid 1 of Nitrosospira multiformis ATCC 25196
author: Copeland, A.
author: Lucas, S.
author: Lapidus, A.
author: Barry, K.
author: Detter, J.C.
author: Glavina, T.
author: Hammon, N.
author: Israni, S.
author: Pitluck, S.
author: Chain, P.
author: Malfatti, S.
author: Shin, M.
author: Vergez, L.
author: Schmutz, J.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Lykidis, A.
author: Richardson, P.
journal: Unpublished

3
title: Direct Submission
author: Copeland, A.
author: Lucas, S.
author: Lapidus, A.
author: Barry, K.
author: Detter, J.C.
author: Glavina, T.
author: Hammon, N.
author: Israni, S.
author: Pitluck, S.
author: Chain, P.
author: Malfatti, S.
author: Shin, M.
author: Vergez, L.
author: Schmutz, J.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Lykidis, A.
author: Richardson, P.
journal: Submitted (08-AUG-2005) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18871:1
position: 18871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-18871:1:source
so part of: sequence
organism: Nitrosospira multiformis ATCC 25196
mol type: genomic DNA
strain: ATCC 25196
culture collection: ATCC:25196
type material: type strain of Nitrosospira multiformis
plasmid: 1

25196
type: ATCC
SIO_000068: atcc

323848
type: Taxonomy
SIO_000068: taxonomy

NMUL_RS14480
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
gene: mobC
locus tag: NMUL_RS14480
old locus tag: Nmul_B2796
so part of: sequence
location: 850..1188
location: region:850-1188:1
so has part: feature:850-1188:1:exon
subclass of: SO_0000010

position:850:1
position: 850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1188:1
position: 1188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:850-1188:1:exon

NMUL_RS14480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
gene: mobC
locus tag: NMUL_RS14480
old locus tag: Nmul_B2796
inference: COORDINATES: protein motif:HMM:NF017524.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MPRPKKEQAQKRPHRISIRLSDDELLHIRERANQAGGSTSKYLRKAALSGKVVIQQKTGNGPIVRQLLGIGNNLNQLTRMAHIHGGHDREKLREVLNDVQTVVMRFIDDSQD
SIO_010081: NMUL_RS14480
subclass of: SO_0000673
so part of: NMUL_RS14480
location: 850..1188
location: region:850-1188:1
so has part: feature:850-1188:1:exon

WP_011382052.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:850-1188:1:exon

NMUL_RS15090
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS15090
old locus tag: Nmul_B2797
so part of: sequence
location: 1172..2368
location: region:1172-2368:1
so has part: feature:1172-2368:1:exon
subclass of: SO_0000010

position:1172:1
position: 1172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2368:1
position: 2368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1172-2368:1:exon

NMUL_RS15090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS15090
old locus tag: Nmul_B2797
inference: COORDINATES: protein motif:HMM:NF015397.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MIVKINRRGHSFKGVVSYLMHDKDATSAERVAWWETGNLLTNDPKEAAKVMAYTDMNSEQLKRDNQGSLAGRQATAGAVYHYSLSWAHGENPNPEQQKTEAKATLEQLGLDKHQYLMVAHNDTQHAHLHIVVNLTDQETGKRNIPSYDKRELQSWALEYERTHGIYCDQRVENVHKREQGNPTKYRDEKQSYAGRVTEAYKQADSGKAFAAALETHGLTLAQGRRGGLVIVDMQGDIQKLARQIDGASTKEIKARLSDLDIDSLPLANELAKKRQETTLPEQAEPQAQATPPASAVRQPANIYEYKEAIQGNNNPPPASLNEFSSMVTKTMQENNGELHMNDGLTWWQRPVVSQAMRDWAIETAKEILDMAKDKWQEFVRRFDTGPENHERDGHERER
SIO_010081: NMUL_RS15090
subclass of: SO_0000673
so part of: NMUL_RS15090
location: 1172..2368
location: region:1172-2368:1
so has part: feature:1172-2368:1:exon

