Pontibacter actiniarum strain DSM 19842 plasmid unnamed, complete sequence.
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Hymenobacteraceae; Pontibacter.
Submitted (09-MAY-2017) Physical Biosciences, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP021236.1.\nBacteria and source DNA available from Adam Deutschbauer.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAY-2017\nAssembly Method :: HGAP v. 3.0; Circulator v. May-2017;\n Pilon v. May-2017\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 180.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 09:41:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,351\nCDSs (total) :: 4,282\nGenes (coding) :: 4,262\nCDSs (with protein) :: 4,262\nGenes (RNA) :: 69\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 3\nPseudo Genes (total) :: 20\nCDSs (without protein) :: 20\nPseudo Genes (ambiguous residues) :: 0 of 20\nPseudo Genes (frameshifted) :: 6 of 20\nPseudo Genes (incomplete) :: 16 of 20\nPseudo Genes (internal stop) :: 5 of 20\nPseudo Genes (multiple problems) :: 4 of 20\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018617467.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF027890.2
COORDINATES: protein motif:HMM:NF014385.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018343976.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016988086.1
COORDINATES: protein motif:HMM:NF016232.2
COORDINATES: similar to AA sequence:RefSeq:WP_019898538.1
COORDINATES: similar to AA sequence:RefSeq:WP_019233337.1
COORDINATES: similar to AA sequence:RefSeq:WP_012931091.1
COORDINATES: similar to AA sequence:RefSeq:WP_012931325.1
COORDINATES: similar to AA sequence:RefSeq:WP_014678737.1
COORDINATES: protein motif:HMM:NF019401.2
COORDINATES: similar to AA sequence:RefSeq:WP_020404888.1
type II glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: protein motif:HMM:NF021378.2
COORDINATES: similar to AA sequence:RefSeq:WP_008616429.1
COORDINATES: similar to AA sequence:RefSeq:WP_014022540.1
COORDINATES: similar to AA sequence:RefSeq:WP_018620301.1
formate/nitrite transporter family protein
cell wall-binding repeat 2 family protein
COORDINATES: protein motif:HMM:NF025700.2
COORDINATES: protein motif:HMM:NF019607.2
COORDINATES: similar to AA sequence:RefSeq:WP_018480070.1
COORDINATES: similar to AA sequence:RefSeq:WP_017733315.1
COORDINATES: similar to AA sequence:RefSeq:WP_009579793.1
COORDINATES: similar to AA sequence:RefSeq:WP_017730736.1
COORDINATES: similar to AA sequence:RefSeq:WP_017730734.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019029651.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480076.1
COORDINATES: protein motif:HMM:NF024098.2
COORDINATES: protein motif:HMM:TIGR04183.1
T9SS type A sorting domain-containing protein
COORDINATES: protein motif:HMM:NF039704.1
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: similar to AA sequence:RefSeq:WP_015264250.1
COORDINATES: protein motif:HMM:NF037521.2
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010519661.1
GDCCVxC domain-containing (seleno)protein
COORDINATES: similar to AA sequence:RefSeq:WP_014200851.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480087.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_013073414.1
plasmid mobilization relaxosome protein MobC
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_011199140.1
COORDINATES: similar to AA sequence:RefSeq:WP_011199141.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480021.1
GO:0032991 - protein-containing complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0032196 - transposition [Evidence IEA]
TraG family conjugative transposon ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_007661346.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480024.1
COORDINATES: similar to AA sequence:RefSeq:WP_007661352.1
COORDINATES: protein motif:HMM:TIGR03779.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480028.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480030.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008613766.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_015268178.1
COORDINATES: similar to AA sequence:RefSeq:WP_009778856.1
COORDINATES: similar to AA sequence:RefSeq:WP_014771893.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017730189.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018649.2
COORDINATES: similar to AA sequence:RefSeq:WP_008615616.1
COORDINATES: similar to AA sequence:RefSeq:WP_002983017.1
COORDINATES: similar to AA sequence:RefSeq:WP_009195295.1