WP_011382053.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1172-2368:1:exon

NMUL_RS14490
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14490
old locus tag: Nmul_B2798
so part of: sequence
location: 2371..2787
location: region:2371-2787:1
so has part: feature:2371-2787:1:exon
subclass of: SO_0000010

position:2371:1
position: 2371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2787:1
position: 2787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2371-2787:1:exon

NMUL_RS14490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14490
old locus tag: Nmul_B2798
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIDSFDEFRKQGMAQASQEKAAPDLVINRPARQPYEAFAAKDKVLRLDIRCPSSDMGHSLPYNYITNITYKLSDYSEIFLTVSGITVTITGKNLRPVVEALKLHTCEFIQEYSSDKFIEHGDRNKPFVSSITIAVIGR
SIO_010081: NMUL_RS14490
subclass of: SO_0000673
so part of: NMUL_RS14490
location: 2371..2787
location: region:2371-2787:1
so has part: feature:2371-2787:1:exon

WP_011382054.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2371-2787:1:exon

NMUL_RS14495
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14495
so part of: sequence
location: 2821..3054
location: region:2821-3054:1
so has part: feature:2821-3054:1:exon
subclass of: SO_0000010

position:2821:1
position: 2821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3054:1
position: 3054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2821-3054:1:exon

NMUL_RS14495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14495
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKDSLMEEFVAGVTGAINDIREKVVEEGWFGRTVTTSSPEAGSSNAIDTWESYVQQAQRNAPAEKEEIAPGNDIDR
SIO_010081: NMUL_RS14495
subclass of: SO_0000673
so part of: NMUL_RS14495
location: 2821..3054
location: region:2821-3054:1
so has part: feature:2821-3054:1:exon

WP_146063223.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2821-3054:1:exon

NMUL_RS14500
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14500
old locus tag: Nmul_B2799
so part of: sequence
location: 3066..4604
location: region:3066-4604:1
so has part: feature:3066-4604:1:exon
subclass of: SO_0000010

position:3066:1
position: 3066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4604:1
position: 4604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3066-4604:1:exon

NMUL_RS14500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14500
old locus tag: Nmul_B2799
inference: COORDINATES: protein motif:HMM:NF021897.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraM recognition domain-containing protein
translation: MSFASSLDTPLLNLSAKDSFTLRDACNGVHIFGGIGSGKTSGSGKTLAGAYLRAGMGGLVLCAKPEEVNLWLDYANQHGRRRSVILFDENGGFNFIDYELARQGTKGISNVTECLLRVLEAADQATGRHGGTSDQFWVDAIRQILNYTIPAIYSAYARVTVSDIIYFVSSASTKPEQLADDNWVAESYYARTLRRVIENPKVPIEENARQSLLHYWSTQYPAIPEKTRGNMVISLSTRLDRFRHGSLQKSFCGNTDIVPEMTFHGAIIIMNMPALTWNEDGIIGQQLFKFMWQRAVESRNGLDKTQHERPVFLWADEAQYFTNLKDDQFLSTCRGSRACVVFLTQTLPSYYAVFGRDKSDAADGLVGKFNTQIFHQNACNRTNHFASEMIGRALQLRNTTGRSTGTSQSEGLSQGSSETSGHTRGNSGYGKSGGSGENIGSNIGMGRTETFSTGASEQMDYLVQPMFFASNLKSGGKKHGNQVSALWFKVGGHFQNAIGAKGGNTLHVTFRQ
SIO_010081: NMUL_RS14500
subclass of: SO_0000673
so part of: NMUL_RS14500
location: 3066..4604
location: region:3066-4604:1
so has part: feature:3066-4604:1:exon

WP_011382055.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3066-4604:1:exon

NMUL_RS14505
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14505
old locus tag: Nmul_B2800
so part of: sequence
location: 4601..5188
location: region:4601-5188:1
so has part: feature:4601-5188:1:exon
subclass of: SO_0000010

position:4601:1
position: 4601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5188:1
position: 5188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4601-5188:1:exon

NMUL_RS14505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14505
old locus tag: Nmul_B2800
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKPHPFIFLIGSNAICALLLIALGAVIFDWSQGIPQNPLVIASLFALAIYSFRANQRVTAYKKFQGEWDAIGGKQLKPRRKSQIVAAVFLWLISLYILLKTPRESDRLLYDLVLGVFFIPFTLWFCYLFLHNFPGLAVNLFRRGKSRSHTPKDYIVSHCQSVPRSAAVAAQINRNLPGYCKSLLEQKQNPARENK
SIO_010081: NMUL_RS14505
subclass of: SO_0000673
so part of: NMUL_RS14505
location: 4601..5188
location: region:4601-5188:1
so has part: feature:4601-5188:1:exon

WP_011382056.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4601-5188:1:exon

NMUL_RS14510
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14510
old locus tag: Nmul_B2801
so part of: sequence
location: complement(5288..5632)
location: region:5288-5632:-1
so has part: feature:5288-5632:-1:exon
subclass of: SO_0000010

position:5288:-1
position: 5288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5632:-1
position: 5632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5288-5632:-1:exon

NMUL_RS14510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14510
old locus tag: Nmul_B2801
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011112620.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MKRYILSPAAKTDITNIRKYTIQKWGKSQADKYTLELRERMRWLADNPMLGRARDEVKEGYRSFKEGSHIIFYRVVESTIEIIGIPHQNMDIEQNLEEEILLFTNIADGGFEGD
SIO_010081: NMUL_RS14510
subclass of: SO_0000673
so part of: NMUL_RS14510
location: complement(5288..5632)
location: region:5288-5632:-1
so has part: feature:5288-5632:-1:exon

WP_011382057.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5288-5632:-1:exon

NMUL_RS14515
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14515
old locus tag: Nmul_B2802
so part of: sequence
location: complement(5629..5874)
location: region:5629-5874:-1
so has part: feature:5629-5874:-1:exon
subclass of: SO_0000010

position:5629:-1
position: 5629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5874:-1
position: 5874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5629-5874:-1:exon

NMUL_RS14515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14515
old locus tag: Nmul_B2802
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011112621.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system Phd/YefM family antitoxin
translation: MKAIAAKEAKNNFGEMLDTVQREPLTIEKHGRAVAVVMSAREYQQMKLERLQAKLAVGEGQLNRGEGVDGEAVFAELLSEA
SIO_010081: NMUL_RS14515
subclass of: SO_0000673
so part of: NMUL_RS14515
location: complement(5629..5874)
location: region:5629-5874:-1
so has part: feature:5629-5874:-1:exon

WP_011382058.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5629-5874:-1:exon

NMUL_RS14520
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14520
old locus tag: Nmul_B2803
so part of: sequence
location: 6171..6557
location: region:6171-6557:1
so has part: feature:6171-6557:1:exon
subclass of: SO_0000010

position:6171:1
position: 6171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6557:1
position: 6557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6171-6557:1:exon

NMUL_RS14520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14520
old locus tag: Nmul_B2803
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017325352.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MQDVRKTIKPVEWVGSSFRDFRAFPDAVKDEMGYALHQAQIGGKSLSAKPLQGFGGAGVLEIVTNEMGDTFRAVYTVKFATAIYVLHAFQKKSKSGIKTPAEDMKLIEQRFKAAEADYRLQLEKGKIS
SIO_010081: NMUL_RS14520
subclass of: SO_0000673
so part of: NMUL_RS14520
location: 6171..6557
location: region:6171-6557:1
so has part: feature:6171-6557:1:exon

WP_011382059.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6171-6557:1:exon

NMUL_RS14525
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14525
old locus tag: Nmul_B2804
so part of: sequence
location: 6554..6907
location: region:6554-6907:1
so has part: feature:6554-6907:1:exon
subclass of: SO_0000010

position:6554:1
position: 6554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6907:1
position: 6907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6554-6907:1:exon