COORDINATES: protein motif:HMM:NF025029.2
murein L,D-transpeptidase catalytic domain family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017733293.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014375665.1
COORDINATES: protein motif:HMM:NF023390.2
COORDINATES: similar to AA sequence:RefSeq:WP_019949152.1
cation diffusion facilitator family transporter
COORDINATES: protein motif:HMM:NF015411.2
GO:0050661 - NADP binding [Evidence IEA]
NAD(P)-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012611.2
COORDINATES: similar to AA sequence:RefSeq:WP_016196653.1
COORDINATES: similar to AA sequence:RefSeq:WP_018478861.1
COORDINATES: similar to AA sequence:RefSeq:WP_009778867.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008615606.1
COORDINATES: similar to AA sequence:RefSeq:WP_006262178.1
GO:0004750 - D-ribulose-phosphate 3-epimerase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: protein motif:HMM:NF024745.2
COORDINATES: protein motif:HMM:NF024553.2
COORDINATES: similar to AA sequence:RefSeq:WP_020601882.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480043.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480044.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: protein motif:HMM:NF025817.2
multiubiquitin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007220263.1
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039808.1
COORDINATES: similar to AA sequence:RefSeq:WP_017732293.1
COORDINATES: similar to AA sequence:RefSeq:WP_011709220.1
COORDINATES: protein motif:HMM:NF023255.2
COORDINATES: similar to AA sequence:RefSeq:WP_018343998.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007657990.1
COORDINATES: protein motif:HMM:NF024834.2
COORDINATES: similar to AA sequence:RefSeq:WP_013931267.1
COORDINATES: similar to AA sequence:RefSeq:WP_012843880.1
COORDINATES: protein motif:HMM:NF015798.2
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017732283.1
COORDINATES: similar to AA sequence:RefSeq:WP_019948032.1
COORDINATES: protein motif:HMM:NF012621.2
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017732276.1
COORDINATES: similar to AA sequence:RefSeq:WP_017732275.1
COORDINATES: similar to AA sequence:RefSeq:WP_009580914.1
COORDINATES: similar to AA sequence:RefSeq:WP_017730682.1
vitamin K epoxide reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017734001.1
COORDINATES: protein motif:HMM:NF016955.2
TerB family tellurite resistance protein
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: protein motif:HMM:TIGR02293.1
COORDINATES: protein motif:HMM:NF039631.1
COORDINATES: protein motif:HMM:NF040319.1
COORDINATES: protein motif:HMM:NF020419.2
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016361990.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007655716.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480053.1
COORDINATES: similar to AA sequence:RefSeq:WP_015030016.1
COORDINATES: protein motif:HMM:NF013069.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018619814.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480060.1
COORDINATES: similar to AA sequence:RefSeq:WP_009124663.1
COORDINATES: similar to AA sequence:RefSeq:WP_014771903.1
COORDINATES: similar to AA sequence:RefSeq:WP_015159224.1
COORDINATES: similar to AA sequence:RefSeq:WP_011709154.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018478871.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF015658.2
COORDINATES: similar to AA sequence:RefSeq:WP_012022301.1
GO:0005507 - copper ion binding [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: protein motif:HMM:NF039593.1
heavy metal-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019414266.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480075.1
COORDINATES: protein motif:HMM:NF012392.2
COORDINATES: similar to AA sequence:RefSeq:WP_013454194.1
COORDINATES: similar to AA sequence:RefSeq:WP_017733998.1
COORDINATES: similar to AA sequence:RefSeq:WP_020161417.1
COORDINATES: protein motif:HMM:NF019500.2
COORDINATES: similar to AA sequence:RefSeq:WP_013073421.1
COORDINATES: similar to AA sequence:RefSeq:WP_019949146.1
COORDINATES: similar to AA sequence:RefSeq:WP_019949140.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480069.1
COORDINATES: protein motif:HMM:NF033580.1
COORDINATES: similar to AA sequence:RefSeq:WP_015752953.1
COORDINATES: similar to AA sequence:RefSeq:WP_000890371.1
COORDINATES: similar to AA sequence:RefSeq:WP_013072814.1
COORDINATES: similar to AA sequence:RefSeq:WP_013454200.1
COORDINATES: similar to AA sequence:RefSeq:WP_009778886.1