NMUL_RS14525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14525
old locus tag: Nmul_B2804
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006964370.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MTQDIENTIVRGSENLFADLGYADAETHLLKAGLVNRIQEVINEQKMTQTVAAKRMGLSQPDVSRLLKGHFRDISVERLMRLLTRLGCEIDIVIREQGKKTSRRNTIHLGMDVNVTA
SIO_010081: NMUL_RS14525
subclass of: SO_0000673
so part of: NMUL_RS14525
location: 6554..6907
location: region:6554-6907:1
so has part: feature:6554-6907:1:exon

WP_011382060.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6554-6907:1:exon

NMUL_RS14530
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14530
old locus tag: Nmul_B2805
so part of: sequence
location: 7010..7381
location: region:7010-7381:1
so has part: feature:7010-7381:1:exon
subclass of: SO_0000010

position:7010:1
position: 7010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7381:1
position: 7381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7010-7381:1:exon

NMUL_RS14530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14530
old locus tag: Nmul_B2805
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017744773.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: XRE family transcriptional regulator
translation: MTKGLIFQEIWNSLPSDRKAQIEARTRKLEAEYLTLQELRKEAGLTQAGVSQELGMPQSNVSRLEKGSDMLLSTLRQYVEAVGGKLNLTVELPNEPPIRLNVLSDLVDHPLTIEGSQPQAPVQ
SIO_010081: NMUL_RS14530
subclass of: SO_0000673
so part of: NMUL_RS14530
location: 7010..7381
location: region:7010-7381:1
so has part: feature:7010-7381:1:exon

WP_011382061.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7010-7381:1:exon

NMUL_RS14535
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14535
old locus tag: Nmul_B2806
so part of: sequence
location: complement(7404..8837)
location: region:7404-8837:-1
so has part: feature:7404-8837:-1:exon
subclass of: SO_0000010

position:7404:-1
position: 7404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8837:-1
position: 8837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7404-8837:-1:exon

NMUL_RS14535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14535
old locus tag: Nmul_B2806
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018995609.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MASFSNPLLFSKHFKIAPDELAKAGLIDPFLTVDTRLFIDPILLDKCSNKIISEEAYKAFRKYFENVIRLLAISKKEGDAAWRAAQNQFNLREAPANGLGYGRSDRPGTSRPEEIRNAILRTAKEIIELGSQDPEMISLMGFFEEKVGADTISDLTSRIIEPQLAKLTHEFCTPLGITLKTSDTSPDIPLPHYTSANGKERAIVLVPADIVRELPMANDWSDIEAAIDANAAIRARVNHLLAGITRPKVDDLKKAVREAALQSKELFEAFIAAIKENAAYYDPNSDVLGYYTLRRILGSKEYELKSNKKYEIEKGIDEIHRVVNDTMDMFKHHVEKGNLWEALWIDDKPKKERAAQLIYFAITDCFCKANDIDISPEANMGGGPIDFKYSKGYSARVLVEMKRSSGTVVHGYKEQLEIYKDASRTSHGVFVVLDYGDLGKKLTTIQAIRDALLESGEPASEIVVIDATQKISASKRK
SIO_010081: NMUL_RS14535
subclass of: SO_0000673
so part of: NMUL_RS14535
location: complement(7404..8837)
location: region:7404-8837:-1
so has part: feature:7404-8837:-1:exon

WP_011382062.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7404-8837:-1:exon

NMUL_RS14540
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14540
old locus tag: Nmul_B2807
so part of: sequence
location: 9045..10016
location: region:9045-10016:1
so has part: feature:9045-10016:1:exon
subclass of: SO_0000010

position:9045:1
position: 9045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10016:1
position: 10016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9045-10016:1:exon

NMUL_RS14540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14540
old locus tag: Nmul_B2807
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011381327.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MTTQNPDSQNALPATNRRLTAVAYQRLADIPPEIEWFANLPNDATRRAYNNALKDFMGFTDITRPDEFRSVTRAHVIAWRDELVKRSLSGTTIRHRLAALSSLFEYLCERNAVTHNPVKGVKRPPVESYEGKTPALGDHQARALLDAPHSLSLKGKRDRALLATLLYHALRRDELCRLTVKDFRHERRGVRHLRVLGKGGKTRYIPLHPAASTLITEYLEAAGHGAEDSAPLFHPVSNNCAGVSSKALTPDGVYKLVREYSSNLGFEIGPHSLRATAATNALDHQADISKVQEWLGHANISTTRIYDHRRSRPEDSPTFKVSY
SIO_010081: NMUL_RS14540
subclass of: SO_0000673
so part of: NMUL_RS14540
location: 9045..10016
location: region:9045-10016:1
so has part: feature:9045-10016:1:exon

WP_011382063.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9045-10016:1:exon

NMUL_RS15845
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS15845
so part of: sequence
location: complement(10328..10831)
location: region:10328-10831:-1
so has part: feature:10328-10831:-1:exon
subclass of: SO_0000010

position:10328:-1
position: 10328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10831:-1
position: 10831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10328-10831:-1:exon

NMUL_RS15845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS15845
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQISGDPNIWPRPPLVDDLIQNNAHALSNPLTLATHIEDLINTCRSNHISIDQLSLISLTCLEINTIALREHYGFGWFEEQPSETALINMGWRLMGFDILDLRGLISGLSGCGKISEIPFFQNYLSKTINKFGLFKTYRSASEFSEVRGLQIYNHAPFIPIGILIKN
SIO_010081: NMUL_RS15845
subclass of: SO_0000673
so part of: NMUL_RS15845
location: complement(10328..10831)
location: region:10328-10831:-1
so has part: feature:10328-10831:-1:exon

WP_146063224.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10328-10831:-1:exon

NMUL_RS14545
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14545
old locus tag: Nmul_B2808
so part of: sequence
location: complement(10897..15696)
location: region:10897-15696:-1
so has part: feature:10897-15696:-1:exon
subclass of: SO_0000010

position:10897:-1
position: 10897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15696:-1
position: 15696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10897-15696:-1:exon

NMUL_RS14545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14545
old locus tag: Nmul_B2808
inference: COORDINATES: protein motif:HMM:TIGR03696.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RHS repeat-associated core domain-containing protein
translation: MARLWSSMAVSRFIPSLFATLLLLASPLLHAAPPENPAPLPLLKVDGFEEPLVPMYGTTPKEDRALAEAISTHRSQSSFEDLAVFETFLKEYPRSGWNVGILANLGLAYYRQGYFSRAINAWERAWQTERTRPADNPMGKMLADRAMGELMRMHSRLGHADELEKLLADIKDRPISGPATELITDAHESLWMFRNEYDKAYLCGPMALKSLLVSAQADPAKIAIMDAARSGPHGYTLAQVSELASKANVPHRLIFRAPGQPIPVPSVVNWKLNHYAAIIGEQNGLYHVQDPTFASGDAWLTKEAIDAEASGYFLVPAGTQKVASWRMATPEEARRIYGMGQTSVNQPGTTQKLDSNLTCSNPKGPVPLTGSAASPPAMCVVNAKMMLVSLNLSDVPVGYQPPKGPSAKISLTYNQREASQPANFSFFNISPKWTLNVLSWVQDTPDSPGRSVLRYAAGGGSVDYSIGYSYSTASGAFSPERQGQAVLVRIPATGPATSYELRMPDGSKQVFAQSDGATVYPRRMFLSQIIDPSGNALTFNYDNQLRLVSLTDATGRNTIFSYEFPANPLLVTGITDPFGRRAELTYDTNRRLASITDVIGITSSFKYDTGGLINEMTTPYGTHHFTYGQNIYENSRFLEMTDPMGFTERLEFRHFASGIPNGDPVAPAGMGILNGFLYYRNTFHWDKHLYAITHTDYTQARIIHWLHNPAGQTSPIIESSKQPLERRVWNTYPGQGNSIMEGTAGTPIAIGRVLDDGSTQARRFTYNSIGKPLTAIDPTGRKTSFTYASNDIDLTSIQQTTGSGQATLAAFTYNSQHLPLTATDAAGKTTSYTYNSDGQVTGVTDALGQTTRYAYDGLGRLISITNPDNAVQHSFTYDAFDRVATATDSEGHTLAYEYDALDRVTQILYPDGTSTLNTYDLLDLVETKDRMGRATSYSYDANRRMTSMTDPAGQTTSYSYYRNGVLRSITDGNGNMTRWDIDIQSRPIAKVYADDSRETYAYDSASRLISVTDALGQTRQYGYTKDDRLAALSYANAISPTPGVSFAYDPYFPRRTTMTDGAGTTQFQYGAVGSLGALKLTGENGPYTNDEISYQYDALGRMTSRKVDTITESFAYDRLDRVTQHTNPLGSFNFSYLGQTGQLLSQQAGAVGTQWGYEDNTHDRRLKSITNSGLARGFHYATTPENQISTLTETAGGAAQKSWHYAYDGADRLLSAQPSSGGSFSYGYDAADNLTSLNGALTHYNTVNQLTSFNSESFSYDANGNLKDDGVRTYQWDAENRLLSISYKNDPSKATTFRYDGMGRRLAIVENNGGAITETRHLWCGATLCQARTAGDVVTRRYYPQGMAIPQGGTLLYYGTDHLGSVRDVMAAQNGAKVASYDYDPYGNQIAGSGRISVDFRYAGMFYHQQSGLYLTNFRAYDPKTAKWLSRDPIGEKGGLNLYGYVGGNPINMIDPLGLRALPWILGGASSDIATPDPSDIAWQKWAGWAILITGATIYDACSGNSESKTAQNKTAQPPICPPCNPPQGTQCYEPDTGHTHNGWDPHYHIWSRGQNPNTCQCYWNRGSGSKGTTQFPPVAPVGKEEIKDCGNYTTWPHQ
SIO_010081: NMUL_RS14545
subclass of: SO_0000673
so part of: NMUL_RS14545
location: complement(10897..15696)
location: region:10897-15696:-1
so has part: feature:10897-15696:-1:exon

WP_011382064.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10897-15696:-1:exon

NMUL_RS14550
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14550
old locus tag: Nmul_B2809
so part of: sequence
location: complement(15807..16472)
location: region:15807-16472:-1
so has part: feature:15807-16472:-1:exon
subclass of: SO_0000010

position:15807:-1
position: 15807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16472:-1
position: 16472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15807-16472:-1:exon

NMUL_RS14550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14550
old locus tag: Nmul_B2809
inference: COORDINATES: protein motif:HMM:TIGR02595.1
note: PEP-CTERM proteins occur, often in large numbers, in the proteomes of bacteria that also encode an exosortase, a predicted intramembrane cysteine proteinase. The presence of a PEP-CTERM domain at a protein's C-terminus predicts cleavage within the sorting domain, followed by covalent anchoring to some some component of the (usually Gram-negative) cell surface. Many PEP-CTERM proteins exhibit an unusual sequence composition that includes large numbers of potential glycosylation sites. Expression of one such protein has been shown restore the ability of a bacterium to form floc, a type of biofilm; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PEP-CTERM sorting domain-containing protein
translation: MFSKIAFTATLLLSQISLASAAIVNFDDLDASGGDLVLDTLSPYQGFTWTNFSAYTSIPGFPGFNNGIVSPDNAAYSGGESFGPIVTPVIGKIEADDPFDFVSAYLGSGYYDDLSLTVQGRLNGTLLFTTTLTLDTAAPLFVNFGFTGINELNFFAAATGSTTDPFQCGTVNCTQFTLDNLTFAPGSTTPPPNPLPEPSSLALLCLGGAGAWALRRRKVKA
SIO_010081: NMUL_RS14550
subclass of: SO_0000673
so part of: NMUL_RS14550
location: complement(15807..16472)
location: region:15807-16472:-1
so has part: feature:15807-16472:-1:exon

WP_011382065.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15807-16472:-1:exon

NMUL_RS14555
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14555
old locus tag: Nmul_B2810
so part of: sequence
location: 16775..17470
location: region:16775-17470:1
so has part: feature:16775-17470:1:exon
subclass of: SO_0000010

position:16775:1
position: 16775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17470:1
position: 17470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16775-17470:1:exon

NMUL_RS14555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14555
old locus tag: Nmul_B2810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013648932.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MPTIVFASSKGGAGKTTAAIILASEFARQGAAVTLIDADPNQHSAKWALKLGCPANISLVENTNEESIIEDIEEAEAKTAFVLVDLEGTASMAVASAISRADLVITLCQGSQDDADEAAKTIKLIKRQSKLLQRPINFSVLMTRTNPAITPRTLRHIMGEFEAAGVHIFTTSLIDREAFRAMRSFGGTVNDLNPKEVSGIEKAAQNVRELAKEVIARLKEGQKQERISAHG
SIO_010081: NMUL_RS14555
subclass of: SO_0000673
so part of: NMUL_RS14555
location: 16775..17470
location: region:16775-17470:1
so has part: feature:16775-17470:1:exon

WP_011382066.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16775-17470:1:exon

NMUL_RS14560
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14560
old locus tag: Nmul_B2811
so part of: sequence
location: 17463..17816
location: region:17463-17816:1
so has part: feature:17463-17816:1:exon
subclass of: SO_0000010

position:17463:1
position: 17463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17816:1
position: 17816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17463-17816:1:exon

NMUL_RS14560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14560
old locus tag: Nmul_B2811
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013648931.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGKERAGLDLGEDLDLTVFTPKTHTRHDSEEEKYAIKQSAEQSGFISREPRIRRRKPVSPYKIQLNLKVRDGIKELFQDLGERLHVHDKTVFERALLALLEKEGQSDLLQRYREIVK
SIO_010081: NMUL_RS14560
subclass of: SO_0000673
so part of: NMUL_RS14560
location: 17463..17816
location: region:17463-17816:1
so has part: feature:17463-17816:1:exon

WP_011382067.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17463-17816:1:exon

NMUL_RS14565
type: Gene
subclass of: SO_0000704
RO_0002162: 323848
locus tag: NMUL_RS14565
old locus tag: Nmul_B2812
so part of: sequence
location: 17830..18870
location: region:17830-18870:1
so has part: feature:17830-18870:1:exon
subclass of: SO_0000010

position:17830:1
position: 17830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18870:1
position: 18870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17830-18870:1:exon

NMUL_RS14565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 323848
locus tag: NMUL_RS14565
old locus tag: Nmul_B2812
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013648933.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPKKKTLVAVPSAVPPRAPIKSLQYDLFSLFVTNEPNSVSNTIELWDCIPKYFFTPKQVEKLRTADGLAKPYKWEYSYNGLPCAVKIQPALIEEEDGNFKAYFPSVTEELVEEALKKIFTDKHYGTHDPQNSESWVKFSLSMLYRELMTRGRSRSYKEIKRAIEVMNKCNIAFYKDGKELWSGAILQDLVTVDRKEYIADTDSHHIARLPLFISHAINQLEYRQFNYNRLMSCNEQLARWIYKRLINRFRQASFINEYHFMYSDIEQSSGLLQQGRETDNRKKVISSLEELQKCGILMRYETDERKEGRKVIDIKYTLYAGSDFIGEQKAANKRASDAELSMPVDK
SIO_010081: NMUL_RS14565
subclass of: SO_0000673
so part of: NMUL_RS14565
location: 17830..18870
location: region:17830-18870:1
so has part: feature:17830-18870:1:exon

WP_011382068.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17830-18870:1:exon